Wall clock time and date at job start Tue Mar 31 2020 11:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00208 * 2 1 4 4 C 1.34778 * 119.99835 * 180.02562 * 2 1 3 5 5 O 1.21590 * 120.00127 * 20.67779 * 4 2 1 6 6 N 1.34781 * 119.99783 * 200.68288 * 4 2 1 7 7 C 1.47081 * 120.87761 * 205.58291 * 6 4 2 8 8 C 1.53245 * 108.51547 * 231.20444 * 7 6 4 9 9 N 1.46893 * 109.34070 * 306.16866 * 8 7 6 10 10 C 1.46907 * 110.99755 * 187.25572 * 9 8 7 11 11 C 1.50703 * 109.46727 * 164.34345 * 10 9 8 12 12 C 1.37633 * 120.12805 * 101.14110 * 11 10 9 13 13 C 1.38619 * 120.24773 * 180.24990 * 12 11 10 14 14 C 1.38652 * 120.50147 * 0.04448 * 13 12 11 15 15 C 1.37603 * 120.24881 * 359.95300 * 14 13 12 16 16 C 1.40702 * 120.12588 * 281.41407 * 11 10 9 17 17 C 1.41398 * 120.24495 * 359.74979 * 16 11 10 18 18 H 1.08008 * 119.99671 * 33.62317 * 17 16 11 19 19 C 1.39944 * 120.00262 * 213.62897 * 17 16 11 20 20 N 1.30827 * 119.99806 * 6.05043 * 19 17 16 21 21 Si 1.86798 * 120.00096 * 186.05764 * 19 17 16 22 22 H 1.48502 * 109.47257 * 59.99394 * 21 19 17 23 23 H 1.48499 * 109.47159 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47099 * 299.99323 * 21 19 17 25 25 C 1.46898 * 111.26845 * 63.11104 * 9 8 7 26 26 C 1.47077 * 120.88213 * 25.60167 * 6 4 2 27 27 H 1.08994 * 109.47229 * 270.00234 * 1 2 3 28 28 H 1.09009 * 109.46873 * 30.00059 * 1 2 3 29 29 H 1.09001 * 109.47525 * 149.99849 * 1 2 3 30 30 H 1.09005 * 109.46693 * 267.28857 * 3 2 1 31 31 H 1.08995 * 109.46743 * 27.28763 * 3 2 1 32 32 H 1.09002 * 109.47032 * 147.28945 * 3 2 1 33 33 H 1.09000 * 109.62991 * 111.49818 * 7 6 4 34 34 H 1.08999 * 109.62845 * 350.91411 * 7 6 4 35 35 H 1.09000 * 109.48787 * 186.20930 * 8 7 6 36 36 H 1.08999 * 109.51529 * 66.14964 * 8 7 6 37 37 H 1.08994 * 109.47126 * 44.34040 * 10 9 8 38 38 H 1.08995 * 109.46898 * 284.33692 * 10 9 8 39 39 H 1.07996 * 119.87843 * 0.27620 * 12 11 10 40 40 H 1.07997 * 119.74955 * 180.02562 * 13 12 11 41 41 H 1.08001 * 119.87818 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.12679 * 180.02562 * 15 14 13 43 43 H 0.96997 * 119.99729 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.49481 * 56.85226 * 25 9 8 45 45 H 1.09003 * 109.49451 * 176.93655 * 25 9 8 46 46 H 1.08997 * 109.62708 * 248.50510 * 26 6 4 47 47 H 1.09003 * 109.62671 * 8.89462 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5896 -2.1861 -0.3728 6 7 3.4215 -1.2050 0.4117 7 6 4.3384 -2.2498 -0.0689 8 6 5.0131 -2.9005 1.1435 9 7 5.6370 -1.8589 1.9702 10 6 6.4394 -2.4526 3.0480 11 6 7.3565 -1.4059 3.6264 12 6 7.0373 -0.7878 4.8140 13 6 7.8764 0.1790 5.3456 14 6 9.0445 0.5353 4.6890 15 6 9.3836 -0.0696 3.5005 16 6 8.5395 -1.0527 2.9515 17 6 8.8775 -1.6806 1.7306 18 1 8.0994 -1.9819 1.0448 19 6 10.2202 -1.9119 1.4108 20 7 11.1552 -1.6564 2.2894 21 14 10.6773 -2.5851 -0.2706 22 1 10.2146 -1.6449 -1.3228 23 1 12.1517 -2.7387 -0.3582 24 1 10.0290 -3.9065 -0.4677 25 6 4.6316 -0.9342 2.5107 26 6 3.9413 -0.2028 1.3544 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 2.4213 1.5590 -1.0266 31 1 1.5883 2.0400 0.4711 32 1 3.1280 1.1510 0.5554 33 1 5.0956 -1.8041 -0.7139 34 1 3.7776 -3.0022 -0.6235 35 1 5.7762 -3.6003 0.8029 36 1 4.2671 -3.4342 1.7324 37 1 7.0328 -3.2749 2.6484 38 1 5.7780 -2.8277 3.8290 39 1 6.1298 -1.0573 5.3338 40 1 7.6183 0.6585 6.2782 41 1 9.6907 1.2901 5.1121 42 1 10.2941 0.2092 2.9909 43 1 12.0858 -1.8163 2.0677 44 1 3.8907 -1.4949 3.0805 45 1 5.1182 -0.2077 3.1616 46 1 4.6603 0.4396 0.8461 47 1 3.1184 0.4003 1.7381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:39 Heat of formation + Delta-G solvation = 23.518020 kcal Electronic energy + Delta-G solvation = -27500.658364 eV Core-core repulsion = 23877.051213 eV Total energy + Delta-G solvation = -3623.607151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.67457 -39.90216 -38.64620 -36.73874 -35.64254 -35.32848 -32.43359 -32.02634 -31.18283 -29.14201 -28.80537 -27.23051 -26.42979 -24.86914 -24.59138 -22.70765 -21.96997 -21.20465 -20.45863 -18.90679 -18.30246 -17.58029 -17.14353 -17.01102 -16.38021 -16.22031 -16.02637 -15.78215 -15.46852 -15.25783 -15.05098 -14.88290 -14.73739 -14.28945 -13.91199 -13.86327 -13.44881 -13.38001 -13.20340 -13.05654 -12.88943 -12.74501 -12.69637 -12.52865 -12.36906 -12.28221 -12.10900 -11.98999 -11.76808 -11.28051 -11.13203 -11.08383 -10.92710 -9.89466 -9.44208 -9.19546 -9.05769 -8.96211 -8.43339 -6.19215 1.06709 1.18951 1.44105 1.53014 1.58689 1.60348 1.84096 2.29698 2.73639 2.89733 3.12685 3.83936 3.94044 3.99548 4.11919 4.22355 4.25369 4.30367 4.41451 4.42714 4.50798 4.52138 4.56528 4.63763 4.72768 4.76636 4.78319 4.80126 4.86804 4.92049 4.94017 4.98421 5.05765 5.18431 5.34310 5.38848 5.46765 5.61104 5.68811 5.84168 5.87713 6.06749 6.20034 6.28560 6.33002 6.36813 6.56059 6.79603 6.87939 7.15538 7.21377 7.38699 8.53408 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.004059 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.925317 B = 6896.247918 C = 8023.676217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.641 5.641 3 C 0.044 3.956 4 C 0.708 3.292 5 O -0.629 6.629 6 N -0.635 5.635 7 C 0.142 3.858 8 C 0.049 3.951 9 N -0.531 5.531 10 C 0.135 3.865 11 C -0.182 4.182 12 C -0.095 4.095 13 C -0.232 4.232 14 C -0.119 4.119 15 C -0.181 4.181 16 C 0.105 3.895 17 C -0.471 4.471 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.847 5.847 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.048 3.952 26 C 0.120 3.880 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.279 0.721 44 H 0.027 0.973 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 5.298 -3.065 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.379 5.379 3 C -0.098 4.098 4 C 0.411 3.589 5 O -0.509 6.509 6 N -0.373 5.373 7 C 0.019 3.981 8 C -0.080 4.080 9 N -0.256 5.256 10 C 0.008 3.992 11 C -0.184 4.184 12 C -0.114 4.114 13 C -0.251 4.251 14 C -0.137 4.137 15 C -0.200 4.200 16 C 0.102 3.898 17 C -0.501 4.501 18 H 0.106 0.894 19 C -0.182 4.182 20 N -0.476 5.476 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.081 4.081 26 C -0.002 4.002 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.588 5.008 -3.554 15.828 hybrid contribution 0.346 -0.796 0.016 0.868 sum -14.242 4.213 -3.539 15.268 Atomic orbital electron populations 1.21659 0.77025 1.03581 1.02098 1.47062 1.07697 1.05046 1.78111 1.22761 0.99559 0.84230 1.03209 1.16111 0.80959 0.83820 0.77963 1.90829 1.68666 1.35206 1.56213 1.47300 1.09420 1.32327 1.48288 1.21509 0.91160 0.89954 0.95525 1.22407 0.97273 0.93639 0.94680 1.61863 1.22851 1.18238 1.22623 1.20462 0.92984 0.94771 0.90965 1.19855 0.99128 1.02837 0.96596 1.20698 0.98475 0.96636 0.95560 1.20703 0.97666 1.04525 1.02216 1.20946 0.97113 0.99775 0.95903 1.21347 1.01402 0.99255 0.98029 1.17672 0.90462 0.89207 0.92452 1.19781 0.92328 1.34506 1.03534 0.89447 1.26634 0.96314 0.94290 1.00916 1.69873 1.01925 1.39964 1.35830 0.85412 0.77243 0.79510 0.78472 1.18749 1.20417 1.18607 1.22460 0.92746 0.96521 0.96394 1.22202 0.98578 0.90181 0.89211 0.92264 0.88457 0.92552 0.92729 0.88337 0.88247 0.90748 0.89805 0.89540 0.95445 0.91988 0.95448 0.87170 0.86865 0.87991 0.88928 0.91085 0.95500 0.89630 0.90020 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.57 127.77 1.35 2.99 16 2 N -0.64 -13.59 3.11 -890.17 -2.76 -16.36 16 3 C 0.04 0.63 9.70 127.77 1.24 1.87 16 4 C 0.71 20.56 7.66 179.05 1.37 21.93 16 5 O -0.63 -23.06 15.68 -4.00 -0.06 -23.13 16 6 N -0.64 -17.26 2.92 -845.24 -2.46 -19.72 16 7 C 0.14 4.04 6.61 86.35 0.57 4.61 16 8 C 0.05 1.47 5.60 86.39 0.48 1.96 16 9 N -0.53 -17.85 4.21 -899.81 -3.79 -21.64 16 10 C 0.13 5.11 4.34 85.56 0.37 5.49 16 11 C -0.18 -7.97 4.81 -19.40 -0.09 -8.06 16 12 C -0.10 -3.80 8.69 22.22 0.19 -3.61 16 13 C -0.23 -9.44 10.05 22.46 0.23 -9.21 16 14 C -0.12 -5.35 10.02 22.22 0.22 -5.13 16 15 C -0.18 -9.26 8.63 22.73 0.20 -9.06 16 16 C 0.10 5.27 5.51 -21.29 -0.12 5.16 16 17 C -0.47 -23.86 8.03 23.46 0.19 -23.68 16 18 H 0.09 4.29 7.04 -2.91 -0.02 4.27 16 19 C 0.03 1.49 5.31 85.26 0.45 1.94 16 20 N -0.85 -44.57 10.94 21.83 0.24 -44.33 16 21 Si 0.97 38.63 29.56 68.60 2.03 40.66 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 C 0.05 1.37 5.46 86.38 0.47 1.84 16 26 C 0.12 2.83 4.50 86.35 0.39 3.21 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.01 8.07 -2.38 -0.02 1.00 16 29 H 0.06 1.19 7.28 -2.39 -0.02 1.17 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.87 8.05 -2.39 -0.02 0.85 16 32 H 0.10 1.52 2.98 -5.96 -0.02 1.50 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.45 7.22 -2.39 -0.02 2.44 16 35 H 0.09 2.59 7.93 -2.39 -0.02 2.57 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 2.54 7.24 -2.39 -0.02 2.52 16 38 H 0.03 0.97 7.91 -2.39 -0.02 0.95 16 39 H 0.11 3.78 8.02 -2.91 -0.02 3.75 16 40 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.09 5.09 6.44 -2.91 -0.02 5.07 16 43 H 0.28 13.63 8.30 -92.71 -0.77 12.86 16 44 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.09 2.62 6.54 -2.39 -0.02 2.60 16 46 H 0.08 1.92 7.59 -2.39 -0.02 1.91 16 47 H 0.12 2.11 5.63 -2.39 -0.01 2.10 16 Total: -1.00 -64.17 366.28 1.66 -62.51 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.95 Total: 29.76 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 7.51 Total: -7.75 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -8.78 Total: -102.05 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -64.17 1.66 -62.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.031 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds