Wall clock time and date at job start Tue Mar 31 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00208 * 2 1 4 4 C 1.34778 * 119.99835 * 180.02562 * 2 1 3 5 5 O 1.21590 * 120.00127 * 20.67779 * 4 2 1 6 6 N 1.34781 * 119.99783 * 200.68288 * 4 2 1 7 7 C 1.47081 * 120.87761 * 205.58291 * 6 4 2 8 8 C 1.53245 * 108.51547 * 231.20444 * 7 6 4 9 9 N 1.46893 * 109.34070 * 306.16866 * 8 7 6 10 10 C 1.46907 * 110.99755 * 187.25572 * 9 8 7 11 11 C 1.50703 * 109.46727 * 164.34345 * 10 9 8 12 12 C 1.37633 * 120.12805 * 101.14110 * 11 10 9 13 13 C 1.38619 * 120.24773 * 180.24990 * 12 11 10 14 14 C 1.38652 * 120.50147 * 0.04448 * 13 12 11 15 15 C 1.37603 * 120.24881 * 359.95300 * 14 13 12 16 16 C 1.40702 * 120.12588 * 281.41407 * 11 10 9 17 17 C 1.41398 * 120.24495 * 359.74979 * 16 11 10 18 18 H 1.08008 * 119.99671 * 33.62317 * 17 16 11 19 19 C 1.39944 * 120.00262 * 213.62897 * 17 16 11 20 20 N 1.30827 * 119.99806 * 6.05043 * 19 17 16 21 21 Si 1.86798 * 120.00096 * 186.05764 * 19 17 16 22 22 H 1.48502 * 109.47257 * 59.99394 * 21 19 17 23 23 H 1.48499 * 109.47159 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47099 * 299.99323 * 21 19 17 25 25 C 1.46898 * 111.26845 * 63.11104 * 9 8 7 26 26 C 1.47077 * 120.88213 * 25.60167 * 6 4 2 27 27 H 1.08994 * 109.47229 * 270.00234 * 1 2 3 28 28 H 1.09009 * 109.46873 * 30.00059 * 1 2 3 29 29 H 1.09001 * 109.47525 * 149.99849 * 1 2 3 30 30 H 1.09005 * 109.46693 * 267.28857 * 3 2 1 31 31 H 1.08995 * 109.46743 * 27.28763 * 3 2 1 32 32 H 1.09002 * 109.47032 * 147.28945 * 3 2 1 33 33 H 1.09000 * 109.62991 * 111.49818 * 7 6 4 34 34 H 1.08999 * 109.62845 * 350.91411 * 7 6 4 35 35 H 1.09000 * 109.48787 * 186.20930 * 8 7 6 36 36 H 1.08999 * 109.51529 * 66.14964 * 8 7 6 37 37 H 1.08994 * 109.47126 * 44.34040 * 10 9 8 38 38 H 1.08995 * 109.46898 * 284.33692 * 10 9 8 39 39 H 1.07996 * 119.87843 * 0.27620 * 12 11 10 40 40 H 1.07997 * 119.74955 * 180.02562 * 13 12 11 41 41 H 1.08001 * 119.87818 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.12679 * 180.02562 * 15 14 13 43 43 H 0.96997 * 119.99729 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.49481 * 56.85226 * 25 9 8 45 45 H 1.09003 * 109.49451 * 176.93655 * 25 9 8 46 46 H 1.08997 * 109.62708 * 248.50510 * 26 6 4 47 47 H 1.09003 * 109.62671 * 8.89462 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5896 -2.1861 -0.3728 6 7 3.4215 -1.2050 0.4117 7 6 4.3384 -2.2498 -0.0689 8 6 5.0131 -2.9005 1.1435 9 7 5.6370 -1.8589 1.9702 10 6 6.4394 -2.4526 3.0480 11 6 7.3565 -1.4059 3.6264 12 6 7.0373 -0.7878 4.8140 13 6 7.8764 0.1790 5.3456 14 6 9.0445 0.5353 4.6890 15 6 9.3836 -0.0696 3.5005 16 6 8.5395 -1.0527 2.9515 17 6 8.8775 -1.6806 1.7306 18 1 8.0994 -1.9819 1.0448 19 6 10.2202 -1.9119 1.4108 20 7 11.1552 -1.6564 2.2894 21 14 10.6773 -2.5851 -0.2706 22 1 10.2146 -1.6449 -1.3228 23 1 12.1517 -2.7387 -0.3582 24 1 10.0290 -3.9065 -0.4677 25 6 4.6316 -0.9342 2.5107 26 6 3.9413 -0.2028 1.3544 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 2.4213 1.5590 -1.0266 31 1 1.5883 2.0400 0.4711 32 1 3.1280 1.1510 0.5554 33 1 5.0956 -1.8041 -0.7139 34 1 3.7776 -3.0022 -0.6235 35 1 5.7762 -3.6003 0.8029 36 1 4.2671 -3.4342 1.7324 37 1 7.0328 -3.2749 2.6484 38 1 5.7780 -2.8277 3.8290 39 1 6.1298 -1.0573 5.3338 40 1 7.6183 0.6585 6.2782 41 1 9.6907 1.2901 5.1121 42 1 10.2941 0.2092 2.9909 43 1 12.0858 -1.8163 2.0677 44 1 3.8907 -1.4949 3.0805 45 1 5.1182 -0.2077 3.1616 46 1 4.6603 0.4396 0.8461 47 1 3.1184 0.4003 1.7381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:41 Heat of formation + Delta-G solvation = 39.727025 kcal Electronic energy + Delta-G solvation = -27499.955488 eV Core-core repulsion = 23877.051213 eV Total energy + Delta-G solvation = -3622.904276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56625 -38.40932 -37.16718 -35.69967 -34.36804 -33.52527 -31.17098 -30.51938 -29.40765 -28.18120 -27.69069 -25.76101 -25.00207 -23.69051 -23.23104 -20.98804 -20.71594 -19.58735 -19.30268 -17.25916 -17.08033 -16.47952 -16.04001 -15.38536 -14.97722 -14.83921 -14.73604 -14.40286 -14.19630 -14.01680 -13.83896 -13.48801 -13.31471 -12.89556 -12.83597 -12.59601 -12.48397 -12.24242 -11.77619 -11.59549 -11.47866 -11.33525 -11.13770 -11.04674 -10.99571 -10.91968 -10.62121 -10.46332 -10.31553 -9.98878 -9.52049 -9.34418 -9.13534 -8.80935 -8.42746 -7.73934 -7.35948 -7.20408 -6.62403 -4.31295 2.59626 2.81302 2.94406 2.97676 3.11232 3.14411 3.25976 3.71068 4.00506 4.39849 4.74600 4.91783 4.94467 5.09899 5.16095 5.21558 5.30665 5.41011 5.46992 5.52002 5.56556 5.65217 5.67704 5.73168 5.89260 5.98911 6.06511 6.07969 6.15479 6.20945 6.29949 6.33796 6.46435 6.51278 6.67255 6.84092 6.90536 7.16217 7.27768 7.39728 7.55448 7.58494 7.69306 7.85128 7.93041 8.07512 8.17920 8.35510 8.49699 8.72067 8.98996 9.04383 10.32962 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.004059 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.925317 B = 6896.247918 C = 8023.676217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.643 5.643 3 C 0.046 3.954 4 C 0.715 3.285 5 O -0.587 6.587 6 N -0.634 5.634 7 C 0.137 3.863 8 C 0.042 3.958 9 N -0.520 5.520 10 C 0.126 3.874 11 C -0.184 4.184 12 C -0.093 4.093 13 C -0.237 4.237 14 C -0.111 4.111 15 C -0.152 4.152 16 C 0.133 3.867 17 C -0.451 4.451 18 H 0.088 0.912 19 C 0.071 3.929 20 N -0.811 5.811 21 Si 0.907 3.093 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.267 1.267 25 C 0.045 3.955 26 C 0.112 3.888 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.016 0.984 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.026 0.974 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 4.204 -3.264 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.382 5.382 3 C -0.097 4.097 4 C 0.419 3.581 5 O -0.465 6.465 6 N -0.373 5.373 7 C 0.014 3.986 8 C -0.087 4.087 9 N -0.245 5.245 10 C 0.000 4.000 11 C -0.186 4.186 12 C -0.112 4.112 13 C -0.256 4.256 14 C -0.130 4.130 15 C -0.171 4.171 16 C 0.130 3.870 17 C -0.481 4.481 18 H 0.106 0.894 19 C -0.144 4.144 20 N -0.438 5.438 21 Si 0.733 3.267 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.192 1.192 25 C -0.084 4.084 26 C -0.010 4.010 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.774 3.867 -3.766 13.868 hybrid contribution -0.111 -0.531 -0.036 0.544 sum -12.885 3.336 -3.802 13.843 Atomic orbital electron populations 1.21500 0.78361 1.03092 1.01169 1.46897 1.06736 1.05186 1.79405 1.22627 0.99410 0.85002 1.02623 1.15875 0.80910 0.83315 0.78037 1.90858 1.67784 1.33431 1.54389 1.47294 1.09601 1.32229 1.48164 1.21618 0.91187 0.89755 0.96039 1.22451 0.97481 0.94003 0.94734 1.61954 1.21837 1.17608 1.23082 1.20636 0.93086 0.96046 0.90185 1.19550 0.99785 1.02872 0.96423 1.20382 0.97603 0.97201 0.96010 1.20329 0.98642 1.05059 1.01597 1.20706 0.96168 0.99573 0.96510 1.21393 1.01443 0.97721 0.96586 1.17371 0.89207 0.88734 0.91695 1.19630 0.91853 1.33646 1.03000 0.89408 1.25908 0.96551 0.94186 0.97800 1.69780 1.01637 1.38322 1.34096 0.86385 0.77562 0.80089 0.82690 1.19054 1.20726 1.19181 1.22443 0.93301 0.97098 0.95532 1.22131 0.97855 0.90730 0.90295 0.93444 0.91488 0.90487 0.93094 0.91317 0.87881 0.90865 0.89472 0.89515 0.95165 0.90370 0.96584 0.89995 0.89816 0.89696 0.86606 0.91215 0.95542 0.88793 0.90260 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.57 59.85 0.63 1.60 16 2 N -0.64 -7.59 3.11 -195.33 -0.61 -8.20 16 3 C 0.05 0.41 9.70 59.85 0.58 0.99 16 4 C 0.72 10.84 7.66 -86.91 -0.67 10.17 16 5 O -0.59 -10.85 15.68 5.29 0.08 -10.76 16 6 N -0.63 -9.05 2.92 -181.13 -0.53 -9.58 16 7 C 0.14 1.99 6.61 -3.60 -0.02 1.97 16 8 C 0.04 0.65 5.60 -3.70 -0.02 0.63 16 9 N -0.52 -8.95 4.21 -235.76 -0.99 -9.94 16 10 C 0.13 2.44 4.34 -4.97 -0.02 2.41 16 11 C -0.18 -4.08 4.81 -103.91 -0.50 -4.58 16 12 C -0.09 -1.96 8.69 -39.66 -0.34 -2.30 16 13 C -0.24 -5.08 10.05 -39.29 -0.39 -5.48 16 14 C -0.11 -2.53 10.02 -39.66 -0.40 -2.92 16 15 C -0.15 -3.81 8.63 -38.87 -0.34 -4.14 16 16 C 0.13 3.29 5.51 -106.82 -0.59 2.71 16 17 C -0.45 -11.18 8.03 -37.74 -0.30 -11.48 16 18 H 0.09 2.12 7.04 -52.48 -0.37 1.75 16 19 C 0.07 1.72 5.31 -17.34 -0.09 1.63 16 20 N -0.81 -20.66 10.94 55.55 0.61 -20.05 16 21 Si 0.91 18.55 29.56 -169.99 -5.03 13.53 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.05 0.69 5.46 -3.70 -0.02 0.67 16 26 C 0.11 1.44 4.50 -3.60 -0.02 1.42 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.47 8.07 -51.92 -0.42 0.05 16 29 H 0.08 0.85 7.28 -51.93 -0.38 0.47 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.10 0.95 2.98 -55.73 -0.17 0.78 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.28 7.22 -51.93 -0.37 0.90 16 35 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.59 7.24 -51.93 -0.38 1.21 16 38 H 0.02 0.29 7.91 -51.93 -0.41 -0.12 16 39 H 0.08 1.54 8.02 -52.49 -0.42 1.12 16 40 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.12 3.04 6.44 -52.49 -0.34 2.70 16 43 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.53 6.54 -51.93 -0.34 1.19 16 46 H 0.08 1.02 7.59 -51.93 -0.39 0.62 16 47 H 0.09 0.95 5.63 -51.93 -0.29 0.66 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -29.19 366.28 -10.66 -39.85 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.20 Total: 6.35 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.51 Total: -6.71 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -1.52 Total: -47.77 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.19 -10.66 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.577 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds