Wall clock time and date at job start Tue Mar 31 2020 11:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 120.00019 * 2 1 4 4 O 1.21582 * 119.99745 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99846 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99948 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.53605 * 325.10139 * 6 5 3 8 8 C 1.53125 * 109.50308 * 85.19680 * 6 5 3 9 9 C 1.53119 * 109.15682 * 177.59617 * 8 6 5 10 10 C 1.53039 * 109.27974 * 302.34375 * 9 8 6 11 11 N 1.46844 * 109.51982 * 59.18577 * 10 9 8 12 12 C 1.46910 * 110.99903 * 174.16064 * 11 10 9 13 13 C 1.50703 * 109.46830 * 287.77712 * 12 11 10 14 14 C 1.37635 * 120.13038 * 106.88065 * 13 12 11 15 15 C 1.38606 * 120.25022 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50015 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.25152 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12267 * 286.90290 * 13 12 11 19 19 C 1.41393 * 120.24552 * 359.97438 * 18 13 12 20 20 H 1.07997 * 120.00316 * 25.38903 * 19 18 13 21 21 C 1.39953 * 119.99830 * 205.38901 * 19 18 13 22 22 N 1.30822 * 119.99991 * 15.96582 * 21 19 18 23 23 Si 1.86797 * 119.99671 * 195.97592 * 21 19 18 24 24 H 1.48500 * 109.47613 * 89.99690 * 23 21 19 25 25 H 1.48502 * 109.46915 * 209.99999 * 23 21 19 26 26 H 1.48506 * 109.46961 * 329.99399 * 23 21 19 27 27 C 1.46849 * 111.19931 * 298.25147 * 11 10 9 28 28 H 1.09007 * 109.46919 * 60.00568 * 1 2 3 29 29 H 1.09004 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47238 * 300.00335 * 1 2 3 31 31 H 0.97007 * 119.99749 * 179.97438 * 2 1 3 32 32 H 0.97007 * 119.99922 * 359.97438 * 5 3 2 33 33 H 1.08996 * 109.52020 * 297.50037 * 8 6 5 34 34 H 1.09000 * 109.52027 * 57.69089 * 8 6 5 35 35 H 1.08996 * 109.50785 * 62.28857 * 9 8 6 36 36 H 1.09004 * 109.49665 * 182.40491 * 9 8 6 37 37 H 1.08998 * 109.46196 * 299.16483 * 10 9 8 38 38 H 1.08999 * 109.46098 * 179.19645 * 10 9 8 39 39 H 1.08996 * 109.46925 * 167.77242 * 12 11 10 40 40 H 1.09006 * 109.46765 * 47.77347 * 12 11 10 41 41 H 1.07999 * 119.87619 * 0.02562 * 14 13 12 42 42 H 1.07998 * 119.75243 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.87648 * 179.72512 * 16 15 14 44 44 H 1.08001 * 120.13295 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99551 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.46365 * 181.76208 * 27 11 10 47 47 H 1.09001 * 109.46234 * 301.74350 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2192 2.4359 0.0000 7 1 3.6720 3.1724 -0.5885 8 6 4.3696 2.9400 1.4380 9 6 5.1876 4.2344 1.4337 10 6 6.5475 3.9706 0.7832 11 7 6.3495 3.4911 -0.5906 12 6 7.6333 3.3592 -1.2923 13 6 8.1762 4.7291 -1.6081 14 6 9.2488 5.2265 -0.9035 15 6 9.7498 6.4864 -1.1916 16 6 9.1779 7.2597 -2.1902 17 6 8.1042 6.7832 -2.9068 18 6 7.5882 5.5047 -2.6241 19 6 6.4859 5.0041 -3.3546 20 1 5.8388 4.2604 -2.9137 21 6 6.2335 5.4724 -4.6491 22 7 7.1627 6.1211 -5.3028 23 14 4.5698 5.1714 -5.4433 24 1 3.6579 6.2994 -5.1250 25 1 4.7353 5.0690 -6.9155 26 1 3.9935 3.9063 -4.9208 27 6 5.6071 2.2242 -0.6091 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8401 0.0004 32 1 3.9717 0.3271 0.0013 33 1 3.3839 3.1334 1.8611 34 1 4.8824 2.1869 2.0362 35 1 4.6557 4.9992 0.8679 36 1 5.3344 4.5753 2.4586 37 1 7.0845 3.2157 1.3575 38 1 7.1268 4.8936 0.7657 39 1 7.4856 2.8044 -2.2188 40 1 8.3409 2.8253 -0.6579 41 1 9.7019 4.6329 -0.1233 42 1 10.5920 6.8686 -0.6339 43 1 9.5735 8.2419 -2.4033 44 1 7.6599 7.3874 -3.6840 45 1 6.9878 6.4453 -6.2001 46 1 5.5036 1.8789 -1.6377 47 1 6.1485 1.4776 -0.0281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235528112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:51 Heat of formation + Delta-G solvation = -30.517521 kcal Electronic energy + Delta-G solvation = -27151.177587 eV Core-core repulsion = 23525.227279 eV Total energy + Delta-G solvation = -3625.950308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25207 -40.07994 -38.92436 -35.99373 -35.51935 -35.41348 -33.92717 -31.73501 -31.26442 -30.47713 -27.55073 -27.21249 -26.44195 -23.91309 -23.67936 -22.71707 -21.89936 -21.14433 -20.86037 -19.48319 -18.95598 -17.66943 -17.11756 -16.58045 -16.42303 -16.32885 -15.95536 -15.71279 -15.53138 -15.26093 -15.08571 -14.69673 -14.52092 -14.43174 -14.30815 -13.84919 -13.48286 -13.31693 -13.26167 -13.01589 -12.90925 -12.74182 -12.47860 -12.34117 -12.30272 -12.07915 -11.79965 -11.75739 -11.51937 -11.32643 -11.25506 -11.02444 -10.96473 -10.36172 -9.77316 -9.16779 -9.13499 -8.93773 -8.53364 -6.17418 1.03637 1.18457 1.37473 1.47893 1.55431 1.72738 2.15913 2.22936 2.83493 3.13500 3.46942 3.82115 3.87819 3.98095 4.10251 4.22439 4.36261 4.41542 4.46802 4.52449 4.60710 4.66111 4.66695 4.69225 4.73815 4.81976 4.87867 4.95667 4.99216 5.08388 5.09727 5.17811 5.28527 5.30594 5.41672 5.46754 5.51311 5.54094 5.61907 5.86749 6.03248 6.09544 6.24447 6.30963 6.39874 6.43796 6.55695 6.87093 7.13133 7.13994 7.21323 7.61514 8.42743 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.004323 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.061342 B = 6475.770730 C = 8198.487551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.738 5.738 3 C 0.694 3.306 4 O -0.640 6.640 5 N -0.726 5.726 6 C 0.173 3.827 7 H 0.054 0.946 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.139 3.861 13 C -0.193 4.193 14 C -0.090 4.090 15 C -0.246 4.246 16 C -0.117 4.117 17 C -0.198 4.198 18 C 0.103 3.897 19 C -0.464 4.464 20 H 0.089 0.911 21 C 0.036 3.964 22 N -0.830 5.830 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.263 1.263 27 C 0.061 3.939 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.416 0.584 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.282 0.718 46 H 0.069 0.931 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -15.178 11.206 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.394 5.394 3 C 0.394 3.606 4 O -0.521 6.521 5 N -0.381 5.381 6 C 0.066 3.934 7 H 0.072 0.928 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.064 4.064 11 N -0.265 5.265 12 C 0.013 3.987 13 C -0.195 4.195 14 C -0.108 4.108 15 C -0.265 4.265 16 C -0.135 4.135 17 C -0.217 4.217 18 C 0.100 3.900 19 C -0.494 4.494 20 H 0.107 0.893 21 C -0.178 4.178 22 N -0.458 5.458 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.068 4.068 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.252 0.748 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.264 -13.819 10.711 18.933 hybrid contribution 0.220 -0.647 -0.549 0.877 sum -7.043 -14.466 10.162 19.030 Atomic orbital electron populations 1.21519 0.77460 1.04063 1.00989 1.44822 1.08223 1.06700 1.79698 1.16255 0.82238 0.84553 0.77581 1.90915 1.68908 1.32528 1.59750 1.44883 1.04046 1.09832 1.79365 1.20570 0.91475 0.84655 0.96665 0.92780 1.21838 0.99857 0.97690 0.95878 1.21502 0.95200 0.97252 1.00809 1.22012 0.96900 0.99903 0.87538 1.61613 1.20302 1.28459 1.16157 1.20429 0.88070 0.93520 0.96717 1.19842 0.99526 0.97271 1.02847 1.20717 0.96258 0.95429 0.98430 1.20669 1.04894 0.97343 1.03587 1.20914 0.96941 0.98781 0.96872 1.21360 1.00341 0.97379 1.02637 1.17687 0.91278 0.90361 0.90665 1.19902 1.10269 1.21199 0.98031 0.89295 1.26604 1.00124 0.93026 0.98015 1.69900 1.33900 1.30023 1.11940 0.85494 0.78885 0.79539 0.77522 1.19836 1.19424 1.18672 1.22144 0.92697 0.91115 1.00822 0.94089 0.86599 0.93513 0.74815 0.75121 0.92915 0.90028 0.93539 0.89493 0.93638 0.92123 0.92223 0.94161 0.86731 0.87041 0.88241 0.88824 0.90772 0.91259 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 10.70 127.77 1.37 2.90 16 2 N -0.74 -12.36 5.72 -500.19 -2.86 -15.22 16 3 C 0.69 18.44 8.53 179.05 1.53 19.97 16 4 O -0.64 -24.14 16.01 -3.97 -0.06 -24.20 16 5 N -0.73 -16.05 5.08 -457.55 -2.33 -18.38 16 6 C 0.17 4.89 2.62 45.05 0.12 5.01 16 7 H 0.05 2.06 7.58 -2.38 -0.02 2.04 16 8 C -0.11 -2.92 5.58 30.68 0.17 -2.75 16 9 C -0.11 -3.06 6.09 30.65 0.19 -2.88 16 10 C 0.06 1.95 5.30 86.33 0.46 2.41 16 11 N -0.54 -18.72 3.79 -900.89 -3.41 -22.13 16 12 C 0.14 5.24 4.30 85.56 0.37 5.61 16 13 C -0.19 -8.78 4.70 -19.40 -0.09 -8.87 16 14 C -0.09 -3.76 9.13 22.22 0.20 -3.56 16 15 C -0.25 -10.65 10.05 22.46 0.23 -10.42 16 16 C -0.12 -5.59 10.02 22.22 0.22 -5.36 16 17 C -0.20 -10.70 8.69 22.73 0.20 -10.50 16 18 C 0.10 5.46 5.57 -21.29 -0.12 5.34 16 19 C -0.46 -24.83 8.24 23.46 0.19 -24.64 16 20 H 0.09 4.67 6.55 -2.91 -0.02 4.65 16 21 C 0.04 1.87 5.17 85.26 0.44 2.31 16 22 N -0.83 -44.83 10.91 21.83 0.24 -44.59 16 23 Si 0.96 41.23 29.59 68.60 2.03 43.26 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 27 C 0.06 1.69 4.91 86.33 0.42 2.12 16 28 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.42 3.61 8.84 -92.70 -0.82 2.79 16 32 H 0.41 5.78 8.62 -92.70 -0.80 4.98 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 2.12 6.94 -2.39 -0.02 2.11 16 39 H 0.06 2.39 7.44 -2.39 -0.02 2.38 16 40 H 0.04 1.31 7.84 -2.38 -0.02 1.29 16 41 H 0.11 4.02 7.98 -2.91 -0.02 4.00 16 42 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.09 5.40 6.16 -2.91 -0.02 5.38 16 45 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 46 H 0.07 2.06 7.95 -2.39 -0.02 2.04 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.54 375.62 -1.14 -71.68 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.64 Total: 32.89 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 5.89 Total: -23.32 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -8.36 Total: -100.32 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -70.54 -1.14 -71.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235528112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.165 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds