Wall clock time and date at job start Tue Mar 31 2020 11:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 111.00047 * 2 1 4 4 C 1.53046 * 109.36254 * 183.18789 * 3 2 1 5 5 N 1.46957 * 109.36569 * 301.59167 * 4 3 2 6 6 C 1.39673 * 111.00359 * 183.19107 * 5 4 3 7 7 C 1.38911 * 120.07632 * 179.97438 * 6 5 4 8 8 C 1.38102 * 119.92232 * 179.97438 * 7 6 5 9 9 C 1.38284 * 120.07680 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.92131 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47184 * 90.00001 * 10 9 8 12 12 N 1.46504 * 109.46883 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21689 * 120.00291 * 0.02562 * 13 12 11 15 15 C 1.46380 * 119.99942 * 179.97438 * 13 12 11 16 16 H 1.08005 * 119.99707 * 0.02562 * 15 13 12 17 17 C 1.40046 * 120.00176 * 180.02562 * 15 13 12 18 18 N 1.30674 * 119.99676 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99997 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47182 * 90.00060 * 19 17 15 21 21 H 1.48509 * 109.46741 * 209.99923 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99815 * 19 17 15 23 23 C 1.38281 * 120.14874 * 0.26782 * 9 8 7 24 24 C 1.38100 * 120.07522 * 359.45506 * 23 9 8 25 25 C 1.46958 * 110.87701 * 59.32014 * 5 4 3 26 26 C 1.46964 * 110.99698 * 123.79346 * 2 1 3 27 27 H 1.09004 * 109.46873 * 60.00623 * 1 2 3 28 28 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47333 * 300.00613 * 1 2 3 30 30 H 1.08996 * 109.49111 * 63.21742 * 3 2 1 31 31 H 1.09004 * 109.50482 * 303.15883 * 3 2 1 32 32 H 1.09009 * 109.48607 * 181.62934 * 4 3 2 33 33 H 1.09000 * 109.51417 * 61.57324 * 4 3 2 34 34 H 1.07998 * 120.03739 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.95917 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47612 * 330.00056 * 10 9 8 37 37 H 1.09001 * 109.47122 * 209.99887 * 10 9 8 38 38 H 1.09001 * 109.47002 * 299.99404 * 11 10 9 39 39 H 1.08993 * 109.46955 * 59.99842 * 11 10 9 40 40 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 41 41 H 0.97006 * 119.99901 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.95770 * 179.70701 * 23 9 8 43 43 H 1.08006 * 120.03809 * 180.27348 * 24 23 9 44 44 H 1.09005 * 109.48749 * 60.65055 * 25 5 4 45 45 H 1.09004 * 109.48542 * 180.70861 * 25 5 4 46 46 H 1.09004 * 109.48869 * 296.78241 * 26 2 1 47 47 H 1.09002 * 109.48834 * 56.84365 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0500 0.5659 1.0599 6 6 5.4468 0.5659 1.0600 7 6 6.1428 -0.1023 2.0593 8 6 7.5239 -0.1007 2.0560 9 6 8.2137 0.5655 1.0597 10 6 9.7207 0.5654 1.0599 11 6 10.2308 -0.6338 0.2581 12 7 11.6958 -0.6334 0.2577 13 6 12.3697 -1.6040 -0.3906 14 8 11.7613 -2.4803 -0.9761 15 6 13.8335 -1.6034 -0.3915 16 1 14.3735 -0.8254 0.1278 17 6 14.5337 -2.6116 -1.0657 18 7 13.8803 -3.5526 -1.6943 19 14 16.4017 -2.6112 -1.0661 20 1 16.8972 -3.3891 0.0977 21 1 16.8965 -3.2302 -2.3221 22 1 16.8964 -1.2140 -0.9745 23 6 7.5239 1.2367 0.0669 24 6 6.1429 1.2344 0.0609 25 6 3.5233 -0.8060 1.0600 26 6 1.9956 -0.7631 1.1402 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6937 1.8774 0.9173 31 1 1.6014 1.9131 -0.8602 32 1 3.9177 2.3448 -0.0513 33 1 3.8257 0.8480 -1.0105 34 1 5.6046 -0.6230 2.8374 35 1 8.0657 -0.6203 2.8325 36 1 10.0841 0.4979 2.0853 37 1 10.0841 1.4872 0.6056 38 1 9.8675 -1.5556 0.7124 39 1 9.8675 -0.5662 -0.7673 40 1 12.1807 0.0652 0.7241 41 1 14.3654 -4.2511 -2.1610 42 1 8.0659 1.7599 -0.7071 43 1 5.6048 1.7551 -0.7174 44 1 3.8252 -1.3115 0.1427 45 1 3.9177 -1.3468 1.9203 46 1 1.6936 -0.2819 2.0705 47 1 1.6012 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001305972154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:37 Heat of formation + Delta-G solvation = -26.706537 kcal Electronic energy + Delta-G solvation = -25427.790719 eV Core-core repulsion = 21802.005667 eV Total energy + Delta-G solvation = -3625.785051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41729 -39.71945 -39.17614 -36.92505 -35.48742 -34.52024 -32.66352 -32.64089 -31.42809 -30.07442 -28.60914 -27.23845 -25.34866 -25.00373 -23.80008 -22.90464 -21.84914 -21.71713 -20.69616 -19.20903 -18.48694 -17.45439 -16.89912 -16.60174 -16.33079 -16.14797 -16.02837 -15.94702 -15.80097 -15.48515 -15.42116 -14.84390 -14.62649 -14.43967 -14.39977 -13.89558 -13.70082 -13.45944 -13.18649 -13.07340 -12.82032 -12.76447 -12.64804 -12.55542 -12.43121 -12.33238 -12.19798 -12.03517 -12.00380 -11.89720 -11.61782 -10.92942 -10.58937 -9.88387 -9.86692 -9.48611 -9.38300 -8.74769 -8.28650 -6.85683 0.37615 0.48126 1.40893 1.42815 1.58279 2.25502 2.47375 2.55415 2.89426 2.91964 3.17524 3.61987 3.73543 3.84884 3.96634 4.03430 4.06260 4.09887 4.19467 4.27609 4.28696 4.30023 4.44155 4.51412 4.56809 4.59388 4.62287 4.63712 4.74078 4.75907 4.80561 4.88992 4.98266 4.99855 5.01594 5.13169 5.15379 5.29564 5.32341 5.39426 5.76065 5.76921 5.88227 5.91841 6.02204 6.04404 6.24728 6.27272 6.32056 6.86747 7.56899 8.49638 8.67839 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.838364 B =14401.942783 C =14717.663666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.562 5.562 3 C 0.060 3.940 4 C 0.051 3.949 5 N -0.493 5.493 6 C 0.098 3.902 7 C -0.143 4.143 8 C -0.097 4.097 9 C -0.112 4.112 10 C -0.070 4.070 11 C 0.145 3.855 12 N -0.755 5.755 13 C 0.534 3.466 14 O -0.636 6.636 15 C -0.573 4.573 16 H 0.090 0.910 17 C 0.025 3.975 18 N -0.824 5.824 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.247 1.247 23 C -0.097 4.097 24 C -0.173 4.173 25 C 0.058 3.942 26 C 0.060 3.940 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.038 0.962 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.811 12.139 7.450 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.287 5.287 3 C -0.068 4.068 4 C -0.076 4.076 5 N -0.209 5.209 6 C 0.001 3.999 7 C -0.163 4.163 8 C -0.116 4.116 9 C -0.114 4.114 10 C -0.107 4.107 11 C 0.020 3.980 12 N -0.410 5.410 13 C 0.338 3.662 14 O -0.523 6.523 15 C -0.610 4.610 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.453 5.453 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.170 1.170 23 C -0.115 4.115 24 C -0.193 4.193 25 C -0.067 4.067 26 C -0.068 4.068 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.398 11.351 6.925 27.786 hybrid contribution 0.842 0.009 0.060 0.844 sum -23.556 11.361 6.985 27.069 Atomic orbital electron populations 1.22380 0.85603 1.02852 1.01288 1.62184 1.09341 1.14147 1.43054 1.22194 0.93272 0.89481 1.01896 1.22408 0.95202 0.98990 0.91046 1.59359 1.04356 1.14802 1.42357 1.19049 0.88482 0.97763 0.94648 1.20898 0.93807 1.02462 0.99142 1.21126 0.94068 0.97929 0.98435 1.19761 0.95000 0.99904 0.96709 1.20617 0.91376 0.97447 1.01297 1.20861 0.81562 0.97441 0.98109 1.45818 1.05492 1.30965 1.58751 1.18688 0.89307 0.80242 0.77947 1.90551 1.71345 1.40600 1.49835 1.21464 0.90094 1.13256 1.36185 0.89150 1.27041 1.06589 0.93221 0.92075 1.70207 1.39541 1.10610 1.24991 0.84978 0.74468 0.80076 0.78487 1.18554 1.19856 1.17044 1.21116 0.94150 0.98483 0.97776 1.21438 0.94474 1.04513 0.98914 1.22349 0.95301 0.87255 1.01835 1.22184 0.93084 0.99546 0.92000 0.90481 0.90640 0.95179 0.94002 0.88453 0.88729 0.93525 0.84564 0.84956 0.89335 0.89421 0.95491 0.95610 0.76857 0.91583 0.85213 0.84226 0.94405 0.88923 0.93781 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 127.69 1.23 1.50 16 2 N -0.56 -8.33 4.97 -921.94 -4.58 -12.91 16 3 C 0.06 0.82 5.62 86.31 0.49 1.31 16 4 C 0.05 0.84 4.30 86.31 0.37 1.21 16 5 N -0.49 -9.67 4.75 -694.78 -3.30 -12.97 16 6 C 0.10 2.25 5.64 38.21 0.22 2.46 16 7 C -0.14 -3.31 9.19 22.40 0.21 -3.10 16 8 C -0.10 -2.44 9.69 22.25 0.22 -2.22 16 9 C -0.11 -3.03 5.14 -19.84 -0.10 -3.13 16 10 C -0.07 -1.97 5.46 29.85 0.16 -1.81 16 11 C 0.15 5.86 5.66 86.38 0.49 6.35 16 12 N -0.76 -34.80 5.55 -467.39 -2.59 -37.40 16 13 C 0.53 31.96 7.75 86.36 0.67 32.63 16 14 O -0.64 -44.24 15.02 -4.31 -0.06 -44.31 16 15 C -0.57 -33.04 9.54 24.83 0.24 -32.81 16 16 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 17 C 0.03 1.45 5.50 85.30 0.47 1.92 16 18 N -0.82 -51.55 11.83 21.84 0.26 -51.29 16 19 Si 1.00 41.33 29.56 68.60 2.03 43.35 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 C -0.10 -2.45 9.69 22.25 0.22 -2.23 16 24 C -0.17 -4.00 8.82 22.40 0.20 -3.80 16 25 C 0.06 1.04 5.38 86.31 0.46 1.51 16 26 C 0.06 0.87 5.62 86.31 0.49 1.36 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 1.40 7.17 -2.38 -0.02 1.39 16 33 H 0.05 0.87 7.58 -2.39 -0.02 0.85 16 34 H 0.14 2.65 7.19 -2.91 -0.02 2.63 16 35 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.40 15.34 8.45 -92.71 -0.78 14.55 16 41 H 0.27 15.50 8.29 -92.70 -0.77 14.73 16 42 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.14 2.68 5.81 -2.91 -0.02 2.66 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.09 1.52 6.82 -2.38 -0.02 1.50 16 46 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.09 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -79.45 378.42 -2.07 -81.52 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.18 Total: 32.86 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.01 Total: 1.14 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -10.22 Total: -114.56 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.06 Total: -44.31 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -79.45 -2.07 -81.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001305972154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.813 kcal (2) G-P(sol) polarization free energy of solvation -79.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds