Wall clock time and date at job start Tue Mar 31 2020 11:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00198 * 2 1 4 4 C 1.46901 * 110.99742 * 123.94942 * 2 1 3 5 5 C 1.53003 * 109.47387 * 75.30406 * 4 2 1 6 6 H 1.09001 * 110.88525 * 307.84498 * 5 4 2 7 7 C 1.55155 * 111.00728 * 183.95862 * 5 4 2 8 8 C 1.54320 * 102.94007 * 206.38395 * 7 5 4 9 9 N 1.47022 * 107.27491 * 22.19688 * 8 7 5 10 10 C 1.34778 * 125.65206 * 181.02075 * 9 8 7 11 11 O 1.21585 * 120.00021 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99600 * 0.02562 * 10 9 8 13 13 C 1.39960 * 119.99604 * 185.15279 * 12 10 9 14 14 C 1.39284 * 119.94591 * 33.51067 * 13 12 10 15 15 C 1.38493 * 120.42635 * 180.23608 * 14 13 12 16 16 C 1.37679 * 120.31793 * 359.48547 * 15 14 13 17 17 C 1.40740 * 119.88730 * 0.25796 * 16 15 14 18 18 C 1.41412 * 120.21221 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99912 * 208.66980 * 18 17 16 20 20 C 1.39936 * 119.99725 * 28.66035 * 18 17 16 21 21 N 1.30823 * 120.00248 * 10.41032 * 20 18 17 22 22 Si 1.86804 * 119.99808 * 190.40523 * 20 18 17 23 23 H 1.48500 * 109.46748 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46910 * 120.00114 * 22 20 18 25 25 H 1.48492 * 109.47331 * 240.00217 * 22 20 18 26 26 C 1.38238 * 119.94365 * 213.23318 * 13 12 10 27 27 C 1.47425 * 108.70214 * 1.28280 * 9 8 7 28 28 H 1.08997 * 109.47336 * 296.05247 * 1 2 3 29 29 H 1.09004 * 109.46937 * 56.05115 * 1 2 3 30 30 H 1.08998 * 109.47736 * 176.04755 * 1 2 3 31 31 H 1.09000 * 109.46814 * 188.75633 * 3 2 1 32 32 H 1.09004 * 109.46604 * 308.74883 * 3 2 1 33 33 H 1.08992 * 109.47218 * 68.75204 * 3 2 1 34 34 H 1.09001 * 109.46995 * 315.30770 * 4 2 1 35 35 H 1.08998 * 109.47365 * 195.30324 * 4 2 1 36 36 H 1.08997 * 110.71969 * 88.02463 * 7 5 4 37 37 H 1.08995 * 110.87243 * 324.82429 * 7 5 4 38 38 H 1.09005 * 109.88763 * 262.77375 * 8 7 5 39 39 H 1.09010 * 110.00988 * 141.68148 * 8 7 5 40 40 H 0.97002 * 120.00448 * 5.15255 * 12 10 9 41 41 H 1.07999 * 119.79038 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.83874 * 179.76682 * 15 14 13 43 43 H 1.08003 * 120.05757 * 180.23106 * 16 15 14 44 44 H 0.96997 * 119.99997 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.16138 * 0.02562 * 26 13 12 46 46 H 1.08992 * 110.36911 * 94.48155 * 27 9 8 47 47 H 1.09003 * 110.36902 * 216.81067 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8365 -2.2625 0.8622 6 1 0.8095 -2.4997 0.5844 7 6 2.2907 -3.1042 2.0840 8 6 2.7119 -4.4436 1.4435 9 7 3.0165 -4.1751 0.0305 10 6 3.4032 -5.0927 -0.8778 11 8 3.6299 -4.7557 -2.0238 12 7 3.5384 -6.3839 -0.5157 13 6 4.0427 -7.3174 -1.4284 14 6 5.0044 -6.9307 -2.3588 15 6 5.5067 -7.8451 -3.2697 16 6 5.0680 -9.1500 -3.2583 17 6 4.1005 -9.5565 -2.3206 18 6 3.6445 -10.8950 -2.3032 19 1 2.6460 -11.1209 -1.9592 20 6 4.4871 -11.9267 -2.7319 21 7 5.7538 -11.6871 -2.9543 22 14 3.8031 -13.6463 -2.9865 23 1 2.3524 -13.6539 -2.6694 24 1 4.0025 -14.0539 -4.4005 25 1 4.5106 -14.5979 -2.0926 26 6 3.5897 -8.6232 -1.4013 27 6 2.8352 -2.7349 -0.2268 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0739 1.3465 -0.1564 32 1 1.5251 1.9411 -0.8015 33 1 1.7780 1.8441 0.9577 34 1 1.4435 -0.5020 2.0398 35 1 3.0509 -0.5320 1.2759 36 1 1.4642 -3.2522 2.7790 37 1 3.1360 -2.6343 2.5866 38 1 1.8957 -5.1625 1.5167 39 1 3.5967 -4.8352 1.9456 40 1 3.2863 -6.6662 0.3774 41 1 5.3577 -5.9102 -2.3727 42 1 6.2494 -7.5340 -3.9893 43 1 5.4653 -9.8605 -3.9682 44 1 6.3379 -12.4023 -3.2511 45 1 2.8470 -8.9249 -0.6776 46 1 3.7849 -2.2093 -0.1275 47 1 2.4153 -2.5769 -1.2202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364370119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:17 Heat of formation + Delta-G solvation = 3.385789 kcal Electronic energy + Delta-G solvation = -25953.238471 eV Core-core repulsion = 22328.758321 eV Total energy + Delta-G solvation = -3624.480150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26219 -38.69322 -37.36805 -36.50362 -34.31379 -33.08492 -32.00275 -29.74742 -29.52203 -28.19249 -27.92639 -26.28640 -25.15170 -23.72452 -22.05911 -21.21260 -20.85951 -20.30999 -19.32707 -17.90818 -17.42591 -16.59575 -15.66565 -15.57584 -15.46930 -15.08061 -14.91172 -14.79367 -14.28878 -14.25322 -13.68330 -13.29959 -12.96938 -12.85917 -12.80377 -12.70132 -12.66534 -12.25482 -12.11947 -12.03054 -11.79904 -11.60818 -11.28132 -11.26251 -11.09250 -11.06566 -10.84853 -10.55522 -10.49983 -10.12034 -9.65780 -9.46575 -9.17834 -8.88976 -8.69629 -8.47559 -7.35720 -6.76551 -6.61993 -4.31425 2.77494 2.87257 2.98737 3.12242 3.17588 3.27353 3.53390 3.74475 4.00289 4.24452 4.36476 4.46463 4.60048 4.75821 4.79014 4.89145 5.01089 5.04701 5.12211 5.18325 5.29924 5.37980 5.40987 5.47150 5.54562 5.55875 5.61524 5.75418 5.80261 5.94858 6.04498 6.26392 6.40621 6.63868 6.65696 6.66364 6.83954 7.00066 7.03597 7.11601 7.31981 7.45781 7.71478 7.87506 8.11939 8.15662 8.31360 8.47583 8.70918 8.96210 8.99822 9.10959 10.31821 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.002264 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.016689 B =12361.842767 C =12694.902087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.097 4.097 6 H 0.086 0.914 7 C -0.124 4.124 8 C 0.099 3.901 9 N -0.643 5.643 10 C 0.717 3.283 11 O -0.568 6.568 12 N -0.679 5.679 13 C 0.168 3.832 14 C -0.220 4.220 15 C -0.098 4.098 16 C -0.162 4.162 17 C 0.121 3.879 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.805 5.805 22 Si 0.910 3.090 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.276 1.276 26 C -0.243 4.243 27 C 0.144 3.856 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.395 0.605 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.278 0.722 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 19.186 11.582 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.117 4.117 6 H 0.104 0.896 7 C -0.162 4.162 8 C -0.025 4.025 9 N -0.384 5.384 10 C 0.420 3.580 11 O -0.444 6.444 12 N -0.325 5.325 13 C 0.076 3.924 14 C -0.241 4.241 15 C -0.117 4.117 16 C -0.182 4.182 17 C 0.118 3.882 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.431 5.431 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.265 4.265 27 C 0.021 3.979 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.229 0.771 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.911 19.054 10.178 22.680 hybrid contribution -0.641 -0.575 1.236 1.506 sum -7.552 18.479 11.414 22.995 Atomic orbital electron populations 1.22446 0.87255 1.02524 1.00346 1.61915 1.08092 1.13837 1.43194 1.22392 1.01108 0.88651 1.00179 1.22086 1.00462 0.92400 0.91238 1.22416 1.00237 0.93740 0.95271 0.89565 1.22626 1.01695 0.94714 0.97199 1.21955 1.00326 0.97891 0.82316 1.47651 1.73152 1.08276 1.09271 1.15473 0.78362 0.80413 0.83750 1.90941 1.56680 1.79441 1.17370 1.42640 1.67361 1.06211 1.16264 1.17241 0.95044 0.87727 0.92379 1.20384 1.02540 0.99130 1.02045 1.20610 0.99203 0.93958 0.97948 1.21425 1.01856 0.94118 1.00786 1.17374 0.90271 0.92180 0.88389 1.19514 1.00399 0.90826 1.38800 0.90633 1.25860 0.94346 1.01246 0.92821 1.69806 1.04249 1.34436 1.34624 0.86240 0.80189 0.81462 0.78624 1.18594 1.19868 1.20124 1.20708 1.08311 0.92826 1.04625 1.21965 0.97778 0.78689 0.99514 0.95755 0.91335 0.91111 0.91170 0.91335 0.95778 0.94063 0.90429 0.90098 0.90415 0.91734 0.91590 0.77133 0.87927 0.89035 0.86066 0.91153 0.88790 0.92054 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 60.06 0.56 0.72 16 2 N -0.55 -4.42 4.88 -251.26 -1.23 -5.65 16 3 C 0.02 0.16 9.53 60.07 0.57 0.74 16 4 C 0.07 0.48 4.45 -3.82 -0.02 0.46 16 5 C -0.10 -0.82 3.10 -88.35 -0.27 -1.10 16 6 H 0.09 0.77 6.79 -51.93 -0.35 0.42 16 7 C -0.12 -0.89 6.41 -24.90 -0.16 -1.05 16 8 C 0.10 0.99 6.16 -3.07 -0.02 0.97 16 9 N -0.64 -9.26 3.32 -176.09 -0.59 -9.84 16 10 C 0.72 13.96 8.22 -86.92 -0.71 13.25 16 11 O -0.57 -13.45 14.28 5.29 0.08 -13.37 16 12 N -0.68 -13.18 5.29 -14.27 -0.08 -13.26 16 13 C 0.17 4.01 6.27 -83.76 -0.52 3.49 16 14 C -0.22 -5.51 8.66 -39.10 -0.34 -5.85 16 15 C -0.10 -2.49 10.02 -39.69 -0.40 -2.88 16 16 C -0.16 -4.39 8.66 -38.84 -0.34 -4.73 16 17 C 0.12 3.31 5.55 -106.85 -0.59 2.71 16 18 C -0.46 -12.54 9.06 -37.74 -0.34 -12.88 16 19 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 20 C 0.07 1.87 5.26 -17.35 -0.09 1.78 16 21 N -0.80 -21.25 10.81 55.55 0.60 -20.65 16 22 Si 0.91 19.08 29.57 -169.99 -5.03 14.05 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 26 C -0.24 -6.08 9.70 -38.69 -0.38 -6.45 16 27 C 0.14 1.77 6.31 -2.41 -0.02 1.76 16 28 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.51 6.79 -51.93 -0.35 0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.41 8.04 -51.93 -0.42 0.00 16 33 H 0.02 0.14 8.13 -51.93 -0.42 -0.28 16 34 H 0.04 0.26 7.97 -51.93 -0.41 -0.15 16 35 H 0.08 0.54 7.79 -51.93 -0.40 0.13 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 38 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 39 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.39 6.30 7.80 -40.82 -0.32 5.98 16 41 H 0.10 2.58 6.40 -52.49 -0.34 2.25 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.12 3.36 6.19 -52.48 -0.32 3.04 16 44 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.06 0.75 7.93 -51.93 -0.41 0.33 16 47 H 0.08 1.19 8.03 -51.93 -0.42 0.78 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -32.31 377.13 -11.13 -43.43 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.51 Total: 8.66 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.06 Total: -9.07 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.29 Total: -49.39 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.31 -11.13 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364370119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.820 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds