Wall clock time and date at job start Tue Mar 31 2020 11:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36931 * 120.00074 * 2 1 4 4 H 1.08005 * 120.00010 * 144.66103 * 3 2 1 5 5 C 1.38809 * 120.00406 * 324.66781 * 3 2 1 6 6 N 1.31615 * 120.00616 * 157.56130 * 5 3 2 7 7 Si 1.86809 * 119.99621 * 337.55904 * 5 3 2 8 8 H 1.48502 * 109.46790 * 95.53371 * 7 5 3 9 9 H 1.48493 * 109.47140 * 215.53745 * 7 5 3 10 10 H 1.48507 * 109.47099 * 335.53728 * 7 5 3 11 11 C 1.46502 * 119.99752 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.63608 * 176.85863 * 11 2 1 13 13 C 1.55156 * 110.87191 * 53.61663 * 11 2 1 14 14 C 1.55124 * 101.48855 * 205.89565 * 13 11 2 15 15 N 1.47420 * 104.72227 * 37.29186 * 14 13 11 16 16 C 1.34783 * 125.65134 * 155.81571 * 15 14 13 17 17 O 1.21281 * 120.00219 * 179.69282 * 16 15 14 18 18 C 1.50707 * 119.99661 * 359.69809 * 16 15 14 19 19 C 1.52996 * 109.46797 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46661 * 179.97438 * 19 18 16 21 21 C 1.50700 * 109.47070 * 180.02562 * 20 19 18 22 22 C 1.38674 * 120.41967 * 89.99817 * 21 20 19 23 23 C 1.38633 * 118.42200 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.15868 * 0.02562 * 23 22 21 25 25 N 1.31859 * 120.76277 * 359.97438 * 24 23 22 26 26 C 1.31881 * 121.72863 * 359.70341 * 25 24 23 27 27 C 1.47019 * 108.70475 * 335.55638 * 15 14 13 28 28 H 1.09001 * 109.47544 * 268.32361 * 1 2 3 29 29 H 1.09001 * 109.46842 * 28.32575 * 1 2 3 30 30 H 1.09003 * 109.46815 * 148.32277 * 1 2 3 31 31 H 0.97000 * 119.99892 * 180.02562 * 6 5 3 32 32 H 1.09000 * 111.00571 * 324.13533 * 13 11 2 33 33 H 1.09007 * 111.00175 * 87.94596 * 13 11 2 34 34 H 1.09004 * 110.49734 * 278.45465 * 14 13 11 35 35 H 1.09001 * 110.34806 * 156.06207 * 14 13 11 36 36 H 1.08998 * 109.46775 * 59.99524 * 18 16 15 37 37 H 1.08997 * 109.47001 * 300.00068 * 18 16 15 38 38 H 1.08994 * 109.47138 * 60.00395 * 19 18 16 39 39 H 1.08994 * 109.47163 * 299.99875 * 19 18 16 40 40 H 1.09003 * 109.47167 * 299.99611 * 20 19 18 41 41 H 1.08999 * 109.47450 * 60.00307 * 20 19 18 42 42 H 1.07993 * 120.78783 * 359.97438 * 22 21 20 43 43 H 1.07992 * 120.42132 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.61661 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.62073 * 180.31213 * 26 25 24 46 46 H 1.09004 * 109.88325 * 120.69917 * 27 15 14 47 47 H 1.08998 * 109.88676 * 241.71186 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0805 1.2720 0.5410 5 6 1.6475 2.2773 -0.6952 6 7 2.0198 3.4958 -0.3652 7 14 0.4431 2.0167 -2.0992 8 1 -0.9456 2.1631 -1.5937 9 1 0.6930 3.0258 -3.1595 10 1 0.6244 0.6537 -2.6604 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7290 -2.1780 -1.1662 14 6 2.0620 -3.5880 -0.6119 15 7 1.7542 -3.5071 0.8275 16 6 1.4459 -4.5491 1.6248 17 8 1.2151 -4.3652 2.8012 18 6 1.3881 -5.9429 1.0544 19 6 1.0201 -6.9322 2.1620 20 6 0.9608 -8.3471 1.5828 21 6 0.5977 -9.3216 2.6735 22 6 -0.7309 -9.6243 2.9309 23 6 -1.0179 -10.5259 3.9441 24 6 0.0225 -11.0887 4.6594 25 7 1.2745 -10.7773 4.3869 26 6 1.5847 -9.9287 3.4263 27 6 1.8454 -2.1021 1.2508 28 1 -0.3634 -0.0301 1.0272 29 1 -0.3633 0.9046 -0.4876 30 1 -0.3633 -0.8746 -0.5397 31 1 1.6685 4.2585 -0.8509 32 1 0.6593 -2.0667 -1.3430 33 1 2.2965 -1.9722 -2.0739 34 1 3.1170 -3.8178 -0.7618 35 1 1.4370 -4.3412 -1.0917 36 1 2.3613 -6.2067 0.6406 37 1 0.6357 -5.9822 0.2668 38 1 0.0470 -6.6685 2.5761 39 1 1.7729 -6.8928 2.9492 40 1 0.2077 -8.3862 0.7957 41 1 1.9337 -8.6112 1.1683 42 1 -1.5232 -9.1679 2.3562 43 1 -2.0412 -10.7852 4.1717 44 1 -0.1927 -11.7916 5.4506 45 1 2.6220 -9.7019 3.2288 46 1 0.8884 -1.7745 1.6572 47 1 2.6252 -1.9917 2.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193112752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:34 Heat of formation + Delta-G solvation = 0.316687 kcal Electronic energy + Delta-G solvation = -25667.421835 eV Core-core repulsion = 22042.808598 eV Total energy + Delta-G solvation = -3624.613236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20611 -40.96082 -39.08454 -36.65098 -36.21053 -33.84752 -33.22963 -32.41042 -31.49762 -29.83782 -28.25074 -27.92248 -25.47031 -24.46914 -24.08844 -23.48864 -21.98563 -20.91918 -20.09113 -18.99135 -18.14090 -17.91852 -17.80571 -17.40790 -16.89474 -16.58468 -16.10614 -15.77263 -15.44947 -15.04387 -14.91348 -14.79225 -14.62413 -14.37894 -14.32882 -14.03164 -13.92112 -13.61700 -13.36647 -13.23303 -13.05897 -12.81698 -12.60170 -12.47376 -12.40743 -12.36463 -12.13977 -12.03026 -11.62706 -11.60066 -11.41158 -10.91183 -10.69381 -10.66236 -10.35182 -9.84469 -9.63101 -8.87812 -8.21530 -5.60520 0.19983 0.37944 1.32533 1.42799 1.55049 1.67288 2.01440 2.41868 2.88505 3.01701 3.29582 3.55029 3.59047 3.78321 3.80601 3.94363 4.01393 4.10573 4.11782 4.23395 4.26927 4.29417 4.33886 4.40117 4.51113 4.55075 4.62037 4.68511 4.70570 4.78036 4.81129 4.85852 4.87015 4.96988 5.01105 5.01679 5.14472 5.23323 5.25893 5.26256 5.36899 5.42977 5.46602 5.83909 5.88369 6.14090 6.61781 6.90997 7.05877 7.19742 7.57340 7.98163 8.97752 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036037 B = 0.002047 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.801082 B =13673.848462 C =13726.441938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.609 5.609 3 C -0.266 4.266 4 H 0.042 0.958 5 C -0.026 4.026 6 N -0.949 5.949 7 Si 0.955 3.045 8 H -0.280 1.280 9 H -0.310 1.310 10 H -0.245 1.245 11 C 0.164 3.836 12 H 0.079 0.921 13 C -0.149 4.149 14 C 0.107 3.893 15 N -0.616 5.616 16 C 0.513 3.487 17 O -0.600 6.600 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.067 4.067 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.172 4.172 24 C 0.072 3.928 25 N -0.519 5.519 26 C 0.080 3.920 27 C 0.098 3.902 28 H 0.013 0.987 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.163 0.837 46 H 0.045 0.955 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -30.971 -2.422 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.060 0.940 5 C -0.222 4.222 6 N -0.593 5.593 7 Si 0.784 3.216 8 H -0.208 1.208 9 H -0.239 1.239 10 H -0.168 1.168 11 C 0.057 3.943 12 H 0.098 0.902 13 C -0.189 4.189 14 C -0.014 4.014 15 N -0.350 5.350 16 C 0.305 3.695 17 O -0.482 6.482 18 C -0.161 4.161 19 C -0.131 4.131 20 C -0.104 4.104 21 C -0.138 4.138 22 C -0.109 4.109 23 C -0.191 4.191 24 C -0.084 4.084 25 N -0.227 5.227 26 C -0.076 4.076 27 C -0.028 4.028 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.188 0.812 45 H 0.180 0.820 46 H 0.063 0.937 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.795 -31.159 -1.300 31.553 hybrid contribution -1.010 1.468 -0.296 1.807 sum -5.805 -29.691 -1.595 30.295 Atomic orbital electron populations 1.21385 0.83913 0.99769 0.98641 1.44041 1.01222 1.01585 1.86364 1.18671 1.06898 0.88256 1.25686 0.94024 1.26117 1.01114 0.94616 1.00362 1.70012 1.48777 0.98679 1.41815 0.85703 0.78102 0.78312 0.79513 1.20807 1.23890 1.16837 1.21560 0.96310 0.84296 0.92180 0.90232 1.23329 1.02450 0.94147 0.98928 1.22601 1.02762 0.97874 0.78205 1.48682 1.68259 1.06248 1.11776 1.21414 0.75158 0.87656 0.85302 1.90689 1.52172 1.86457 1.18844 1.21713 1.06715 0.87568 1.00119 1.21228 1.01567 0.93224 0.97116 1.20557 1.04492 0.90375 0.95008 1.21132 0.94315 0.98915 0.99400 1.21914 0.96730 0.95647 0.96655 1.22475 1.01962 0.97945 0.96720 1.23173 0.87778 0.98443 0.99020 1.67659 1.23052 1.14939 1.17094 1.22990 1.00754 0.92661 0.91193 1.22289 1.00061 0.81833 0.98623 0.96847 0.95060 0.91405 0.92738 0.90903 0.88777 0.88892 0.86860 0.85784 0.85792 0.93120 0.93279 0.88409 0.88533 0.82844 0.82336 0.81182 0.81968 0.93702 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.43 8.47 127.77 1.08 5.51 16 2 N -0.61 -27.61 2.53 -696.15 -1.76 -29.38 16 3 C -0.27 -14.79 9.88 84.03 0.83 -13.96 16 4 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 5 C -0.03 -1.47 5.31 84.86 0.45 -1.02 16 6 N -0.95 -58.86 13.97 21.65 0.30 -58.56 16 7 Si 0.96 44.56 24.94 68.60 1.71 46.27 16 8 H -0.28 -12.66 6.67 99.48 0.66 -12.00 16 9 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 10 H -0.24 -10.33 7.11 99.48 0.71 -9.63 16 11 C 0.16 5.87 3.43 46.18 0.16 6.02 16 12 H 0.08 2.95 7.95 -2.39 -0.02 2.93 16 13 C -0.15 -3.80 6.62 32.06 0.21 -3.59 16 14 C 0.11 1.90 6.70 86.93 0.58 2.48 16 15 N -0.62 -16.25 3.32 -811.36 -2.70 -18.95 16 16 C 0.51 13.62 7.85 87.66 0.69 14.31 16 17 O -0.60 -22.36 16.31 -3.03 -0.05 -22.41 16 18 C -0.12 -1.67 4.70 29.85 0.14 -1.53 16 19 C -0.09 -1.46 4.49 30.59 0.14 -1.32 16 20 C -0.07 -0.62 5.37 29.85 0.16 -0.46 16 21 C -0.14 -1.91 5.15 -19.77 -0.10 -2.01 16 22 C -0.08 -1.07 9.86 22.47 0.22 -0.84 16 23 C -0.17 -2.13 10.11 22.36 0.23 -1.91 16 24 C 0.07 1.13 11.18 84.69 0.95 2.08 16 25 N -0.52 -10.57 10.36 -195.84 -2.03 -12.60 16 26 C 0.08 1.39 10.86 84.67 0.92 2.31 16 27 C 0.10 3.41 6.51 86.73 0.56 3.98 16 28 H 0.01 0.56 7.84 -2.39 -0.02 0.54 16 29 H 0.03 1.40 3.05 -2.39 -0.01 1.39 16 30 H 0.07 2.32 6.00 -2.39 -0.01 2.31 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.07 1.92 6.03 -2.39 -0.01 1.91 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.16 7.48 -2.39 -0.02 1.14 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 40 H 0.10 0.54 8.09 -2.39 -0.02 0.52 16 41 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.04 1.78 6.97 -2.38 -0.02 1.76 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -79.25 375.55 3.60 -75.65 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.91 Total: 9.93 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 7.22 Total: 10.05 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -6.19 Total: -119.49 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.71 Total: 46.27 kcal Total: -79.25 3.60 -75.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193112752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.963 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds