Wall clock time and date at job start Tue Mar 31 2020 11:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00035 * 2 1 4 4 H 1.07993 * 119.99754 * 148.75214 * 3 2 1 5 5 C 1.38804 * 119.99708 * 328.75025 * 3 2 1 6 6 N 1.31624 * 119.99953 * 153.54074 * 5 3 2 7 7 Si 1.86797 * 120.00465 * 333.53624 * 5 3 2 8 8 H 1.48507 * 109.46992 * 94.76575 * 7 5 3 9 9 H 1.48500 * 109.47472 * 214.76785 * 7 5 3 10 10 H 1.48497 * 109.46901 * 334.76865 * 7 5 3 11 11 C 1.46505 * 119.99673 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88545 * 182.42503 * 11 2 1 13 13 C 1.55153 * 111.00628 * 58.54290 * 11 2 1 14 14 C 1.54320 * 102.94564 * 206.38320 * 13 11 2 15 15 N 1.47023 * 107.27014 * 22.19203 * 14 13 11 16 16 C 1.34771 * 125.65146 * 181.09943 * 15 14 13 17 17 O 1.21281 * 120.00555 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99806 * 359.95486 * 16 15 14 19 19 C 1.53004 * 109.47058 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47173 * 180.02562 * 19 18 16 21 21 C 1.50699 * 109.47078 * 180.02562 * 20 19 18 22 22 C 1.38225 * 119.61959 * 124.99974 * 21 20 19 23 23 C 1.38624 * 119.16081 * 179.97438 * 22 21 20 24 24 C 1.38671 * 118.42278 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16086 * 359.97438 * 24 23 22 26 26 N 1.31854 * 119.61602 * 304.72178 * 21 20 19 27 27 C 1.47428 * 108.70031 * 1.06153 * 15 14 13 28 28 H 1.09006 * 109.46982 * 275.57442 * 1 2 3 29 29 H 1.08998 * 109.47493 * 35.57727 * 1 2 3 30 30 H 1.09001 * 109.47380 * 155.57689 * 1 2 3 31 31 H 0.96999 * 120.00504 * 179.97438 * 6 5 3 32 32 H 1.08999 * 110.72313 * 324.74879 * 13 11 2 33 33 H 1.09008 * 110.72020 * 88.02382 * 13 11 2 34 34 H 1.08996 * 109.88648 * 141.61203 * 14 13 11 35 35 H 1.09000 * 109.88594 * 262.78016 * 14 13 11 36 36 H 1.09001 * 109.47207 * 299.99357 * 18 16 15 37 37 H 1.08997 * 109.47256 * 59.99987 * 18 16 15 38 38 H 1.09001 * 109.46890 * 299.99923 * 19 18 16 39 39 H 1.09001 * 109.47395 * 59.99654 * 19 18 16 40 40 H 1.09004 * 109.46574 * 299.99970 * 20 19 18 41 41 H 1.08997 * 109.47041 * 59.99786 * 20 19 18 42 42 H 1.08001 * 120.41776 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.79040 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.41967 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.61531 * 180.02562 * 25 24 23 46 46 H 1.08999 * 110.36491 * 217.03019 * 27 15 14 47 47 H 1.09003 * 110.45910 * 94.75943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1121 1.2537 0.4852 5 6 1.6067 2.3007 -0.6236 6 7 1.9407 3.5084 -0.2204 7 14 0.4020 2.0874 -2.0352 8 1 -0.9871 2.1369 -1.5122 9 1 0.5983 3.1788 -3.0229 10 1 0.6369 0.7767 -2.6925 11 6 2.1975 -1.2688 -0.0006 12 1 3.2730 -1.0967 0.0426 13 6 1.8209 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7517 15 7 2.0434 -3.5498 0.7177 16 6 2.2500 -4.6102 1.5234 17 8 2.1866 -4.4786 2.7274 18 6 2.5593 -5.9597 0.9282 19 6 2.7490 -6.9811 2.0515 20 6 3.0637 -8.3511 1.4472 21 6 3.2500 -9.3573 2.5536 22 6 2.4931 -10.5139 2.5597 23 6 2.6725 -11.4332 3.5816 24 6 3.6104 -11.1533 4.5640 25 6 4.3303 -9.9760 4.4918 26 7 4.1370 -9.1267 3.5015 27 6 1.7337 -2.1792 1.1638 28 1 -0.3633 0.0998 1.0229 29 1 -0.3634 0.8358 -0.5979 30 1 -0.3634 -0.9357 -0.4249 31 1 1.5615 4.2875 -0.6564 32 1 0.7692 -1.9971 -1.4911 33 1 2.4580 -1.8814 -2.0860 34 1 1.3237 -4.2390 -1.1388 35 1 3.0750 -3.8939 -1.0870 36 1 1.7343 -6.2722 0.2880 37 1 3.4733 -5.8956 0.3378 38 1 3.5742 -6.6684 2.6913 39 1 1.8353 -7.0454 2.6423 40 1 2.2388 -8.6640 0.8071 41 1 3.9776 -8.2865 0.8567 42 1 1.7710 -10.6990 1.7782 43 1 2.0956 -12.3457 3.6120 44 1 3.7767 -11.8471 5.3748 45 1 5.0629 -9.7508 5.2528 46 1 2.2858 -1.9425 2.0734 47 1 0.6625 -2.0657 1.3307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193601324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:28 Heat of formation + Delta-G solvation = 25.335053 kcal Electronic energy + Delta-G solvation = -25603.763401 eV Core-core repulsion = 21980.235042 eV Total energy + Delta-G solvation = -3623.528359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52917 -39.84353 -37.68167 -35.20981 -34.95917 -32.71794 -32.01106 -31.57127 -30.19298 -28.65308 -27.38287 -26.23117 -24.25623 -23.79154 -22.78124 -22.37315 -21.24336 -19.45383 -18.93797 -17.27232 -17.08291 -16.85994 -16.54674 -16.24779 -15.79896 -15.62943 -14.99989 -14.86735 -14.41417 -13.92706 -13.74872 -13.62387 -13.38722 -13.25494 -13.03571 -12.63594 -12.51809 -12.39934 -12.31881 -12.06929 -11.91299 -11.80334 -11.52235 -11.42221 -10.99191 -10.89137 -10.82082 -10.56103 -10.20156 -10.17888 -9.98056 -9.73403 -9.60662 -9.54124 -9.27426 -8.57535 -8.37353 -7.00422 -6.04768 -3.39403 0.77572 0.95243 2.81410 3.15498 3.27969 3.43815 3.47659 3.48234 3.97988 4.30133 4.48021 4.50836 4.57230 4.71786 4.77419 4.78294 4.88236 4.92768 5.09957 5.13341 5.19955 5.26143 5.29023 5.36097 5.39389 5.46569 5.48772 5.55918 5.70099 5.73267 5.76540 5.83260 5.89553 6.04558 6.08665 6.21612 6.25202 6.29415 6.38557 6.41127 6.47892 6.61619 6.69096 6.77244 7.71239 7.75174 7.93257 8.28768 8.36171 8.89400 9.65309 10.01422 11.10703 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040650 B = 0.002017 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.639674 B =13876.669098 C =14177.135780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.595 5.595 3 C -0.273 4.273 4 H 0.083 0.917 5 C 0.034 3.966 6 N -0.893 5.893 7 Si 0.882 3.118 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.172 3.828 12 H 0.087 0.913 13 C -0.158 4.158 14 C 0.104 3.896 15 N -0.617 5.617 16 C 0.524 3.476 17 O -0.545 6.545 18 C -0.135 4.135 19 C -0.095 4.095 20 C -0.071 4.071 21 C 0.135 3.865 22 C -0.173 4.173 23 C -0.075 4.075 24 C -0.183 4.183 25 C 0.104 3.896 26 N -0.478 5.478 27 C 0.088 3.912 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.156 0.844 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -30.071 1.254 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.317 5.317 3 C -0.401 4.401 4 H 0.101 0.899 5 C -0.167 4.167 6 N -0.534 5.534 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.232 1.232 10 H -0.197 1.197 11 C 0.063 3.937 12 H 0.105 0.895 13 C -0.198 4.198 14 C -0.020 4.020 15 N -0.351 5.351 16 C 0.312 3.688 17 O -0.423 6.423 18 C -0.175 4.175 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.003 4.003 22 C -0.193 4.193 23 C -0.101 4.101 24 C -0.203 4.203 25 C -0.053 4.053 26 N -0.188 5.188 27 C -0.036 4.036 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.173 0.827 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.355 -29.070 1.899 29.163 hybrid contribution -1.320 -0.858 -0.890 1.808 sum 0.036 -29.928 1.009 29.945 Atomic orbital electron populations 1.21349 0.84633 0.98690 0.98941 1.43984 1.00588 1.01358 1.85769 1.18799 1.05411 0.85216 1.30690 0.89906 1.25307 0.98244 0.94976 0.98168 1.69923 1.45787 0.97577 1.40122 0.86917 0.80461 0.77185 0.84126 1.21514 1.23151 1.19672 1.21559 0.96905 0.85141 0.90118 0.89453 1.23290 1.02707 0.92949 1.00899 1.22031 1.00886 0.98958 0.80099 1.48536 1.69709 1.09627 1.07241 1.20306 0.76760 0.85248 0.86440 1.90705 1.51958 1.85063 1.14542 1.21654 1.03622 0.92450 0.99769 1.21237 1.03695 0.91332 0.97031 1.20607 1.02743 0.93177 0.94353 1.21305 0.91075 0.93560 0.94311 1.22013 1.01614 0.95379 1.00275 1.21588 0.96276 0.98881 0.93322 1.22145 0.98378 0.99304 1.00464 1.22803 0.97315 0.89894 0.95338 1.67506 1.17369 1.31702 1.02181 1.22857 1.00780 0.80043 0.99909 0.96014 0.94188 0.94545 0.92624 0.90852 0.90198 0.92040 0.91598 0.89191 0.88903 0.89921 0.91436 0.90240 0.89726 0.84811 0.84939 0.84903 0.82723 0.90636 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 8.37 59.85 0.50 2.82 16 2 N -0.60 -13.72 2.62 -171.03 -0.45 -14.17 16 3 C -0.27 -7.48 9.89 -15.06 -0.15 -7.63 16 4 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 5 C 0.03 0.96 5.29 -17.43 -0.09 0.87 16 6 N -0.89 -26.94 13.97 55.49 0.78 -26.16 16 7 Si 0.88 21.76 25.09 -169.99 -4.26 17.50 16 8 H -0.29 -6.91 6.61 56.52 0.37 -6.54 16 9 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 C 0.17 3.25 3.53 -65.78 -0.23 3.02 16 12 H 0.09 1.70 7.96 -51.93 -0.41 1.29 16 13 C -0.16 -2.41 6.49 -24.90 -0.16 -2.58 16 14 C 0.10 1.26 6.49 -3.07 -0.02 1.24 16 15 N -0.62 -9.30 3.33 -170.52 -0.57 -9.87 16 16 C 0.52 7.93 7.85 -10.99 -0.09 7.84 16 17 O -0.55 -10.51 16.24 5.56 0.09 -10.42 16 18 C -0.13 -1.37 4.89 -27.88 -0.14 -1.51 16 19 C -0.09 -1.01 4.36 -26.73 -0.12 -1.13 16 20 C -0.07 -0.57 5.61 -27.88 -0.16 -0.73 16 21 C 0.14 1.29 6.17 -82.59 -0.51 0.78 16 22 C -0.17 -1.31 9.71 -39.44 -0.38 -1.69 16 23 C -0.07 -0.50 10.18 -39.28 -0.40 -0.90 16 24 C -0.18 -1.26 10.11 -39.44 -0.40 -1.66 16 25 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 26 N -0.48 -5.27 9.89 -9.47 -0.09 -5.37 16 27 C 0.09 1.57 6.47 -2.53 -0.02 1.56 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.93 2.54 -51.93 -0.13 0.80 16 30 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.07 1.16 6.37 -51.93 -0.33 0.83 16 33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.09 7.91 -51.93 -0.41 0.67 16 39 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.13 0.70 7.95 -52.49 -0.42 0.28 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 47 H 0.07 1.20 7.05 -51.93 -0.37 0.83 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -34.10 376.20 -8.85 -42.95 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.46 Total: -1.15 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.55 Total: 1.02 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.33 Total: -55.56 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.26 Total: 17.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.10 -8.85 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193601324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.290 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds