Wall clock time and date at job start Tue Mar 31 2020 11:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00198 * 2 1 4 4 C 1.46901 * 110.99742 * 123.94942 * 2 1 3 5 5 C 1.53003 * 109.47387 * 75.30406 * 4 2 1 6 6 H 1.09001 * 110.88525 * 307.84498 * 5 4 2 7 7 C 1.55155 * 111.00728 * 183.95862 * 5 4 2 8 8 C 1.54320 * 102.94007 * 206.38395 * 7 5 4 9 9 N 1.47022 * 107.27491 * 22.19688 * 8 7 5 10 10 C 1.34778 * 125.65206 * 181.02075 * 9 8 7 11 11 O 1.21585 * 120.00021 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99600 * 0.02562 * 10 9 8 13 13 C 1.39960 * 119.99604 * 185.15279 * 12 10 9 14 14 C 1.39284 * 119.94591 * 33.51067 * 13 12 10 15 15 C 1.38493 * 120.42635 * 180.23608 * 14 13 12 16 16 C 1.37679 * 120.31793 * 359.48547 * 15 14 13 17 17 C 1.40740 * 119.88730 * 0.25796 * 16 15 14 18 18 C 1.41412 * 120.21221 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99912 * 208.66980 * 18 17 16 20 20 C 1.39936 * 119.99725 * 28.66035 * 18 17 16 21 21 N 1.30823 * 120.00248 * 10.41032 * 20 18 17 22 22 Si 1.86804 * 119.99808 * 190.40523 * 20 18 17 23 23 H 1.48500 * 109.46748 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46910 * 120.00114 * 22 20 18 25 25 H 1.48492 * 109.47331 * 240.00217 * 22 20 18 26 26 C 1.38238 * 119.94365 * 213.23318 * 13 12 10 27 27 C 1.47425 * 108.70214 * 1.28280 * 9 8 7 28 28 H 1.08997 * 109.47336 * 296.05247 * 1 2 3 29 29 H 1.09004 * 109.46937 * 56.05115 * 1 2 3 30 30 H 1.08998 * 109.47736 * 176.04755 * 1 2 3 31 31 H 1.09000 * 109.46814 * 188.75633 * 3 2 1 32 32 H 1.09004 * 109.46604 * 308.74883 * 3 2 1 33 33 H 1.08992 * 109.47218 * 68.75204 * 3 2 1 34 34 H 1.09001 * 109.46995 * 315.30770 * 4 2 1 35 35 H 1.08998 * 109.47365 * 195.30324 * 4 2 1 36 36 H 1.08997 * 110.71969 * 88.02463 * 7 5 4 37 37 H 1.08995 * 110.87243 * 324.82429 * 7 5 4 38 38 H 1.09005 * 109.88763 * 262.77375 * 8 7 5 39 39 H 1.09010 * 110.00988 * 141.68148 * 8 7 5 40 40 H 0.97002 * 120.00448 * 5.15255 * 12 10 9 41 41 H 1.07999 * 119.79038 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.83874 * 179.76682 * 15 14 13 43 43 H 1.08003 * 120.05757 * 180.23106 * 16 15 14 44 44 H 0.96997 * 119.99997 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.16138 * 0.02562 * 26 13 12 46 46 H 1.08992 * 110.36911 * 94.48155 * 27 9 8 47 47 H 1.09003 * 110.36902 * 216.81067 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8365 -2.2625 0.8622 6 1 0.8095 -2.4997 0.5844 7 6 2.2907 -3.1042 2.0840 8 6 2.7119 -4.4436 1.4435 9 7 3.0165 -4.1751 0.0305 10 6 3.4032 -5.0927 -0.8778 11 8 3.6299 -4.7557 -2.0238 12 7 3.5384 -6.3839 -0.5157 13 6 4.0427 -7.3174 -1.4284 14 6 5.0044 -6.9307 -2.3588 15 6 5.5067 -7.8451 -3.2697 16 6 5.0680 -9.1500 -3.2583 17 6 4.1005 -9.5565 -2.3206 18 6 3.6445 -10.8950 -2.3032 19 1 2.6460 -11.1209 -1.9592 20 6 4.4871 -11.9267 -2.7319 21 7 5.7538 -11.6871 -2.9543 22 14 3.8031 -13.6463 -2.9865 23 1 2.3524 -13.6539 -2.6694 24 1 4.0025 -14.0539 -4.4005 25 1 4.5106 -14.5979 -2.0926 26 6 3.5897 -8.6232 -1.4013 27 6 2.8352 -2.7349 -0.2268 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0739 1.3465 -0.1564 32 1 1.5251 1.9411 -0.8015 33 1 1.7780 1.8441 0.9577 34 1 1.4435 -0.5020 2.0398 35 1 3.0509 -0.5320 1.2759 36 1 1.4642 -3.2522 2.7790 37 1 3.1360 -2.6343 2.5866 38 1 1.8957 -5.1625 1.5167 39 1 3.5967 -4.8352 1.9456 40 1 3.2863 -6.6662 0.3774 41 1 5.3577 -5.9102 -2.3727 42 1 6.2494 -7.5340 -3.9893 43 1 5.4653 -9.8605 -3.9682 44 1 6.3379 -12.4023 -3.2511 45 1 2.8470 -8.9249 -0.6776 46 1 3.7849 -2.2093 -0.1275 47 1 2.4153 -2.5769 -1.2202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364370119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:16 Heat of formation + Delta-G solvation = -16.871440 kcal Electronic energy + Delta-G solvation = -25954.116891 eV Core-core repulsion = 22328.758321 eV Total energy + Delta-G solvation = -3625.358570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63449 -39.85935 -38.83581 -37.54707 -36.12164 -34.89086 -33.08498 -31.74818 -30.33492 -29.91531 -28.44196 -27.27630 -27.08924 -24.74389 -22.98858 -22.71221 -22.67930 -21.10996 -20.83447 -19.47821 -19.03097 -17.60514 -17.35161 -16.81941 -16.64256 -16.25496 -16.14867 -16.07410 -15.68795 -15.27654 -14.86744 -14.65814 -14.50712 -14.12030 -14.00063 -13.95762 -13.51966 -13.36722 -13.23336 -13.08920 -12.98053 -12.80879 -12.56396 -12.50573 -12.36800 -12.32778 -11.99630 -11.89743 -11.81112 -11.54462 -11.48287 -11.26395 -11.06623 -10.76565 -9.69959 -9.37541 -9.23022 -8.66269 -8.55164 -6.36462 0.94230 0.97594 1.41514 1.50157 1.56444 1.60147 2.13976 2.24870 2.80599 2.93972 3.06300 3.63621 3.66159 3.74207 3.89044 4.25171 4.26858 4.38479 4.40682 4.47084 4.49748 4.59534 4.65052 4.69042 4.71949 4.78985 4.84147 4.91079 4.97277 5.00432 5.02088 5.06310 5.06964 5.10581 5.13234 5.15793 5.31788 5.35334 5.42576 5.75865 5.81594 6.04330 6.11018 6.13403 6.14121 6.19388 6.36450 6.69452 6.92923 6.95960 7.02432 7.53199 8.40826 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.002264 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.016689 B =12361.842767 C =12694.902087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.571 5.571 3 C 0.026 3.974 4 C 0.071 3.929 5 C -0.084 4.084 6 H 0.083 0.917 7 C -0.110 4.110 8 C 0.087 3.913 9 N -0.637 5.637 10 C 0.711 3.289 11 O -0.618 6.618 12 N -0.670 5.670 13 C 0.179 3.821 14 C -0.234 4.234 15 C -0.099 4.099 16 C -0.188 4.188 17 C 0.094 3.906 18 C -0.495 4.495 19 H 0.078 0.922 20 C 0.030 3.970 21 N -0.833 5.833 22 Si 0.988 3.012 23 H -0.257 1.257 24 H -0.267 1.267 25 H -0.265 1.265 26 C -0.252 4.252 27 C 0.139 3.861 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.413 0.587 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 19.503 13.987 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.295 5.295 3 C -0.122 4.122 4 C -0.057 4.057 5 C -0.104 4.104 6 H 0.101 0.899 7 C -0.148 4.148 8 C -0.035 4.035 9 N -0.375 5.375 10 C 0.414 3.586 11 O -0.498 6.498 12 N -0.318 5.318 13 C 0.086 3.914 14 C -0.256 4.256 15 C -0.118 4.118 16 C -0.208 4.208 17 C 0.091 3.909 18 C -0.525 4.525 19 H 0.096 0.904 20 C -0.183 4.183 21 N -0.460 5.460 22 Si 0.808 3.192 23 H -0.181 1.181 24 H -0.192 1.192 25 H -0.190 1.190 26 C -0.274 4.274 27 C 0.017 3.983 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.250 0.750 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.081 0.919 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.128 19.423 12.663 24.570 hybrid contribution -0.260 -0.548 0.520 0.799 sum -8.388 18.875 13.183 24.503 Atomic orbital electron populations 1.22427 0.86785 1.02280 1.00931 1.61901 1.08773 1.14796 1.44058 1.22385 1.00913 0.88063 1.00828 1.22060 1.01000 0.91050 0.91622 1.22340 0.98697 0.95008 0.94325 0.89879 1.22644 1.03238 0.92337 0.96592 1.22348 1.01298 1.00243 0.79634 1.47693 1.71122 1.08188 1.10472 1.15663 0.78347 0.80719 0.83905 1.90900 1.58840 1.80227 1.19858 1.42413 1.67108 1.05845 1.16400 1.17241 0.93877 0.88137 0.92193 1.20479 1.03415 0.98844 1.02823 1.20814 0.99267 0.93489 0.98252 1.21358 1.03355 0.94572 1.01542 1.17765 0.90816 0.93240 0.89039 1.19789 1.00948 0.91398 1.40335 0.90353 1.26786 0.94358 1.05428 0.91738 1.69874 1.05476 1.36228 1.34405 0.85077 0.79530 0.75771 0.78785 1.18091 1.19191 1.19020 1.20856 1.08740 0.93054 1.04787 1.22121 0.98923 0.77620 0.99673 0.94609 0.91405 0.91671 0.91397 0.91237 0.94691 0.92151 0.90046 0.87316 0.88807 0.90675 0.90576 0.75008 0.88264 0.87298 0.87454 0.90290 0.87130 0.91912 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 127.69 1.20 1.50 16 2 N -0.57 -8.39 4.88 -948.85 -4.63 -13.02 16 3 C 0.03 0.30 9.53 127.69 1.22 1.52 16 4 C 0.07 0.83 4.45 86.30 0.38 1.22 16 5 C -0.08 -1.23 3.10 -9.32 -0.03 -1.26 16 6 H 0.08 1.31 6.79 -2.39 -0.02 1.30 16 7 C -0.11 -1.15 6.41 31.78 0.20 -0.95 16 8 C 0.09 1.50 6.16 86.73 0.53 2.04 16 9 N -0.64 -17.75 3.32 -829.29 -2.76 -20.51 16 10 C 0.71 27.78 8.22 179.05 1.47 29.25 16 11 O -0.62 -30.12 14.28 -3.98 -0.06 -30.17 16 12 N -0.67 -25.78 5.29 -317.32 -1.68 -27.45 16 13 C 0.18 8.64 6.27 38.09 0.24 8.88 16 14 C -0.23 -12.04 8.66 22.58 0.20 -11.84 16 15 C -0.10 -5.18 10.02 22.20 0.22 -4.96 16 16 C -0.19 -10.57 8.66 22.75 0.20 -10.37 16 17 C 0.09 5.29 5.55 -21.31 -0.12 5.17 16 18 C -0.49 -27.08 9.06 23.46 0.21 -26.87 16 19 H 0.08 4.10 7.87 -2.91 -0.02 4.07 16 20 C 0.03 1.56 5.26 85.25 0.45 2.01 16 21 N -0.83 -44.57 10.81 21.82 0.24 -44.33 16 22 Si 0.99 38.79 29.57 68.60 2.03 40.82 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 26 C -0.25 -12.77 9.70 22.85 0.22 -12.55 16 27 C 0.14 3.36 6.31 86.93 0.55 3.91 16 28 H 0.04 0.36 8.09 -2.39 -0.02 0.34 16 29 H 0.07 0.83 8.07 -2.38 -0.02 0.81 16 30 H 0.06 0.86 6.79 -2.39 -0.02 0.85 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.77 8.04 -2.39 -0.02 0.75 16 33 H 0.03 0.33 8.13 -2.39 -0.02 0.31 16 34 H 0.06 0.52 7.97 -2.39 -0.02 0.50 16 35 H 0.08 0.91 7.79 -2.39 -0.02 0.89 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 38 H 0.07 1.19 8.12 -2.38 -0.02 1.17 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.41 12.61 7.80 -92.71 -0.72 11.88 16 41 H 0.10 5.14 6.40 -2.91 -0.02 5.12 16 42 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 43 H 0.11 6.22 6.19 -2.91 -0.02 6.20 16 44 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 45 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 46 H 0.06 1.50 7.93 -2.39 -0.02 1.48 16 47 H 0.05 1.56 8.03 -2.39 -0.02 1.54 16 Total: -1.00 -72.54 377.13 0.53 -72.01 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.24 Total: 35.97 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 7.15 Total: -13.31 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -8.83 Total: -105.31 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.17 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -72.54 0.53 -72.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364370119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.138 kcal (2) G-P(sol) polarization free energy of solvation -72.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds