Wall clock time and date at job start Tue Mar 31 2020 11:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 120.00019 * 2 1 4 4 O 1.21582 * 119.99745 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99846 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99948 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.53605 * 325.10139 * 6 5 3 8 8 C 1.53125 * 109.50308 * 85.19680 * 6 5 3 9 9 C 1.53119 * 109.15682 * 177.59617 * 8 6 5 10 10 C 1.53039 * 109.27974 * 302.34375 * 9 8 6 11 11 N 1.46844 * 109.51982 * 59.18577 * 10 9 8 12 12 C 1.46910 * 110.99903 * 174.16064 * 11 10 9 13 13 C 1.50703 * 109.46830 * 287.77712 * 12 11 10 14 14 C 1.37635 * 120.13038 * 106.88065 * 13 12 11 15 15 C 1.38606 * 120.25022 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50015 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.25152 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12267 * 286.90290 * 13 12 11 19 19 C 1.41393 * 120.24552 * 359.97438 * 18 13 12 20 20 H 1.07997 * 120.00316 * 25.38903 * 19 18 13 21 21 C 1.39953 * 119.99830 * 205.38901 * 19 18 13 22 22 N 1.30822 * 119.99991 * 15.96582 * 21 19 18 23 23 Si 1.86797 * 119.99671 * 195.97592 * 21 19 18 24 24 H 1.48500 * 109.47613 * 89.99690 * 23 21 19 25 25 H 1.48502 * 109.46915 * 209.99999 * 23 21 19 26 26 H 1.48506 * 109.46961 * 329.99399 * 23 21 19 27 27 C 1.46849 * 111.19931 * 298.25147 * 11 10 9 28 28 H 1.09007 * 109.46919 * 60.00568 * 1 2 3 29 29 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47238 * 300.00335 * 1 2 3 31 31 H 0.97007 * 119.99749 * 179.97438 * 2 1 3 32 32 H 0.97007 * 119.99922 * 359.97438 * 5 3 2 33 33 H 1.08996 * 109.52020 * 297.50037 * 8 6 5 34 34 H 1.09000 * 109.52027 * 57.69089 * 8 6 5 35 35 H 1.08996 * 109.50785 * 62.28857 * 9 8 6 36 36 H 1.09004 * 109.49665 * 182.40491 * 9 8 6 37 37 H 1.08998 * 109.46196 * 299.16483 * 10 9 8 38 38 H 1.08999 * 109.46098 * 179.19645 * 10 9 8 39 39 H 1.08996 * 109.46925 * 167.77242 * 12 11 10 40 40 H 1.09006 * 109.46765 * 47.77347 * 12 11 10 41 41 H 1.07999 * 119.87619 * 0.02562 * 14 13 12 42 42 H 1.07998 * 119.75243 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.87648 * 179.72512 * 16 15 14 44 44 H 1.08001 * 120.13295 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99551 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.46365 * 181.76208 * 27 11 10 47 47 H 1.09001 * 109.46234 * 301.74350 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4359 0.0000 7 1 3.6720 3.1724 -0.5885 8 6 4.3696 2.9400 1.4380 9 6 5.1876 4.2344 1.4337 10 6 6.5475 3.9706 0.7832 11 7 6.3495 3.4911 -0.5906 12 6 7.6333 3.3592 -1.2923 13 6 8.1762 4.7291 -1.6081 14 6 9.2488 5.2265 -0.9035 15 6 9.7498 6.4864 -1.1916 16 6 9.1779 7.2597 -2.1902 17 6 8.1042 6.7832 -2.9068 18 6 7.5882 5.5047 -2.6241 19 6 6.4859 5.0041 -3.3546 20 1 5.8388 4.2604 -2.9137 21 6 6.2335 5.4724 -4.6491 22 7 7.1627 6.1211 -5.3028 23 14 4.5698 5.1714 -5.4433 24 1 3.6579 6.2994 -5.1250 25 1 4.7353 5.0690 -6.9155 26 1 3.9935 3.9063 -4.9208 27 6 5.6071 2.2242 -0.6091 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.9717 0.3271 0.0013 33 1 3.3839 3.1334 1.8611 34 1 4.8824 2.1869 2.0362 35 1 4.6557 4.9992 0.8679 36 1 5.3344 4.5753 2.4586 37 1 7.0845 3.2157 1.3575 38 1 7.1268 4.8936 0.7657 39 1 7.4856 2.8044 -2.2188 40 1 8.3409 2.8253 -0.6579 41 1 9.7019 4.6329 -0.1233 42 1 10.5920 6.8686 -0.6339 43 1 9.5735 8.2419 -2.4033 44 1 7.6599 7.3874 -3.6840 45 1 6.9878 6.4453 -6.2001 46 1 5.5036 1.8789 -1.6377 47 1 6.1485 1.4776 -0.0281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235528112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:52 Heat of formation + Delta-G solvation = -10.274775 kcal Electronic energy + Delta-G solvation = -27150.299796 eV Core-core repulsion = 23525.227279 eV Total energy + Delta-G solvation = -3625.072517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15211 -38.68688 -37.30474 -34.85681 -34.42923 -33.53524 -32.64296 -30.16689 -29.53351 -29.12797 -26.40790 -25.85398 -24.75115 -22.62722 -22.41557 -20.87041 -20.79654 -19.76218 -19.35296 -18.46924 -17.07400 -16.54767 -15.51918 -15.42571 -15.15988 -14.77372 -14.60058 -14.39112 -14.25129 -13.87091 -13.73930 -13.32350 -13.19229 -13.08155 -12.76451 -12.51939 -12.42326 -12.23488 -11.60607 -11.47318 -11.23085 -11.10114 -11.00041 -10.86758 -10.61289 -10.54671 -10.50703 -10.31521 -10.21278 -10.05887 -9.44471 -9.33569 -9.23512 -9.08152 -8.82871 -7.67069 -7.28906 -7.23119 -6.65199 -4.22568 2.64171 2.86430 3.04131 3.15566 3.20978 3.22591 3.33989 4.03334 4.14072 4.58122 4.77131 4.95488 5.03435 5.09257 5.28644 5.36434 5.44723 5.53011 5.61438 5.80106 5.82363 5.85221 5.89293 6.03897 6.09880 6.16061 6.24801 6.29664 6.31488 6.35890 6.47913 6.52282 6.55469 6.61297 6.63816 6.88605 6.89917 7.19605 7.35981 7.46284 7.66163 7.67013 7.76568 7.96994 8.01932 8.17135 8.24522 8.41623 8.60431 8.78672 9.04540 9.11117 10.28974 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.004323 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.061342 B = 6475.770730 C = 8198.487551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.756 5.756 3 C 0.702 3.298 4 O -0.585 6.585 5 N -0.740 5.740 6 C 0.165 3.835 7 H 0.100 0.900 8 C -0.125 4.125 9 C -0.114 4.114 10 C 0.059 3.941 11 N -0.516 5.516 12 C 0.131 3.869 13 C -0.195 4.195 14 C -0.086 4.086 15 C -0.248 4.248 16 C -0.107 4.107 17 C -0.164 4.164 18 C 0.132 3.868 19 C -0.442 4.442 20 H 0.093 0.907 21 C 0.073 3.927 22 N -0.798 5.798 23 Si 0.902 3.098 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.262 1.262 27 C 0.053 3.947 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.395 0.605 32 H 0.392 0.608 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.016 0.984 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.078 0.922 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -12.453 9.267 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.411 5.411 3 C 0.402 3.598 4 O -0.463 6.463 5 N -0.394 5.394 6 C 0.060 3.940 7 H 0.118 0.882 8 C -0.164 4.164 9 C -0.152 4.152 10 C -0.069 4.069 11 N -0.240 5.240 12 C 0.005 3.995 13 C -0.197 4.197 14 C -0.105 4.105 15 C -0.267 4.267 16 C -0.125 4.125 17 C -0.184 4.184 18 C 0.130 3.870 19 C -0.471 4.471 20 H 0.111 0.889 21 C -0.144 4.144 22 N -0.424 5.424 23 Si 0.727 3.273 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.186 1.186 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.034 0.966 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.726 -11.020 8.765 16.061 hybrid contribution 0.291 -1.486 -0.050 1.515 sum -7.434 -12.506 8.716 16.960 Atomic orbital electron populations 1.21357 0.78376 1.01660 1.02282 1.44940 1.07670 1.07174 1.81363 1.15968 0.81897 0.84185 0.77783 1.90946 1.67782 1.30206 1.57326 1.45182 1.04497 1.09814 1.79900 1.20875 0.92021 0.84447 0.96678 0.88194 1.21949 1.00401 0.97632 0.96446 1.21543 0.96071 0.97434 1.00153 1.22061 0.96348 1.00376 0.88096 1.61813 1.20889 1.26310 1.14984 1.20587 0.86777 0.95661 0.96503 1.19413 0.99851 0.96091 1.04345 1.20347 0.96817 0.95267 0.98108 1.20268 1.04678 0.97328 1.04458 1.20668 0.97445 0.97722 0.96698 1.21388 0.98581 0.96757 1.01657 1.17352 0.90527 0.89903 0.89267 1.19790 1.09576 1.20394 0.97351 0.88936 1.25965 0.97445 0.93246 0.97703 1.69840 1.32402 1.28729 1.11429 0.86404 0.82847 0.80155 0.77852 1.19380 1.20699 1.18598 1.22217 0.92898 0.91785 1.00706 0.92403 0.90915 0.92506 0.77192 0.77498 0.91726 0.92724 0.90563 0.91817 0.96108 0.89808 0.90891 0.96554 0.90069 0.89956 0.89839 0.86526 0.91171 0.90320 0.95578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 10.70 59.85 0.64 1.53 16 2 N -0.76 -7.11 5.72 -72.07 -0.41 -7.52 16 3 C 0.70 9.62 8.53 -86.91 -0.74 8.88 16 4 O -0.59 -10.80 16.01 5.29 0.08 -10.72 16 5 N -0.74 -8.80 5.08 -58.59 -0.30 -9.10 16 6 C 0.16 2.40 2.62 -67.85 -0.18 2.22 16 7 H 0.10 1.82 7.58 -51.93 -0.39 1.43 16 8 C -0.13 -1.71 5.58 -26.60 -0.15 -1.86 16 9 C -0.11 -1.65 6.09 -26.65 -0.16 -1.82 16 10 C 0.06 0.96 5.30 -3.83 -0.02 0.94 16 11 N -0.52 -9.17 3.79 -236.10 -0.89 -10.07 16 12 C 0.13 2.55 4.30 -4.97 -0.02 2.53 16 13 C -0.19 -4.48 4.70 -103.91 -0.49 -4.97 16 14 C -0.09 -1.90 9.13 -39.67 -0.36 -2.27 16 15 C -0.25 -5.59 10.05 -39.29 -0.39 -5.99 16 16 C -0.11 -2.55 10.02 -39.66 -0.40 -2.94 16 17 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 18 C 0.13 3.42 5.57 -106.82 -0.59 2.83 16 19 C -0.44 -11.38 8.24 -37.74 -0.31 -11.69 16 20 H 0.09 2.34 6.55 -52.49 -0.34 1.99 16 21 C 0.07 1.84 5.17 -17.34 -0.09 1.75 16 22 N -0.80 -20.70 10.91 55.55 0.61 -20.09 16 23 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 27 C 0.05 0.78 4.91 -3.83 -0.02 0.76 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.40 2.37 8.84 -40.82 -0.36 2.01 16 32 H 0.39 3.36 8.62 -40.82 -0.35 3.01 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 1.52 6.94 -51.93 -0.36 1.16 16 39 H 0.07 1.48 7.44 -51.93 -0.39 1.09 16 40 H 0.02 0.29 7.84 -51.93 -0.41 -0.11 16 41 H 0.08 1.59 7.98 -52.49 -0.42 1.17 16 42 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 44 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 45 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 46 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.68 375.62 -11.45 -42.14 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.54 Total: 10.06 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -3.63 Total: -14.74 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -1.00 Total: -46.78 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.68 -11.45 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235528112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.860 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds