Wall clock time and date at job start Tue Mar 31 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00035 * 2 1 4 4 H 1.07993 * 119.99754 * 148.75214 * 3 2 1 5 5 C 1.38804 * 119.99708 * 328.75025 * 3 2 1 6 6 N 1.31624 * 119.99953 * 153.54074 * 5 3 2 7 7 Si 1.86797 * 120.00465 * 333.53624 * 5 3 2 8 8 H 1.48507 * 109.46992 * 94.76575 * 7 5 3 9 9 H 1.48500 * 109.47472 * 214.76785 * 7 5 3 10 10 H 1.48497 * 109.46901 * 334.76865 * 7 5 3 11 11 C 1.46505 * 119.99673 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88545 * 182.42503 * 11 2 1 13 13 C 1.55153 * 111.00628 * 58.54290 * 11 2 1 14 14 C 1.54320 * 102.94564 * 206.38320 * 13 11 2 15 15 N 1.47023 * 107.27014 * 22.19203 * 14 13 11 16 16 C 1.34771 * 125.65146 * 181.09943 * 15 14 13 17 17 O 1.21281 * 120.00555 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99806 * 359.95486 * 16 15 14 19 19 C 1.53004 * 109.47058 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47173 * 180.02562 * 19 18 16 21 21 C 1.50699 * 109.47078 * 180.02562 * 20 19 18 22 22 C 1.38225 * 119.61959 * 124.99974 * 21 20 19 23 23 C 1.38624 * 119.16081 * 179.97438 * 22 21 20 24 24 C 1.38671 * 118.42278 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16086 * 359.97438 * 24 23 22 26 26 N 1.31854 * 119.61602 * 304.72178 * 21 20 19 27 27 C 1.47428 * 108.70031 * 1.06153 * 15 14 13 28 28 H 1.09006 * 109.46982 * 275.57442 * 1 2 3 29 29 H 1.08998 * 109.47493 * 35.57727 * 1 2 3 30 30 H 1.09001 * 109.47380 * 155.57689 * 1 2 3 31 31 H 0.96999 * 120.00504 * 179.97438 * 6 5 3 32 32 H 1.08999 * 110.72313 * 324.74879 * 13 11 2 33 33 H 1.09008 * 110.72020 * 88.02382 * 13 11 2 34 34 H 1.08996 * 109.88648 * 141.61203 * 14 13 11 35 35 H 1.09000 * 109.88594 * 262.78016 * 14 13 11 36 36 H 1.09001 * 109.47207 * 299.99357 * 18 16 15 37 37 H 1.08997 * 109.47256 * 59.99987 * 18 16 15 38 38 H 1.09001 * 109.46890 * 299.99923 * 19 18 16 39 39 H 1.09001 * 109.47395 * 59.99654 * 19 18 16 40 40 H 1.09004 * 109.46574 * 299.99970 * 20 19 18 41 41 H 1.08997 * 109.47041 * 59.99786 * 20 19 18 42 42 H 1.08001 * 120.41776 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.79040 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.41967 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.61531 * 180.02562 * 25 24 23 46 46 H 1.08999 * 110.36491 * 217.03019 * 27 15 14 47 47 H 1.09003 * 110.45910 * 94.75943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1121 1.2537 0.4852 5 6 1.6067 2.3007 -0.6236 6 7 1.9407 3.5084 -0.2204 7 14 0.4020 2.0874 -2.0352 8 1 -0.9871 2.1369 -1.5122 9 1 0.5983 3.1788 -3.0229 10 1 0.6369 0.7767 -2.6925 11 6 2.1975 -1.2688 -0.0006 12 1 3.2730 -1.0967 0.0426 13 6 1.8209 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7517 15 7 2.0434 -3.5498 0.7177 16 6 2.2500 -4.6102 1.5234 17 8 2.1866 -4.4786 2.7274 18 6 2.5593 -5.9597 0.9282 19 6 2.7490 -6.9811 2.0515 20 6 3.0637 -8.3511 1.4472 21 6 3.2500 -9.3573 2.5536 22 6 2.4931 -10.5139 2.5597 23 6 2.6725 -11.4332 3.5816 24 6 3.6104 -11.1533 4.5640 25 6 4.3303 -9.9760 4.4918 26 7 4.1370 -9.1267 3.5015 27 6 1.7337 -2.1792 1.1638 28 1 -0.3633 0.0998 1.0229 29 1 -0.3634 0.8358 -0.5979 30 1 -0.3634 -0.9357 -0.4249 31 1 1.5615 4.2875 -0.6564 32 1 0.7692 -1.9971 -1.4911 33 1 2.4580 -1.8814 -2.0860 34 1 1.3237 -4.2390 -1.1388 35 1 3.0750 -3.8939 -1.0870 36 1 1.7343 -6.2722 0.2880 37 1 3.4733 -5.8956 0.3378 38 1 3.5742 -6.6684 2.6913 39 1 1.8353 -7.0454 2.6423 40 1 2.2388 -8.6640 0.8071 41 1 3.9776 -8.2865 0.8567 42 1 1.7710 -10.6990 1.7782 43 1 2.0956 -12.3457 3.6120 44 1 3.7767 -11.8471 5.3748 45 1 5.0629 -9.7508 5.2528 46 1 2.2858 -1.9425 2.0734 47 1 0.6625 -2.0657 1.3307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193601324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:27 Heat of formation + Delta-G solvation = 3.157866 kcal Electronic energy + Delta-G solvation = -25604.725075 eV Core-core repulsion = 21980.235042 eV Total energy + Delta-G solvation = -3624.490034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21348 -40.96092 -39.07838 -36.65975 -35.93025 -33.83230 -33.27735 -32.50171 -31.52811 -29.85203 -28.35022 -28.02331 -25.54076 -24.47836 -24.04125 -23.40394 -21.94231 -21.00048 -20.05643 -19.02983 -18.15175 -17.85409 -17.64922 -17.19994 -16.91081 -16.53022 -16.25138 -15.94815 -15.31625 -15.27823 -14.87450 -14.77547 -14.56885 -14.40007 -14.29303 -14.07362 -13.91919 -13.67841 -13.38349 -13.11166 -12.97645 -12.82361 -12.55567 -12.47683 -12.44219 -12.30629 -12.16460 -12.04082 -11.67714 -11.55336 -11.38924 -10.90924 -10.76313 -10.61776 -10.27753 -9.83921 -9.65297 -8.91352 -8.21858 -5.53727 0.22021 0.41794 1.32692 1.43887 1.55790 1.66271 1.98944 2.42719 2.89479 2.99678 3.29847 3.44095 3.55846 3.77421 3.84545 3.98592 4.05601 4.11446 4.18130 4.22040 4.29904 4.31408 4.34206 4.39972 4.51668 4.54669 4.67691 4.68703 4.71326 4.75855 4.77546 4.86815 4.87775 4.97111 5.00199 5.00347 5.17317 5.22850 5.27432 5.31862 5.35703 5.36158 5.45623 5.86340 5.86598 6.12635 6.60178 6.90338 7.13396 7.18901 7.59208 7.97604 8.97950 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040650 B = 0.002017 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.639674 B =13876.669098 C =14177.135780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.042 0.958 5 C -0.026 4.026 6 N -0.946 5.946 7 Si 0.954 3.046 8 H -0.276 1.276 9 H -0.311 1.311 10 H -0.249 1.249 11 C 0.164 3.836 12 H 0.070 0.930 13 C -0.148 4.148 14 C 0.108 3.892 15 N -0.617 5.617 16 C 0.515 3.485 17 O -0.599 6.599 18 C -0.121 4.121 19 C -0.087 4.087 20 C -0.063 4.063 21 C 0.107 3.893 22 C -0.175 4.175 23 C -0.080 4.080 24 C -0.182 4.182 25 C 0.079 3.921 26 N -0.519 5.519 27 C 0.097 3.903 28 H 0.016 0.984 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.043 0.957 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -34.173 -1.599 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.059 0.941 5 C -0.223 4.223 6 N -0.590 5.590 7 Si 0.783 3.217 8 H -0.204 1.204 9 H -0.240 1.240 10 H -0.173 1.173 11 C 0.056 3.944 12 H 0.089 0.911 13 C -0.188 4.188 14 C -0.014 4.014 15 N -0.351 5.351 16 C 0.307 3.693 17 O -0.480 6.480 18 C -0.160 4.160 19 C -0.126 4.126 20 C -0.100 4.100 21 C -0.030 4.030 22 C -0.195 4.195 23 C -0.105 4.105 24 C -0.202 4.202 25 C -0.078 4.078 26 N -0.229 5.229 27 C -0.028 4.028 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.176 0.824 45 H 0.182 0.818 46 H 0.061 0.939 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.335 -33.241 -0.984 33.257 hybrid contribution -0.715 0.372 0.183 0.826 sum -1.050 -32.869 -0.801 32.895 Atomic orbital electron populations 1.21411 0.83456 1.00056 0.98788 1.44000 1.01428 1.01376 1.86276 1.18668 1.04142 0.87272 1.29503 0.94057 1.25991 1.01277 0.94408 1.00612 1.70061 1.48635 0.98567 1.41725 0.85751 0.78325 0.77615 0.80014 1.20418 1.24041 1.17280 1.21612 0.95711 0.84191 0.92855 0.91134 1.23165 1.02980 0.93788 0.98837 1.22246 1.03984 0.97526 0.77644 1.48630 1.69406 1.08187 1.08831 1.21330 0.75408 0.86729 0.85860 1.90688 1.54215 1.85978 1.17157 1.21700 1.06157 0.88511 0.99649 1.21093 1.01217 0.93397 0.96864 1.20608 1.04254 0.90989 0.94186 1.21661 0.91682 0.94943 0.94700 1.22341 1.01390 0.94675 1.01075 1.22028 0.96080 0.99728 0.92698 1.22456 0.97688 0.98839 1.01168 1.23125 0.98406 0.90741 0.95531 1.67458 1.18858 1.33155 1.03462 1.22500 0.99866 0.82132 0.98331 0.96532 0.95530 0.90703 0.92746 0.90538 0.89241 0.88141 0.88714 0.85412 0.86252 0.93514 0.93573 0.87104 0.88996 0.82230 0.82010 0.82403 0.81847 0.93856 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.39 8.37 127.77 1.07 5.46 16 2 N -0.61 -27.95 2.62 -695.02 -1.82 -29.77 16 3 C -0.27 -15.06 9.89 84.03 0.83 -14.23 16 4 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 5 C -0.03 -1.53 5.29 84.86 0.45 -1.08 16 6 N -0.95 -59.17 13.97 21.65 0.30 -58.87 16 7 Si 0.95 44.94 25.09 68.60 1.72 46.66 16 8 H -0.28 -12.47 6.61 99.48 0.66 -11.81 16 9 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 10 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 11 C 0.16 6.10 3.53 46.38 0.16 6.26 16 12 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 13 C -0.15 -3.96 6.49 31.78 0.21 -3.75 16 14 C 0.11 2.09 6.49 86.73 0.56 2.66 16 15 N -0.62 -17.25 3.33 -811.81 -2.70 -19.95 16 16 C 0.52 14.90 7.85 87.66 0.69 15.59 16 17 O -0.60 -23.76 16.24 -3.03 -0.05 -23.81 16 18 C -0.12 -2.04 4.89 29.85 0.15 -1.90 16 19 C -0.09 -1.78 4.36 30.60 0.13 -1.64 16 20 C -0.06 -0.86 5.61 29.85 0.17 -0.69 16 21 C 0.11 1.92 6.17 42.55 0.26 2.18 16 22 C -0.18 -2.22 9.71 22.36 0.22 -2.01 16 23 C -0.08 -0.86 10.18 22.47 0.23 -0.63 16 24 C -0.18 -2.23 10.11 22.36 0.23 -2.00 16 25 C 0.08 1.37 11.18 84.67 0.95 2.32 16 26 N -0.52 -11.62 9.89 -183.89 -1.82 -13.44 16 27 C 0.10 3.46 6.47 86.85 0.56 4.02 16 28 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.03 1.18 2.54 -2.39 -0.01 1.17 16 30 H 0.07 2.48 6.33 -2.39 -0.02 2.47 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.08 2.03 6.37 -2.39 -0.02 2.02 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.25 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.27 7.91 -2.39 -0.02 1.26 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.11 0.79 7.87 -2.38 -0.02 0.77 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.16 1.06 7.95 -2.91 -0.02 1.04 16 43 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 44 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 47 H 0.06 2.22 7.05 -2.39 -0.02 2.20 16 Total: -1.00 -80.91 376.20 3.39 -77.52 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.90 Total: 11.10 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.86 Total: 10.56 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.04 Total: -122.03 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.72 Total: 46.66 kcal Total: -80.91 3.39 -77.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193601324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.675 kcal (2) G-P(sol) polarization free energy of solvation -80.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds