Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99917 * 2 1 4 4 H 1.07996 * 119.99995 * 203.50395 * 3 2 1 5 5 C 1.38807 * 119.99793 * 23.50889 * 3 2 1 6 6 N 1.31620 * 120.00249 * 15.20605 * 5 3 2 7 7 Si 1.86801 * 119.99855 * 195.20532 * 5 3 2 8 8 H 1.48505 * 109.47172 * 60.00014 * 7 5 3 9 9 H 1.48499 * 109.47432 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47467 * 300.00169 * 7 5 3 11 11 C 1.46499 * 120.00043 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64276 * 178.30999 * 11 2 1 13 13 C 1.55155 * 110.71902 * 301.45085 * 11 2 1 14 14 C 1.54912 * 101.58135 * 154.04044 * 13 11 2 15 15 N 1.47418 * 104.83439 * 322.99472 * 14 13 11 16 16 C 1.34780 * 125.65203 * 204.17295 * 15 14 13 17 17 O 1.21277 * 120.00396 * 179.97438 * 16 15 14 18 18 C 1.50694 * 119.99711 * 359.94535 * 16 15 14 19 19 C 1.52999 * 109.47317 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47016 * 179.97438 * 20 19 18 22 22 C 1.38672 * 120.41579 * 90.01013 * 21 20 19 23 23 C 1.38623 * 118.42373 * 180.02562 * 22 21 20 24 24 C 1.38227 * 119.16102 * 359.97438 * 23 22 21 25 25 N 1.31858 * 120.76265 * 0.02562 * 24 23 22 26 26 C 1.31890 * 121.72390 * 359.70386 * 25 24 23 27 27 C 1.47027 * 108.70477 * 24.12505 * 15 14 13 28 28 H 1.09007 * 109.47236 * 275.21482 * 1 2 3 29 29 H 1.08997 * 109.47501 * 35.21340 * 1 2 3 30 30 H 1.09000 * 109.47382 * 155.21683 * 1 2 3 31 31 H 0.97006 * 119.99500 * 179.97438 * 6 5 3 32 32 H 1.09000 * 111.00799 * 272.11606 * 13 11 2 33 33 H 1.09005 * 111.00371 * 35.97255 * 13 11 2 34 34 H 1.09003 * 110.36583 * 81.83315 * 14 13 11 35 35 H 1.08998 * 110.36720 * 204.15198 * 14 13 11 36 36 H 1.09011 * 109.47120 * 299.99781 * 18 16 15 37 37 H 1.09001 * 109.47539 * 59.99683 * 18 16 15 38 38 H 1.08998 * 109.47049 * 299.99927 * 19 18 16 39 39 H 1.09000 * 109.46987 * 60.00307 * 19 18 16 40 40 H 1.08998 * 109.47418 * 300.00233 * 20 19 18 41 41 H 1.09008 * 109.46592 * 60.00296 * 20 19 18 42 42 H 1.08005 * 120.78930 * 359.96971 * 22 21 20 43 43 H 1.08001 * 120.42160 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.62157 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.61699 * 180.31904 * 26 25 24 46 46 H 1.09003 * 109.87886 * 239.52793 * 27 15 14 47 47 H 1.08995 * 110.01099 * 118.43025 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2248 -0.3730 5 6 1.5420 2.3381 0.4795 6 7 0.4441 2.2520 1.2004 7 14 2.2824 4.0110 0.1017 8 1 2.3245 4.2131 -1.3689 9 1 1.4509 5.0724 0.7241 10 1 3.6608 4.0776 0.6501 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0306 13 6 1.8162 -2.1232 1.2371 14 6 2.1053 -3.5568 0.7261 15 7 1.6993 -3.5415 -0.6910 16 6 1.3344 -4.6179 -1.4153 17 8 1.0178 -4.4871 -2.5787 18 6 1.3204 -5.9842 -0.7797 19 6 0.8731 -7.0220 -1.8111 20 6 0.8595 -8.4093 -1.1660 21 6 0.4183 -9.4313 -2.1817 22 6 1.3507 -10.0718 -2.9839 23 6 0.8992 -11.0043 -3.9048 24 6 -0.4558 -11.2634 -3.9920 25 7 -1.3141 -10.6351 -3.2127 26 6 -0.9199 -9.7459 -2.3220 27 6 1.7573 -2.1572 -1.1831 28 1 -0.3634 0.0934 1.0235 29 1 -0.3634 0.8396 -0.5925 30 1 -0.3634 -0.9330 -0.4308 31 1 0.0198 3.0572 1.5358 32 1 2.4479 -1.8780 2.0909 33 1 0.7618 -2.0023 1.4855 34 1 3.1678 -3.7838 0.8140 35 1 1.5139 -4.2842 1.2823 36 1 2.3220 -6.2312 -0.4271 37 1 0.6281 -5.9863 0.0622 38 1 -0.1282 -6.7752 -2.1641 39 1 1.5659 -7.0199 -2.6526 40 1 1.8610 -8.6559 -0.8133 41 1 0.1669 -8.4117 -0.3242 42 1 2.4036 -9.8487 -2.8939 43 1 1.5973 -11.5225 -4.5456 44 1 -0.8158 -11.9882 -4.7071 45 1 -1.6518 -9.2552 -1.6976 46 1 0.7729 -1.8469 -1.5336 47 1 2.4810 -2.0798 -1.9944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193112740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = 15.208430 kcal Electronic energy + Delta-G solvation = -25582.390619 eV Core-core repulsion = 21958.423137 eV Total energy + Delta-G solvation = -3623.967482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49879 -39.80879 -37.58067 -35.51090 -34.79331 -32.61096 -31.89455 -31.37750 -29.80059 -28.39658 -27.04263 -26.05595 -24.07204 -23.86973 -22.76302 -22.27651 -21.33391 -19.28866 -18.93976 -17.42428 -17.07502 -16.83377 -16.78859 -16.09327 -15.69450 -15.26504 -14.88587 -14.50165 -14.30847 -13.87142 -13.71178 -13.48626 -13.36908 -13.33379 -12.80069 -12.68091 -12.56112 -12.36089 -12.09972 -11.88088 -11.69435 -11.50253 -11.35868 -11.01157 -10.94700 -10.78876 -10.59833 -10.50461 -10.27866 -10.09552 -9.91267 -9.89715 -9.75228 -9.61070 -9.23852 -8.60120 -8.33227 -6.83075 -5.78940 -3.26186 0.79256 0.97024 2.81983 3.19448 3.36147 3.42161 3.43562 3.50887 4.12776 4.39976 4.44789 4.46082 4.54918 4.65052 4.68774 4.87521 4.93978 5.01809 5.12250 5.15246 5.27963 5.30079 5.39232 5.41924 5.45292 5.52902 5.53681 5.57659 5.76940 5.77547 5.82618 5.88656 5.99442 6.05311 6.10888 6.28984 6.38037 6.39533 6.55246 6.62894 6.77896 6.85703 7.29815 7.66004 7.67207 7.75104 7.79669 8.32151 8.37958 9.15870 9.78818 10.27948 11.25714 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.001949 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.046298 B =14365.978023 C =14421.634883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.099 3.901 15 N -0.613 5.613 16 C 0.521 3.479 17 O -0.549 6.549 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.074 4.074 23 C -0.171 4.171 24 C 0.089 3.911 25 N -0.485 5.485 26 C 0.101 3.899 27 C 0.086 3.914 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.003 0.997 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -25.061 -2.455 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.024 4.024 15 N -0.347 5.347 16 C 0.310 3.690 17 O -0.427 6.427 18 C -0.175 4.175 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.068 4.068 25 N -0.193 5.193 26 C -0.056 4.056 27 C -0.039 4.039 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.090 0.910 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.476 -25.051 -3.128 25.288 hybrid contribution 1.280 1.169 0.004 1.733 sum 2.756 -23.882 -3.124 24.242 Atomic orbital electron populations 1.20801 0.82570 0.95680 0.99632 1.43846 1.01800 0.99906 1.85024 1.19152 0.98869 0.85356 1.35812 0.91319 1.25020 0.98088 0.98602 0.97646 1.70066 1.21099 1.27576 1.35943 0.86323 0.78345 0.83667 0.78109 1.20995 1.21621 1.20866 1.21301 0.96305 0.85993 0.90174 0.90381 1.23391 1.02886 0.92572 1.00333 1.22370 0.99337 0.99437 0.81261 1.48562 1.65933 1.07794 1.12435 1.20302 0.77022 0.85491 0.86213 1.90695 1.48974 1.86149 1.16903 1.21646 1.03769 0.92132 0.99958 1.21321 1.03291 0.91305 0.97685 1.20603 1.02296 0.92587 0.96104 1.20923 0.94824 0.98448 0.98812 1.21535 1.00164 0.94384 0.93917 1.22154 0.97461 0.99548 0.99925 1.22763 0.89784 0.97507 0.96736 1.67693 1.39333 1.07329 1.04910 1.22727 0.93933 0.93814 0.95135 1.22729 1.02292 0.79930 0.98912 0.94766 0.94170 0.97824 0.93596 0.90360 0.90632 0.91652 0.91337 0.89057 0.88919 0.90889 0.91074 0.90552 0.90335 0.84835 0.84834 0.82911 0.82782 0.90982 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.70 59.85 0.46 4.26 16 2 N -0.59 -14.14 2.93 -171.39 -0.50 -14.64 16 3 C -0.26 -7.00 9.59 -15.06 -0.14 -7.14 16 4 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 5 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 6 N -0.90 -25.74 10.87 55.49 0.60 -25.13 16 7 Si 0.91 21.45 29.58 -169.99 -5.03 16.42 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.34 3.43 -66.10 -0.23 3.11 16 12 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 13 C -0.15 -2.44 6.65 -24.58 -0.16 -2.61 16 14 C 0.10 1.24 6.69 -2.53 -0.02 1.23 16 15 N -0.61 -9.43 3.33 -170.52 -0.57 -10.00 16 16 C 0.52 7.85 7.85 -10.99 -0.09 7.76 16 17 O -0.55 -10.50 16.31 5.56 0.09 -10.41 16 18 C -0.14 -1.31 4.71 -27.89 -0.13 -1.44 16 19 C -0.10 -0.93 4.49 -26.73 -0.12 -1.05 16 20 C -0.08 -0.53 5.37 -27.88 -0.15 -0.68 16 21 C -0.13 -1.06 5.15 -104.49 -0.54 -1.60 16 22 C -0.07 -0.56 9.86 -39.28 -0.39 -0.95 16 23 C -0.17 -1.23 10.11 -39.44 -0.40 -1.63 16 24 C 0.09 0.75 11.18 -17.54 -0.20 0.55 16 25 N -0.48 -5.14 10.36 -13.25 -0.14 -5.28 16 26 C 0.10 0.95 10.86 -17.55 -0.19 0.76 16 27 C 0.09 1.57 6.40 -3.06 -0.02 1.55 16 28 H 0.03 0.88 7.32 -51.93 -0.38 0.50 16 29 H 0.04 1.05 7.44 -51.93 -0.39 0.66 16 30 H 0.00 0.07 6.28 -51.93 -0.33 -0.25 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.34 7.28 -51.93 -0.38 0.97 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 7.47 -51.93 -0.39 0.30 16 36 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 38 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.08 0.45 8.09 -51.92 -0.42 0.03 16 42 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.07 1.49 6.13 -51.93 -0.32 1.17 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -32.88 380.84 -9.81 -42.69 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.61 Total: -1.57 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.40 Total: 2.18 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.60 Total: -55.05 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.88 -9.81 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193112740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.894 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds