Wall clock time and date at job start Tue Mar 31 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 120.00074 * 2 1 4 4 H 1.08005 * 120.00010 * 144.66103 * 3 2 1 5 5 C 1.38809 * 120.00406 * 324.66781 * 3 2 1 6 6 N 1.31615 * 120.00616 * 157.56130 * 5 3 2 7 7 Si 1.86809 * 119.99621 * 337.55904 * 5 3 2 8 8 H 1.48502 * 109.46790 * 95.53371 * 7 5 3 9 9 H 1.48493 * 109.47140 * 215.53745 * 7 5 3 10 10 H 1.48507 * 109.47099 * 335.53728 * 7 5 3 11 11 C 1.46502 * 119.99752 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.63608 * 176.85863 * 11 2 1 13 13 C 1.55156 * 110.87191 * 53.61663 * 11 2 1 14 14 C 1.55124 * 101.48855 * 205.89565 * 13 11 2 15 15 N 1.47420 * 104.72227 * 37.29186 * 14 13 11 16 16 C 1.34783 * 125.65134 * 155.81571 * 15 14 13 17 17 O 1.21281 * 120.00219 * 179.69282 * 16 15 14 18 18 C 1.50707 * 119.99661 * 359.69809 * 16 15 14 19 19 C 1.52996 * 109.46797 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46661 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47070 * 180.02562 * 20 19 18 22 22 C 1.38674 * 120.41967 * 89.99817 * 21 20 19 23 23 C 1.38633 * 118.42200 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.15868 * 0.02562 * 23 22 21 25 25 N 1.31859 * 120.76277 * 359.97438 * 24 23 22 26 26 C 1.31881 * 121.72863 * 359.70341 * 25 24 23 27 27 C 1.47019 * 108.70475 * 335.55638 * 15 14 13 28 28 H 1.09001 * 109.47544 * 268.32361 * 1 2 3 29 29 H 1.09001 * 109.46842 * 28.32575 * 1 2 3 30 30 H 1.09003 * 109.46815 * 148.32277 * 1 2 3 31 31 H 0.97000 * 119.99892 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00571 * 324.13533 * 13 11 2 33 33 H 1.09007 * 111.00175 * 87.94596 * 13 11 2 34 34 H 1.09004 * 110.49734 * 278.45465 * 14 13 11 35 35 H 1.09001 * 110.34806 * 156.06207 * 14 13 11 36 36 H 1.08998 * 109.46775 * 59.99524 * 18 16 15 37 37 H 1.08997 * 109.47001 * 300.00068 * 18 16 15 38 38 H 1.08994 * 109.47138 * 60.00395 * 19 18 16 39 39 H 1.08994 * 109.47163 * 299.99875 * 19 18 16 40 40 H 1.09003 * 109.47167 * 299.99611 * 20 19 18 41 41 H 1.08999 * 109.47450 * 60.00307 * 20 19 18 42 42 H 1.07993 * 120.78783 * 359.97438 * 22 21 20 43 43 H 1.07992 * 120.42132 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.61661 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.62073 * 180.31213 * 26 25 24 46 46 H 1.09004 * 109.88325 * 120.69917 * 27 15 14 47 47 H 1.08998 * 109.88676 * 241.71186 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0805 1.2720 0.5410 5 6 1.6475 2.2773 -0.6952 6 7 2.0198 3.4958 -0.3652 7 14 0.4431 2.0167 -2.0992 8 1 -0.9456 2.1631 -1.5937 9 1 0.6930 3.0258 -3.1595 10 1 0.6244 0.6537 -2.6604 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7290 -2.1780 -1.1662 14 6 2.0620 -3.5880 -0.6119 15 7 1.7542 -3.5071 0.8275 16 6 1.4459 -4.5491 1.6248 17 8 1.2151 -4.3652 2.8012 18 6 1.3881 -5.9429 1.0544 19 6 1.0201 -6.9322 2.1620 20 6 0.9608 -8.3471 1.5828 21 6 0.5977 -9.3216 2.6735 22 6 -0.7309 -9.6243 2.9309 23 6 -1.0179 -10.5259 3.9441 24 6 0.0225 -11.0887 4.6594 25 7 1.2745 -10.7773 4.3869 26 6 1.5847 -9.9287 3.4263 27 6 1.8454 -2.1021 1.2508 28 1 -0.3634 -0.0301 1.0272 29 1 -0.3633 0.9046 -0.4876 30 1 -0.3633 -0.8746 -0.5397 31 1 1.6685 4.2585 -0.8509 32 1 0.6593 -2.0667 -1.3430 33 1 2.2965 -1.9722 -2.0739 34 1 3.1170 -3.8178 -0.7618 35 1 1.4370 -4.3412 -1.0917 36 1 2.3613 -6.2067 0.6406 37 1 0.6357 -5.9822 0.2668 38 1 0.0470 -6.6685 2.5761 39 1 1.7729 -6.8928 2.9492 40 1 0.2077 -8.3862 0.7957 41 1 1.9337 -8.6112 1.1683 42 1 -1.5232 -9.1679 2.3562 43 1 -2.0412 -10.7852 4.1717 44 1 -0.1927 -11.7916 5.4506 45 1 2.6220 -9.7019 3.2288 46 1 0.8884 -1.7745 1.6572 47 1 2.6252 -1.9917 2.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193112752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:35 Heat of formation + Delta-G solvation = 22.036430 kcal Electronic energy + Delta-G solvation = -25666.479996 eV Core-core repulsion = 22042.808598 eV Total energy + Delta-G solvation = -3623.671398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52963 -39.90239 -37.74704 -35.56641 -34.99189 -32.64424 -31.99217 -31.57657 -30.20163 -28.65354 -27.28471 -26.20663 -24.19480 -23.89898 -22.81762 -22.46896 -21.37388 -19.41624 -19.03560 -17.45759 -17.06919 -16.90432 -16.82570 -16.32597 -15.72541 -15.58183 -15.02100 -14.67268 -14.38276 -14.11986 -13.81139 -13.64733 -13.39497 -13.19055 -13.15255 -12.84202 -12.59427 -12.49005 -12.32951 -12.09848 -11.91480 -11.87773 -11.58068 -11.45575 -11.00980 -10.99807 -10.91647 -10.56563 -10.23738 -10.12256 -9.98702 -9.79231 -9.68721 -9.62374 -9.27011 -8.60652 -8.43506 -6.97990 -6.06485 -3.48120 0.76344 0.94301 2.74805 3.11002 3.25553 3.40700 3.44791 3.47722 4.09647 4.36038 4.43122 4.44563 4.47708 4.62253 4.65363 4.76740 4.83058 4.89392 4.97689 5.05541 5.13036 5.18353 5.29766 5.35778 5.36703 5.40048 5.41877 5.49607 5.65245 5.70055 5.73721 5.79015 5.84683 6.01372 6.06034 6.06379 6.18589 6.29912 6.36572 6.36778 6.45685 6.58775 6.66932 6.75327 7.64261 7.69794 7.93787 8.27408 8.30593 8.86877 9.61640 9.99515 11.08657 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036037 B = 0.002047 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.801082 B =13673.848462 C =13726.441938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.596 5.596 3 C -0.274 4.274 4 H 0.082 0.918 5 C 0.035 3.965 6 N -0.897 5.897 7 Si 0.886 3.114 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.172 3.828 12 H 0.089 0.911 13 C -0.158 4.158 14 C 0.101 3.899 15 N -0.615 5.615 16 C 0.521 3.479 17 O -0.547 6.547 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.074 4.074 23 C -0.171 4.171 24 C 0.089 3.911 25 N -0.485 5.485 26 C 0.101 3.899 27 C 0.088 3.912 28 H 0.018 0.982 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 -27.639 0.473 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.318 5.318 3 C -0.403 4.403 4 H 0.100 0.900 5 C -0.166 4.166 6 N -0.538 5.538 7 Si 0.717 3.283 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.063 3.937 12 H 0.107 0.893 13 C -0.198 4.198 14 C -0.022 4.022 15 N -0.350 5.350 16 C 0.310 3.690 17 O -0.425 6.425 18 C -0.175 4.175 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.190 4.190 24 C -0.068 4.068 25 N -0.193 5.193 26 C -0.056 4.056 27 C -0.036 4.036 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.376 -27.756 1.623 28.007 hybrid contribution -1.501 0.460 -1.377 2.088 sum -4.876 -27.296 0.245 27.729 Atomic orbital electron populations 1.21351 0.84821 0.99061 0.98487 1.44002 1.00526 1.01410 1.85880 1.18801 1.08174 0.86264 1.27028 0.90031 1.25426 0.98229 0.95151 0.97823 1.69868 1.45974 0.97661 1.40261 0.86827 0.80389 0.77629 0.83498 1.21557 1.23057 1.19440 1.21458 0.97029 0.85359 0.89882 0.89336 1.23430 1.02622 0.93387 1.00350 1.22380 1.00269 0.98983 0.80612 1.48578 1.68350 1.07827 1.10197 1.20318 0.76771 0.85961 0.85947 1.90706 1.49963 1.85528 1.16254 1.21648 1.03964 0.91980 0.99904 1.21322 1.03513 0.91384 0.97409 1.20599 1.02729 0.92905 0.95331 1.20922 0.94227 0.98791 0.99125 1.21542 0.96297 0.95699 0.96446 1.22162 1.01010 0.98579 0.97294 1.22766 0.87925 0.97838 0.98221 1.67688 1.21747 1.13801 1.16043 1.22717 0.99783 0.92255 0.90869 1.22691 1.02187 0.79291 0.99470 0.96366 0.93519 0.94875 0.92583 0.90697 0.90043 0.91307 0.91225 0.88922 0.89039 0.91037 0.90877 0.90565 0.90347 0.84826 0.84809 0.82892 0.82807 0.91220 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.47 59.85 0.51 2.80 16 2 N -0.60 -13.57 2.53 -171.39 -0.43 -14.01 16 3 C -0.27 -7.43 9.88 -15.06 -0.15 -7.57 16 4 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 5 C 0.03 0.97 5.31 -17.43 -0.09 0.88 16 6 N -0.90 -26.85 13.97 55.49 0.78 -26.08 16 7 Si 0.89 21.61 24.94 -169.99 -4.24 17.38 16 8 H -0.29 -6.89 6.67 56.52 0.38 -6.51 16 9 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.17 3.15 3.43 -66.10 -0.23 2.92 16 12 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 13 C -0.16 -2.33 6.62 -24.47 -0.16 -2.49 16 14 C 0.10 1.16 6.70 -2.42 -0.02 1.14 16 15 N -0.62 -8.92 3.32 -170.38 -0.57 -9.49 16 16 C 0.52 7.49 7.85 -10.98 -0.09 7.40 16 17 O -0.55 -10.13 16.31 5.56 0.09 -10.04 16 18 C -0.13 -1.22 4.70 -27.88 -0.13 -1.36 16 19 C -0.10 -0.89 4.49 -26.73 -0.12 -1.01 16 20 C -0.08 -0.50 5.37 -27.88 -0.15 -0.65 16 21 C -0.13 -1.03 5.15 -104.48 -0.54 -1.57 16 22 C -0.07 -0.55 9.86 -39.27 -0.39 -0.94 16 23 C -0.17 -1.21 10.11 -39.44 -0.40 -1.60 16 24 C 0.09 0.73 11.18 -17.54 -0.20 0.54 16 25 N -0.48 -4.99 10.36 -13.25 -0.14 -5.12 16 26 C 0.10 0.91 10.86 -17.55 -0.19 0.72 16 27 C 0.09 1.54 6.51 -3.07 -0.02 1.52 16 28 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 29 H 0.05 1.08 3.05 -51.93 -0.16 0.92 16 30 H 0.03 0.62 6.00 -51.93 -0.31 0.30 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.17 6.03 -51.93 -0.31 0.86 16 33 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 38 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.07 1.36 6.97 -51.93 -0.36 1.00 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -33.77 375.55 -8.62 -42.38 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.41 Total: -1.41 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.36 Total: 0.73 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.36 Total: -54.69 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.24 Total: 17.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.77 -8.62 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193112752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.420 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds