Wall clock time and date at job start Tue Mar 31 2020 11:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00247 * 2 1 4 4 C 1.53003 * 109.47094 * 270.00030 * 3 2 1 5 5 C 1.53000 * 109.47236 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46981 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99553 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00088 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99745 * 179.97438 * 7 6 5 10 10 C 1.53781 * 113.61417 * 179.97438 * 9 7 6 11 11 C 1.53786 * 87.17350 * 139.93966 * 10 9 7 12 12 C 1.53782 * 113.61283 * 277.49692 * 9 7 6 13 13 C 1.38820 * 119.99440 * 179.97438 * 2 1 3 14 14 C 1.39802 * 119.58125 * 184.72381 * 13 2 1 15 15 C 1.38600 * 119.48846 * 179.79081 * 14 13 2 16 16 C 1.38387 * 118.68198 * 0.47964 * 15 14 13 17 17 C 1.40558 * 119.14715 * 359.74918 * 16 15 14 18 18 C 1.41318 * 119.77897 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00205 * 0.02562 * 18 17 16 20 20 C 1.40025 * 119.99724 * 180.02562 * 18 17 16 21 21 N 1.30749 * 120.00033 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47377 * 59.99645 * 22 20 18 24 24 H 1.48506 * 109.47036 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46838 * 299.99524 * 22 20 18 26 26 N 1.31951 * 119.58779 * 5.00401 * 13 2 1 27 27 H 1.09009 * 109.47102 * 89.99923 * 1 2 3 28 28 H 1.08993 * 109.47743 * 209.99823 * 1 2 3 29 29 H 1.09000 * 109.46889 * 330.00428 * 1 2 3 30 30 H 1.08994 * 109.47106 * 150.00007 * 3 2 1 31 31 H 1.09004 * 109.46972 * 29.99786 * 3 2 1 32 32 H 1.09000 * 109.47314 * 59.99600 * 4 3 2 33 33 H 1.08999 * 109.46658 * 300.00055 * 4 3 2 34 34 H 1.08994 * 109.47005 * 59.99952 * 5 4 3 35 35 H 1.09004 * 109.46932 * 299.99817 * 5 4 3 36 36 H 0.96993 * 120.00243 * 359.97438 * 6 5 4 37 37 H 1.08996 * 112.85169 * 48.79875 * 9 7 6 38 38 H 1.09002 * 113.61445 * 254.52965 * 10 9 7 39 39 H 1.09002 * 113.61408 * 25.34696 * 10 9 7 40 40 H 1.08993 * 113.61491 * 89.15923 * 11 10 9 41 41 H 1.09000 * 113.61138 * 220.06261 * 11 10 9 42 42 H 1.08997 * 113.61668 * 334.56418 * 12 9 7 43 43 H 1.08998 * 113.61674 * 105.38927 * 12 9 7 44 44 H 1.08000 * 120.25250 * 0.02562 * 14 13 2 45 45 H 1.07998 * 120.65450 * 180.23122 * 15 14 13 46 46 H 1.07993 * 120.42392 * 179.77010 * 16 15 14 47 47 H 0.96998 * 120.00236 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4426 6 7 3.4607 3.4588 -2.8238 7 6 4.1232 4.6064 -3.0700 8 8 4.5172 5.2889 -2.1482 9 6 4.3743 5.0414 -4.4909 10 6 5.1406 6.3701 -4.6020 11 6 5.9168 5.7370 -5.7689 12 6 5.6002 4.3707 -5.1329 13 6 2.1590 -1.2023 0.0005 14 6 3.5534 -1.1942 0.1007 15 6 4.2440 -2.3959 0.1054 16 6 3.5267 -3.5746 0.0000 17 6 2.1261 -3.5168 -0.1027 18 6 1.3803 -4.7124 -0.2104 19 1 1.8866 -5.6662 -0.2132 20 6 -0.0152 -4.6601 -0.3135 21 7 -0.6282 -3.5052 -0.3097 22 14 -1.0010 -6.2403 -0.4566 23 1 -0.7612 -7.0837 0.7418 24 1 -2.4469 -5.9148 -0.5511 25 1 -0.5788 -6.9785 -1.6740 26 7 1.4947 -2.3380 -0.0990 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5138 31 1 1.6084 2.0283 0.5138 32 1 1.5002 1.8406 -1.9564 33 1 3.0416 0.9506 -1.9563 34 1 4.1694 2.9057 -0.9286 35 1 2.6276 3.7951 -0.9289 36 1 3.1459 2.9127 -3.5610 37 1 3.4785 5.0012 -5.1105 38 1 4.5148 7.2115 -4.8994 39 1 5.7610 6.5903 -3.7333 40 1 5.4444 5.8864 -6.7397 41 1 6.9787 5.9831 -5.7714 42 1 6.3474 4.0433 -4.4101 43 1 5.3453 3.5975 -5.8578 44 1 4.0880 -0.2590 0.1776 45 1 5.3209 -2.4118 0.1857 46 1 4.0365 -4.5266 -0.0029 47 1 -1.5949 -3.4690 -0.3807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320741129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:28 Heat of formation + Delta-G solvation = 2.063700 kcal Electronic energy + Delta-G solvation = -25754.073848 eV Core-core repulsion = 22129.536368 eV Total energy + Delta-G solvation = -3624.537480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24661 -40.27919 -38.58277 -37.73694 -36.12101 -35.20100 -33.00582 -32.00314 -30.97783 -28.73904 -27.78595 -26.60510 -26.44394 -25.27114 -23.15719 -22.87280 -22.01558 -21.27240 -20.23947 -19.28946 -18.40382 -17.89109 -17.16282 -16.81623 -16.53472 -16.40436 -16.10522 -16.01787 -15.49248 -15.28837 -15.17900 -14.73398 -14.48210 -13.91012 -13.77481 -13.72847 -13.40618 -13.30861 -13.09161 -12.90896 -12.83176 -12.75156 -12.66718 -12.54874 -12.52378 -12.16647 -12.10149 -11.75420 -11.67200 -11.44586 -11.29728 -11.23137 -10.76007 -10.44468 -10.11843 -9.79321 -9.37919 -8.20902 -8.14184 -6.44357 1.08026 1.36059 1.42724 1.53462 1.59529 1.59917 2.15364 2.26333 2.51296 2.94409 3.53890 3.65986 3.79328 3.91239 3.91973 3.96695 4.07298 4.21411 4.28668 4.32509 4.42371 4.56716 4.61641 4.68505 4.73140 4.78982 4.80256 4.85909 4.93923 4.95937 5.02174 5.02793 5.08764 5.10712 5.11492 5.18028 5.27005 5.36408 5.38403 5.41101 5.53326 5.75880 5.99498 6.13395 6.17969 6.53534 6.62201 6.70101 6.92151 7.21845 7.22855 8.36116 8.52934 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.002310 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.686476 B =12119.696568 C =12235.764219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.622 5.622 3 C 0.135 3.865 4 C -0.131 4.131 5 C 0.130 3.870 6 N -0.720 5.720 7 C 0.515 3.485 8 O -0.588 6.588 9 C -0.138 4.138 10 C -0.125 4.125 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.393 3.607 14 C -0.364 4.364 15 C -0.032 4.032 16 C -0.346 4.346 17 C 0.257 3.743 18 C -0.470 4.470 19 H 0.083 0.917 20 C 0.029 3.971 21 N -0.743 5.743 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.262 1.262 26 N -0.554 5.554 27 H 0.026 0.974 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.413 0.587 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.099 0.901 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 15.399 -9.625 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.338 5.338 3 C 0.012 3.988 4 C -0.171 4.171 5 C 0.005 3.995 6 N -0.371 5.371 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.158 4.158 10 C -0.163 4.163 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.153 3.847 14 C -0.390 4.390 15 C -0.056 4.056 16 C -0.369 4.369 17 C 0.130 3.870 18 C -0.502 4.502 19 H 0.101 0.899 20 C -0.194 4.194 21 N -0.365 5.365 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.192 1.192 25 H -0.187 1.187 26 N -0.276 5.276 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.249 0.751 37 H 0.156 0.844 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.117 0.883 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.201 16.102 -9.019 18.731 hybrid contribution 0.381 -1.189 -0.024 1.248 sum 3.582 14.913 -9.043 17.805 Atomic orbital electron populations 1.21263 0.79573 1.01703 0.99835 1.46171 1.05155 1.02029 1.80443 1.21322 0.97589 0.84124 0.95811 1.22056 1.00644 0.95543 0.98837 1.21149 0.99698 0.95379 0.83265 1.46046 1.57701 1.24062 1.09304 1.21168 0.76145 0.80098 0.92242 1.90663 1.52816 1.55453 1.47912 1.22951 1.01267 0.99846 0.91785 1.22807 0.98789 0.95592 0.99144 1.22867 1.01147 0.94691 0.98148 1.22870 0.95262 0.98337 0.99688 1.18952 0.88380 0.87585 0.89742 1.20965 0.93093 0.98084 1.26809 1.20984 0.98749 0.92090 0.93747 1.21670 0.95274 0.97670 1.22256 1.18684 0.89620 0.91270 0.87425 1.19855 0.92552 0.92846 1.44959 0.89910 1.26868 0.98984 1.00714 0.92808 1.70216 1.09867 1.27150 1.29296 0.85271 0.76978 0.77694 0.79738 1.18730 1.19232 1.18652 1.68216 1.37376 0.96140 1.25844 0.95579 0.92709 0.90646 0.90791 0.88861 0.90860 0.92526 0.92335 0.91257 0.75076 0.84407 0.90103 0.91167 0.87881 0.90700 0.91236 0.88859 0.86312 0.85675 0.88320 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.43 10.46 127.77 1.34 5.77 16 2 N -0.62 -23.97 2.98 -728.74 -2.17 -26.15 16 3 C 0.14 3.81 5.28 86.38 0.46 4.27 16 4 C -0.13 -3.19 5.65 30.60 0.17 -3.02 16 5 C 0.13 2.86 5.67 86.38 0.49 3.35 16 6 N -0.72 -14.22 5.56 -463.06 -2.57 -16.80 16 7 C 0.52 11.61 7.35 87.66 0.64 12.25 16 8 O -0.59 -18.36 15.90 -3.02 -0.05 -18.40 16 9 C -0.14 -2.05 4.15 -11.01 -0.05 -2.10 16 10 C -0.13 -1.91 7.40 31.12 0.23 -1.68 16 11 C -0.13 -1.42 8.10 31.20 0.25 -1.17 16 12 C -0.12 -1.60 7.64 31.20 0.24 -1.36 16 13 C 0.39 18.84 7.37 133.42 0.98 19.83 16 14 C -0.36 -16.14 9.29 22.73 0.21 -15.93 16 15 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 16 C -0.35 -17.72 9.83 22.87 0.22 -17.49 16 17 C 0.26 14.58 6.55 40.18 0.26 14.84 16 18 C -0.47 -25.95 9.14 23.46 0.21 -25.74 16 19 H 0.08 4.32 7.85 -2.92 -0.02 4.30 16 20 C 0.03 1.46 5.50 85.29 0.47 1.93 16 21 N -0.74 -39.07 11.46 21.84 0.25 -38.82 16 22 Si 0.98 38.25 29.56 68.60 2.03 40.28 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 N -0.55 -30.58 6.64 -186.58 -1.24 -31.82 16 27 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.05 2.45 7.44 -2.39 -0.02 2.43 16 29 H 0.08 2.16 7.89 -2.39 -0.02 2.14 16 30 H 0.07 2.12 5.97 -2.39 -0.01 2.11 16 31 H 0.09 2.14 7.89 -2.39 -0.02 2.12 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 6.26 8.47 -92.71 -0.79 5.47 16 37 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.43 7.43 -2.39 -0.02 1.41 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.12 4.53 6.01 -2.91 -0.02 4.51 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 47 H 0.28 13.12 8.29 -92.71 -0.77 12.35 16 Total: -1.00 -70.35 385.82 2.79 -67.56 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.18 Total: 31.58 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 6.37 Total: -7.45 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -5.74 Total: -113.58 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.40 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -70.35 2.79 -67.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320741129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.627 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds