Wall clock time and date at job start Tue Mar 31 2020 11:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 111.00047 * 2 1 4 4 C 1.53046 * 109.36254 * 183.18789 * 3 2 1 5 5 N 1.46957 * 109.36569 * 301.59167 * 4 3 2 6 6 C 1.39673 * 111.00359 * 183.19107 * 5 4 3 7 7 C 1.38911 * 120.07632 * 179.97438 * 6 5 4 8 8 C 1.38102 * 119.92232 * 179.97438 * 7 6 5 9 9 C 1.38284 * 120.07680 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.92131 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47184 * 90.00001 * 10 9 8 12 12 N 1.46504 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21689 * 120.00291 * 0.02562 * 13 12 11 15 15 C 1.46380 * 119.99942 * 179.97438 * 13 12 11 16 16 H 1.08005 * 119.99707 * 0.02562 * 15 13 12 17 17 C 1.40046 * 120.00176 * 180.02562 * 15 13 12 18 18 N 1.30674 * 119.99676 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99997 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47182 * 90.00060 * 19 17 15 21 21 H 1.48509 * 109.46741 * 209.99923 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99815 * 19 17 15 23 23 C 1.38281 * 120.14874 * 0.26782 * 9 8 7 24 24 C 1.38100 * 120.07522 * 359.45506 * 23 9 8 25 25 C 1.46958 * 110.87701 * 59.32014 * 5 4 3 26 26 C 1.46964 * 110.99698 * 123.79346 * 2 1 3 27 27 H 1.09004 * 109.46873 * 60.00623 * 1 2 3 28 28 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47333 * 300.00613 * 1 2 3 30 30 H 1.08996 * 109.49111 * 63.21742 * 3 2 1 31 31 H 1.09004 * 109.50482 * 303.15883 * 3 2 1 32 32 H 1.09009 * 109.48607 * 181.62934 * 4 3 2 33 33 H 1.09000 * 109.51417 * 61.57324 * 4 3 2 34 34 H 1.07998 * 120.03739 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.95917 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47612 * 330.00056 * 10 9 8 37 37 H 1.09001 * 109.47122 * 209.99887 * 10 9 8 38 38 H 1.09001 * 109.47002 * 299.99404 * 11 10 9 39 39 H 1.08993 * 109.46955 * 59.99842 * 11 10 9 40 40 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 41 41 H 0.97006 * 119.99901 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.95770 * 179.70701 * 23 9 8 43 43 H 1.08006 * 120.03809 * 180.27348 * 24 23 9 44 44 H 1.09005 * 109.48749 * 60.65055 * 25 5 4 45 45 H 1.09004 * 109.48542 * 180.70861 * 25 5 4 46 46 H 1.09004 * 109.48869 * 296.78241 * 26 2 1 47 47 H 1.09002 * 109.48834 * 56.84365 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0500 0.5659 1.0599 6 6 5.4468 0.5659 1.0600 7 6 6.1428 -0.1023 2.0593 8 6 7.5239 -0.1007 2.0560 9 6 8.2137 0.5655 1.0597 10 6 9.7207 0.5654 1.0599 11 6 10.2308 -0.6338 0.2581 12 7 11.6958 -0.6334 0.2577 13 6 12.3697 -1.6040 -0.3906 14 8 11.7613 -2.4803 -0.9761 15 6 13.8335 -1.6034 -0.3915 16 1 14.3735 -0.8254 0.1278 17 6 14.5337 -2.6116 -1.0657 18 7 13.8803 -3.5526 -1.6943 19 14 16.4017 -2.6112 -1.0661 20 1 16.8972 -3.3891 0.0977 21 1 16.8965 -3.2302 -2.3221 22 1 16.8964 -1.2140 -0.9745 23 6 7.5239 1.2367 0.0669 24 6 6.1429 1.2344 0.0609 25 6 3.5233 -0.8060 1.0600 26 6 1.9956 -0.7631 1.1402 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6937 1.8774 0.9173 31 1 1.6014 1.9131 -0.8602 32 1 3.9177 2.3448 -0.0513 33 1 3.8257 0.8480 -1.0105 34 1 5.6046 -0.6230 2.8374 35 1 8.0657 -0.6203 2.8325 36 1 10.0841 0.4979 2.0853 37 1 10.0841 1.4872 0.6056 38 1 9.8675 -1.5556 0.7124 39 1 9.8675 -0.5662 -0.7673 40 1 12.1807 0.0652 0.7241 41 1 14.3654 -4.2511 -2.1610 42 1 8.0659 1.7599 -0.7071 43 1 5.6048 1.7551 -0.7174 44 1 3.8252 -1.3115 0.1427 45 1 3.9177 -1.3468 1.9203 46 1 1.6936 -0.2819 2.0705 47 1 1.6012 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001305972154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:38 Heat of formation + Delta-G solvation = -0.771830 kcal Electronic energy + Delta-G solvation = -25426.666106 eV Core-core repulsion = 21802.005667 eV Total energy + Delta-G solvation = -3624.660438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.58825 -38.72001 -37.27529 -35.96678 -33.85126 -32.38816 -31.87539 -31.25341 -30.57907 -29.01443 -27.05726 -25.74784 -24.60051 -24.18984 -22.50051 -22.02560 -20.88735 -19.91384 -19.61403 -17.72223 -17.10015 -15.97478 -15.69693 -15.59157 -15.41927 -15.22824 -14.95289 -14.82733 -14.44142 -14.32219 -14.01319 -13.76384 -13.49495 -13.48219 -12.88088 -12.81142 -12.54136 -12.25670 -12.14835 -11.98531 -11.72083 -11.51078 -11.40480 -11.33418 -11.17872 -11.07943 -10.95914 -10.85706 -10.48756 -10.41299 -10.19454 -9.67452 -8.90335 -8.82048 -8.79547 -7.82852 -7.56204 -7.44929 -6.15006 -4.60538 1.36532 1.44576 3.16152 3.22670 3.26256 3.39509 3.48895 3.84126 4.13603 4.41708 4.56721 4.62978 4.64572 4.78349 4.82950 4.91482 4.92374 4.96866 5.10255 5.10480 5.13007 5.32409 5.35282 5.37214 5.43699 5.45194 5.47669 5.50573 5.58880 5.66173 5.67546 5.75630 5.86219 6.00689 6.04881 6.17631 6.38072 6.52930 6.53744 6.55816 6.65980 6.73771 6.82492 6.84867 7.22185 7.46516 7.97696 8.14777 8.36778 9.05788 9.58784 10.64153 10.83077 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.838364 B =14401.942783 C =14717.663666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.052 3.948 5 N -0.491 5.491 6 C 0.099 3.901 7 C -0.137 4.137 8 C -0.090 4.090 9 C -0.092 4.092 10 C -0.089 4.089 11 C 0.140 3.860 12 N -0.770 5.770 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.088 4.088 24 C -0.167 4.167 25 C 0.058 3.942 26 C 0.055 3.945 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.268 0.732 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.961 10.721 6.564 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.072 4.072 4 C -0.075 4.075 5 N -0.207 5.207 6 C 0.002 3.998 7 C -0.157 4.157 8 C -0.109 4.109 9 C -0.093 4.093 10 C -0.127 4.127 11 C 0.015 3.985 12 N -0.425 5.425 13 C 0.357 3.643 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.398 5.398 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.107 4.107 24 C -0.187 4.187 25 C -0.067 4.067 26 C -0.073 4.073 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.211 0.789 41 H 0.078 0.922 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.516 9.871 5.998 27.101 hybrid contribution 1.036 0.436 0.331 1.172 sum -23.481 10.307 6.330 26.413 Atomic orbital electron populations 1.22348 0.86905 1.02251 1.00758 1.62161 1.08058 1.13965 1.42955 1.22204 0.94294 0.89412 1.01322 1.22340 0.94187 0.98972 0.92030 1.59320 1.05281 1.14253 1.41844 1.18831 0.87546 0.98431 0.94943 1.20699 0.93976 1.02382 0.98640 1.20950 0.93486 0.98090 0.98330 1.19778 0.95586 0.98366 0.95592 1.20807 0.90688 0.99707 1.01490 1.20816 0.83547 0.95644 0.98481 1.46151 1.04075 1.32085 1.60215 1.18226 0.88347 0.79806 0.77884 1.90599 1.70251 1.38199 1.47366 1.20898 0.89786 1.12117 1.35540 0.91438 1.25716 0.99831 0.94340 0.93390 1.70031 1.36385 1.09456 1.23896 0.86377 0.83208 0.79095 0.78078 1.19767 1.20484 1.18933 1.20937 0.93528 0.98442 0.97803 1.21225 0.94685 1.04375 0.98442 1.22315 0.94115 0.87879 1.02436 1.22215 0.94296 0.98804 0.91959 0.91219 0.91220 0.95549 0.93859 0.89896 0.89484 0.92590 0.86069 0.85757 0.90843 0.90877 0.93414 0.93446 0.78918 0.92153 0.85918 0.85827 0.92777 0.89450 0.93819 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.60 60.06 0.58 0.73 16 2 N -0.55 -4.44 4.97 -242.76 -1.21 -5.65 16 3 C 0.06 0.43 5.62 -3.77 -0.02 0.41 16 4 C 0.05 0.46 4.30 -3.77 -0.02 0.44 16 5 N -0.49 -5.05 4.75 -170.95 -0.81 -5.86 16 6 C 0.10 1.18 5.64 -83.79 -0.47 0.70 16 7 C -0.14 -1.63 9.19 -39.38 -0.36 -1.99 16 8 C -0.09 -1.15 9.69 -39.61 -0.38 -1.54 16 9 C -0.09 -1.26 5.14 -104.59 -0.54 -1.79 16 10 C -0.09 -1.29 5.46 -27.88 -0.15 -1.44 16 11 C 0.14 2.77 5.66 -4.04 -0.02 2.74 16 12 N -0.77 -17.55 5.55 -61.72 -0.34 -17.89 16 13 C 0.55 16.15 7.75 -12.99 -0.10 16.05 16 14 O -0.58 -19.38 15.02 5.20 0.08 -19.30 16 15 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 16 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 17 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 18 N -0.77 -23.48 11.83 55.55 0.66 -22.83 16 19 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.09 -1.14 9.69 -39.62 -0.38 -1.52 16 24 C -0.17 -1.98 8.82 -39.38 -0.35 -2.33 16 25 C 0.06 0.54 5.38 -3.77 -0.02 0.52 16 26 C 0.06 0.44 5.62 -3.77 -0.02 0.42 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.70 7.17 -51.92 -0.37 0.33 16 33 H 0.06 0.54 7.58 -51.93 -0.39 0.15 16 34 H 0.12 1.24 7.19 -52.49 -0.38 0.87 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.38 7.47 8.45 -40.82 -0.35 7.13 16 41 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 43 H 0.12 1.24 5.81 -52.48 -0.31 0.94 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.75 6.82 -51.93 -0.35 0.40 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.67 378.42 -11.25 -46.92 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.61 Total: 5.82 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.70 Total: -2.26 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -1.70 Total: -52.22 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.30 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.67 -11.25 -46.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001305972154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.151 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds