Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99917 * 2 1 4 4 H 1.07996 * 119.99995 * 203.50395 * 3 2 1 5 5 C 1.38807 * 119.99793 * 23.50889 * 3 2 1 6 6 N 1.31620 * 120.00249 * 15.20605 * 5 3 2 7 7 Si 1.86801 * 119.99855 * 195.20532 * 5 3 2 8 8 H 1.48505 * 109.47172 * 60.00014 * 7 5 3 9 9 H 1.48499 * 109.47432 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47467 * 300.00169 * 7 5 3 11 11 C 1.46499 * 120.00043 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.64276 * 178.30999 * 11 2 1 13 13 C 1.55155 * 110.71902 * 301.45085 * 11 2 1 14 14 C 1.54912 * 101.58135 * 154.04044 * 13 11 2 15 15 N 1.47418 * 104.83439 * 322.99472 * 14 13 11 16 16 C 1.34780 * 125.65203 * 204.17295 * 15 14 13 17 17 O 1.21277 * 120.00396 * 179.97438 * 16 15 14 18 18 C 1.50694 * 119.99711 * 359.94535 * 16 15 14 19 19 C 1.52999 * 109.47317 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47016 * 179.97438 * 20 19 18 22 22 C 1.38672 * 120.41579 * 90.01013 * 21 20 19 23 23 C 1.38623 * 118.42373 * 180.02562 * 22 21 20 24 24 C 1.38227 * 119.16102 * 359.97438 * 23 22 21 25 25 N 1.31858 * 120.76265 * 0.02562 * 24 23 22 26 26 C 1.31890 * 121.72390 * 359.70386 * 25 24 23 27 27 C 1.47027 * 108.70477 * 24.12505 * 15 14 13 28 28 H 1.09007 * 109.47236 * 275.21482 * 1 2 3 29 29 H 1.08997 * 109.47501 * 35.21340 * 1 2 3 30 30 H 1.09000 * 109.47382 * 155.21683 * 1 2 3 31 31 H 0.97006 * 119.99500 * 179.97438 * 6 5 3 32 32 H 1.09000 * 111.00799 * 272.11606 * 13 11 2 33 33 H 1.09005 * 111.00371 * 35.97255 * 13 11 2 34 34 H 1.09003 * 110.36583 * 81.83315 * 14 13 11 35 35 H 1.08998 * 110.36720 * 204.15198 * 14 13 11 36 36 H 1.09011 * 109.47120 * 299.99781 * 18 16 15 37 37 H 1.09001 * 109.47539 * 59.99683 * 18 16 15 38 38 H 1.08998 * 109.47049 * 299.99927 * 19 18 16 39 39 H 1.09000 * 109.46987 * 60.00307 * 19 18 16 40 40 H 1.08998 * 109.47418 * 300.00233 * 20 19 18 41 41 H 1.09008 * 109.46592 * 60.00296 * 20 19 18 42 42 H 1.08005 * 120.78930 * 359.96971 * 22 21 20 43 43 H 1.08001 * 120.42160 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.62157 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.61699 * 180.31904 * 26 25 24 46 46 H 1.09003 * 109.87886 * 239.52793 * 27 15 14 47 47 H 1.08995 * 110.01099 * 118.43025 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2248 -0.3730 5 6 1.5420 2.3381 0.4795 6 7 0.4441 2.2520 1.2004 7 14 2.2824 4.0110 0.1017 8 1 2.3245 4.2131 -1.3689 9 1 1.4509 5.0724 0.7241 10 1 3.6608 4.0776 0.6501 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 -0.0306 13 6 1.8162 -2.1232 1.2371 14 6 2.1053 -3.5568 0.7261 15 7 1.6993 -3.5415 -0.6910 16 6 1.3344 -4.6179 -1.4153 17 8 1.0178 -4.4871 -2.5787 18 6 1.3204 -5.9842 -0.7797 19 6 0.8731 -7.0220 -1.8111 20 6 0.8595 -8.4093 -1.1660 21 6 0.4183 -9.4313 -2.1817 22 6 1.3507 -10.0718 -2.9839 23 6 0.8992 -11.0043 -3.9048 24 6 -0.4558 -11.2634 -3.9920 25 7 -1.3141 -10.6351 -3.2127 26 6 -0.9199 -9.7459 -2.3220 27 6 1.7573 -2.1572 -1.1831 28 1 -0.3634 0.0934 1.0235 29 1 -0.3634 0.8396 -0.5925 30 1 -0.3634 -0.9330 -0.4308 31 1 0.0198 3.0572 1.5358 32 1 2.4479 -1.8780 2.0909 33 1 0.7618 -2.0023 1.4855 34 1 3.1678 -3.7838 0.8140 35 1 1.5139 -4.2842 1.2823 36 1 2.3220 -6.2312 -0.4271 37 1 0.6281 -5.9863 0.0622 38 1 -0.1282 -6.7752 -2.1641 39 1 1.5659 -7.0199 -2.6526 40 1 1.8610 -8.6559 -0.8133 41 1 0.1669 -8.4117 -0.3242 42 1 2.4036 -9.8487 -2.8939 43 1 1.5973 -11.5225 -4.5456 44 1 -0.8158 -11.9882 -4.7071 45 1 -1.6518 -9.2552 -1.6976 46 1 0.7729 -1.8469 -1.5336 47 1 2.4810 -2.0798 -1.9944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193112740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = -4.326485 kcal Electronic energy + Delta-G solvation = -25583.237716 eV Core-core repulsion = 21958.423137 eV Total energy + Delta-G solvation = -3624.814579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19187 -40.94562 -38.98330 -36.54697 -36.20469 -33.56413 -33.15677 -32.31644 -31.25064 -29.64607 -28.12797 -27.92040 -25.38367 -24.46369 -24.03193 -23.44417 -21.98629 -20.87336 -20.07560 -18.94644 -18.13924 -17.86807 -17.57731 -17.34921 -16.65880 -16.57867 -16.00496 -15.72073 -15.26208 -15.13252 -14.90676 -14.70050 -14.44617 -14.31391 -14.11841 -13.91434 -13.66306 -13.32930 -13.18444 -12.95507 -12.86201 -12.84158 -12.61169 -12.51646 -12.39096 -12.24252 -12.12196 -12.08732 -11.82522 -11.62458 -11.44827 -10.89895 -10.68095 -10.63556 -10.34619 -9.84109 -9.61050 -8.81276 -7.85176 -5.34061 0.20510 0.38673 1.46705 1.49997 1.55865 1.67773 2.03184 2.51068 2.89083 3.27340 3.53865 3.58453 3.61409 3.80887 3.87658 3.94907 4.06854 4.11273 4.12434 4.25352 4.29456 4.30171 4.37227 4.48778 4.55415 4.63792 4.66094 4.72537 4.79372 4.83246 4.87303 4.93908 5.01398 5.03178 5.14864 5.16549 5.24123 5.28387 5.33474 5.40780 5.43704 5.47081 5.63279 5.65505 5.84521 6.30407 6.63143 7.06432 7.11230 7.20279 7.82463 8.27826 9.18057 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.001949 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.046298 B =14365.978023 C =14421.634883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.073 0.927 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.165 3.835 12 H 0.082 0.918 13 C -0.144 4.144 14 C 0.109 3.891 15 N -0.616 5.616 16 C 0.513 3.487 17 O -0.600 6.600 18 C -0.123 4.123 19 C -0.092 4.092 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.082 4.082 23 C -0.171 4.171 24 C 0.072 3.928 25 N -0.519 5.519 26 C 0.079 3.921 27 C 0.097 3.903 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.022 0.978 31 H 0.249 0.751 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.171 0.829 45 H 0.161 0.839 46 H 0.041 0.959 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -27.280 -1.378 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.399 4.399 4 H 0.091 0.909 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.197 1.197 11 C 0.056 3.944 12 H 0.100 0.900 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.349 5.349 16 C 0.305 3.695 17 O -0.481 6.481 18 C -0.162 4.162 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.108 4.108 23 C -0.190 4.190 24 C -0.084 4.084 25 N -0.228 5.228 26 C -0.077 4.077 27 C -0.029 4.029 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.178 0.822 46 H 0.060 0.940 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.648 -27.317 -2.030 27.634 hybrid contribution 0.635 1.792 -0.422 1.948 sum 4.283 -25.525 -2.452 25.998 Atomic orbital electron populations 1.20448 0.83169 0.95227 0.97786 1.44012 1.01771 1.01178 1.85431 1.19501 0.99053 0.86581 1.34744 0.90886 1.25767 0.98825 1.01837 0.98075 1.70215 1.22520 1.27872 1.37356 0.85336 0.77905 0.79536 0.77619 1.20953 1.22141 1.19652 1.21489 0.95975 0.84699 0.92214 0.90020 1.23227 1.01793 0.94476 0.98918 1.22533 1.01910 0.97563 0.79298 1.48679 1.66057 1.06446 1.13723 1.21388 0.75397 0.87039 0.85695 1.90677 1.51013 1.87010 1.19418 1.21714 1.06490 0.87969 1.00021 1.21227 1.01301 0.93040 0.97494 1.20557 1.04026 0.90124 0.95760 1.21117 0.94469 0.98812 0.99333 1.21915 1.01228 0.94114 0.93573 1.22479 0.97394 0.99260 0.99895 1.23183 0.90483 0.97852 0.96919 1.67661 1.40687 1.08436 1.06010 1.22971 0.94975 0.94216 0.95539 1.22323 1.00172 0.82157 0.98244 0.96863 0.97243 0.95938 0.94203 0.89446 0.92568 0.88579 0.87490 0.85575 0.86245 0.93474 0.92803 0.88236 0.88791 0.82686 0.82214 0.81152 0.82180 0.94019 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 7.70 127.77 0.98 9.90 16 2 N -0.60 -29.53 2.93 -696.16 -2.04 -31.57 16 3 C -0.27 -14.46 9.59 84.03 0.81 -13.65 16 4 H 0.07 3.78 7.85 -2.91 -0.02 3.75 16 5 C -0.05 -2.73 5.05 84.86 0.43 -2.30 16 6 N -0.93 -54.58 10.87 21.65 0.24 -54.34 16 7 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 C 0.16 6.27 3.43 46.18 0.16 6.43 16 12 H 0.08 3.03 7.93 -2.39 -0.02 3.01 16 13 C -0.14 -4.35 6.65 31.99 0.21 -4.14 16 14 C 0.11 2.26 6.69 86.86 0.58 2.84 16 15 N -0.62 -17.56 3.33 -811.80 -2.70 -20.26 16 16 C 0.51 14.47 7.85 87.65 0.69 15.16 16 17 O -0.60 -23.01 16.31 -3.02 -0.05 -23.06 16 18 C -0.12 -1.89 4.71 29.85 0.14 -1.75 16 19 C -0.09 -1.56 4.49 30.59 0.14 -1.42 16 20 C -0.07 -0.70 5.37 29.85 0.16 -0.54 16 21 C -0.14 -2.01 5.15 -19.78 -0.10 -2.11 16 22 C -0.08 -1.07 9.86 22.47 0.22 -0.85 16 23 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 24 C 0.07 1.16 11.18 84.69 0.95 2.11 16 25 N -0.52 -10.99 10.36 -195.84 -2.03 -13.02 16 26 C 0.08 1.46 10.86 84.67 0.92 2.38 16 27 C 0.10 3.53 6.40 86.73 0.55 4.09 16 28 H 0.01 0.71 7.32 -2.38 -0.02 0.69 16 29 H 0.01 0.49 7.44 -2.39 -0.02 0.47 16 30 H 0.02 1.00 6.28 -2.39 -0.01 0.99 16 31 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 1.93 7.28 -2.38 -0.02 1.91 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.51 7.47 -2.39 -0.02 1.49 16 36 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.12 1.30 7.85 -2.39 -0.02 1.28 16 38 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.10 0.62 8.10 -2.39 -0.02 0.60 16 41 H 0.09 0.72 8.09 -2.38 -0.02 0.70 16 42 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 44 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 46 H 0.04 1.77 6.13 -2.39 -0.01 1.75 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -75.57 380.84 3.45 -72.12 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.94 Total: 9.32 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.06 Total: 14.20 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -6.54 Total: -119.19 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.57 3.45 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193112740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.795 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds