Wall clock time and date at job start Tue Mar 31 2020 11:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 120.00179 * 2 1 4 4 O 1.21576 * 120.00003 * 180.02562 * 3 2 1 5 5 N 1.34775 * 119.99752 * 0.02562 * 3 2 1 6 6 C 1.39238 * 119.99983 * 175.70736 * 5 3 2 7 7 C 1.39475 * 119.83527 * 215.08712 * 6 5 3 8 8 C 1.36383 * 120.17062 * 179.71701 * 7 6 5 9 9 C 1.40871 * 119.82275 * 0.55449 * 8 7 6 10 10 C 1.41156 * 120.15914 * 179.69932 * 9 8 7 11 11 H 1.07998 * 120.00062 * 214.75365 * 10 9 8 12 12 C 1.39886 * 120.00240 * 34.75389 * 10 9 8 13 13 N 1.30880 * 120.00168 * 355.69071 * 12 10 9 14 14 Si 1.86802 * 120.00209 * 175.68998 * 12 10 9 15 15 H 1.48503 * 109.46978 * 89.99984 * 14 12 10 16 16 H 1.48499 * 109.47346 * 209.99924 * 14 12 10 17 17 H 1.48496 * 109.47168 * 330.00302 * 14 12 10 18 18 C 1.40861 * 119.67367 * 359.72239 * 9 8 7 19 19 C 1.36367 * 119.83254 * 359.97438 * 18 9 8 20 20 C 1.46495 * 119.99848 * 180.02562 * 2 1 3 21 21 C 1.53122 * 109.52613 * 59.68101 * 20 2 1 22 22 C 1.53035 * 109.28182 * 182.44017 * 21 20 2 23 23 N 1.46847 * 109.52154 * 59.17859 * 22 21 20 24 24 C 1.46904 * 110.99812 * 174.15905 * 23 22 21 25 25 C 1.46846 * 111.19806 * 298.25773 * 23 22 21 26 26 C 1.53034 * 109.52462 * 61.74503 * 25 23 22 27 27 H 1.08997 * 109.47112 * 89.99494 * 1 2 3 28 28 H 1.09005 * 109.47150 * 210.00431 * 1 2 3 29 29 H 1.09006 * 109.46962 * 329.99958 * 1 2 3 30 30 H 0.97000 * 120.00232 * 355.42724 * 5 3 2 31 31 H 1.08004 * 119.91926 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.09033 * 180.27405 * 8 7 6 33 33 H 0.97007 * 120.00576 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.08609 * 179.97438 * 18 9 8 35 35 H 1.08001 * 119.91831 * 179.97438 * 19 18 9 36 36 H 1.08999 * 109.52334 * 179.86914 * 20 2 1 37 37 H 1.09002 * 109.50142 * 302.38200 * 21 20 2 38 38 H 1.08996 * 109.50118 * 62.49566 * 21 20 2 39 39 H 1.08996 * 109.46378 * 299.16494 * 22 21 20 40 40 H 1.08994 * 109.46312 * 179.19345 * 22 21 20 41 41 H 1.09005 * 109.46677 * 184.20823 * 24 23 22 42 42 H 1.08992 * 109.47282 * 304.21122 * 24 23 22 43 43 H 1.09006 * 109.46605 * 64.21545 * 24 23 22 44 44 H 1.08999 * 109.46398 * 301.72642 * 25 23 22 45 45 H 1.09006 * 109.45137 * 181.75214 * 25 23 22 46 46 H 1.08999 * 109.50623 * 180.87586 * 26 25 23 47 47 H 1.09004 * 109.53419 * 60.77658 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1584 3.5385 0.0908 7 6 1.6028 4.6081 0.7927 8 6 2.2785 5.7888 0.8903 9 6 3.5354 5.9300 0.2700 10 6 4.2380 7.1509 0.3611 11 1 4.8387 7.4915 -0.4692 12 6 4.1564 7.9196 1.5270 13 7 3.3630 7.5502 2.5002 14 14 5.1797 9.4734 1.6950 15 1 4.4099 10.6317 1.1743 16 1 5.5060 9.6989 3.1260 17 1 6.4364 9.3248 0.9181 18 6 4.0873 4.8471 -0.4420 19 6 3.4026 3.6708 -0.5257 20 6 2.1975 -1.2687 -0.0006 21 6 1.8224 -2.0756 -1.2467 22 6 2.5436 -3.4249 -1.2110 23 7 2.1568 -4.1561 0.0023 24 6 2.7216 -5.5123 0.0022 25 6 2.5495 -3.4225 1.2123 26 6 1.8285 -2.0732 1.2489 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.4974 2.3358 -0.0661 31 1 0.6370 4.4999 1.2637 32 1 1.8491 6.6147 1.4379 33 1 3.3066 8.0830 3.3089 34 1 5.0503 4.9482 -0.9205 35 1 3.8243 2.8397 -1.0716 36 1 3.2693 -1.0705 -0.0028 37 1 0.7449 -2.2393 -1.2636 38 1 2.1217 -1.5265 -2.1394 39 1 3.6212 -3.2608 -1.2081 40 1 2.2675 -4.0076 -2.0897 41 1 2.3592 -6.0568 0.8742 42 1 2.4153 -6.0333 -0.9048 43 1 3.8095 -5.4527 0.0373 44 1 3.6270 -3.2584 1.2038 45 1 2.2775 -4.0037 2.0934 46 1 2.1320 -1.5224 2.1392 47 1 0.7509 -2.2362 1.2717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414381093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:05 Heat of formation + Delta-G solvation = 7.140000 kcal Electronic energy + Delta-G solvation = -26408.551912 eV Core-core repulsion = 22784.234557 eV Total energy + Delta-G solvation = -3624.317355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.40552 -38.99206 -37.40090 -35.58745 -34.43709 -33.07927 -31.92140 -31.11323 -29.51355 -28.72527 -27.27305 -26.30145 -24.75396 -23.39477 -22.87640 -21.42215 -20.76068 -19.83699 -19.16137 -17.91188 -17.23642 -16.69812 -15.91219 -15.57277 -15.29858 -15.17768 -15.04127 -14.83406 -13.95882 -13.78005 -13.74682 -13.38060 -13.34077 -12.82655 -12.69302 -12.67402 -12.63647 -12.34067 -12.02521 -11.91767 -11.66851 -11.41616 -11.38357 -11.28113 -11.10679 -10.98850 -10.78979 -10.67506 -10.61949 -10.01834 -9.48318 -9.40716 -9.17151 -8.83117 -8.64082 -8.50498 -7.48641 -6.78006 -6.56353 -4.28456 2.69150 2.91071 3.12126 3.12467 3.16823 3.21191 3.63945 3.70007 4.02060 4.32782 4.59986 4.63642 4.75883 4.81322 4.88355 5.00534 5.08626 5.16762 5.23911 5.28227 5.38472 5.39588 5.49861 5.54974 5.58366 5.61172 5.69979 5.75169 5.84042 6.00764 6.12728 6.24044 6.48514 6.55469 6.75747 6.77631 6.82403 6.95444 7.09804 7.19560 7.31271 7.42996 7.70693 7.91062 8.00635 8.14244 8.36332 8.47930 8.69284 8.97566 8.98649 9.13961 10.34909 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.002378 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.603802 B =11771.111009 C =11966.336932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.633 5.633 3 C 0.697 3.303 4 O -0.578 6.578 5 N -0.666 5.666 6 C 0.024 3.976 7 C -0.124 4.124 8 C -0.140 4.140 9 C 0.097 3.903 10 C -0.461 4.461 11 H 0.075 0.925 12 C 0.069 3.931 13 N -0.814 5.814 14 Si 0.914 3.086 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.204 4.204 19 C -0.087 4.087 20 C 0.158 3.842 21 C -0.124 4.124 22 C 0.058 3.942 23 N -0.545 5.545 24 C 0.025 3.975 25 C 0.059 3.941 26 C -0.126 4.126 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.277 0.723 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -19.837 -3.187 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.370 5.370 3 C 0.400 3.600 4 O -0.455 6.455 5 N -0.313 5.313 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.160 4.160 9 C 0.095 3.905 10 C -0.493 4.493 11 H 0.093 0.907 12 C -0.146 4.146 13 N -0.442 5.442 14 Si 0.740 3.260 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.224 4.224 19 C -0.107 4.107 20 C 0.053 3.947 21 C -0.163 4.163 22 C -0.070 4.070 23 N -0.270 5.270 24 C -0.123 4.123 25 C -0.070 4.070 26 C -0.165 4.165 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.800 -19.789 -2.932 21.129 hybrid contribution 0.731 0.669 0.285 1.031 sum -6.069 -19.120 -2.647 20.234 Atomic orbital electron populations 1.21668 0.80539 1.02887 1.01444 1.47048 1.05953 1.04657 1.79374 1.15965 0.85478 0.80283 0.78309 1.90884 1.11510 1.85610 1.57482 1.42269 1.09082 1.03749 1.76224 1.17098 0.96791 0.84866 1.08136 1.20287 0.99524 0.94459 1.00150 1.21173 0.94755 0.96795 1.03299 1.17713 0.90643 0.92216 0.89966 1.19467 1.25863 1.03494 1.00437 0.90706 1.25861 0.94891 0.98380 0.95420 1.69769 1.31881 1.36911 1.05609 0.86212 0.80633 0.81140 0.78055 1.19591 1.20368 1.18780 1.20804 0.99811 0.93316 1.08449 1.20418 0.94324 0.97055 0.98870 1.20901 0.98116 0.81637 0.94013 1.21952 1.01481 0.94559 0.98329 1.22060 0.97787 0.94503 0.92677 1.61971 1.59873 1.02722 1.02391 1.22345 0.97259 0.90017 1.02716 1.22056 0.97767 0.94430 0.92735 1.21963 1.01487 0.94629 0.98399 0.92947 0.90814 0.91544 0.77355 0.89231 0.85054 0.91252 0.88675 0.87409 0.88236 0.90843 0.91036 0.94526 0.90485 0.91359 0.91390 0.95625 0.94482 0.90452 0.90918 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.17 59.85 0.55 1.30 16 2 N -0.63 -8.61 2.77 -179.52 -0.50 -9.11 16 3 C 0.70 12.95 8.11 -86.92 -0.71 12.25 16 4 O -0.58 -13.14 13.09 5.30 0.07 -13.07 16 5 N -0.67 -12.27 5.14 -14.10 -0.07 -12.34 16 6 C 0.02 0.54 6.30 -83.57 -0.53 0.02 16 7 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 8 C -0.14 -3.66 8.62 -39.25 -0.34 -4.00 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 10 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16 11 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 12 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 13 N -0.81 -21.53 10.60 55.54 0.59 -20.94 16 14 Si 0.91 19.34 29.56 -169.99 -5.03 14.32 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 18 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 19 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 20 C 0.16 1.93 2.59 -67.81 -0.18 1.76 16 21 C -0.12 -1.25 5.41 -26.65 -0.14 -1.39 16 22 C 0.06 0.52 5.46 -3.84 -0.02 0.50 16 23 N -0.54 -4.85 4.91 -242.96 -1.19 -6.04 16 24 C 0.02 0.18 9.59 60.07 0.58 0.75 16 25 C 0.06 0.54 5.46 -3.84 -0.02 0.52 16 26 C -0.13 -1.30 5.40 -26.65 -0.14 -1.44 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.59 6.39 -51.93 -0.33 0.26 16 29 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 30 H 0.39 5.77 6.61 -40.82 -0.27 5.50 16 31 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.13 3.54 6.13 -52.49 -0.32 3.21 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 35 H 0.11 2.66 6.22 -52.49 -0.33 2.33 16 36 H 0.10 1.51 6.90 -51.93 -0.36 1.15 16 37 H 0.07 0.69 7.59 -51.93 -0.39 0.30 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.70 6.58 -51.93 -0.34 0.36 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -31.28 368.17 -10.97 -42.25 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.29 Total: 9.69 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.10 Total: -10.30 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -1.17 Total: -48.43 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.28 -10.97 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414381093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.390 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds