Wall clock time and date at job start Tue Mar 31 2020 11:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 120.00179 * 2 1 4 4 O 1.21576 * 120.00003 * 180.02562 * 3 2 1 5 5 N 1.34775 * 119.99752 * 0.02562 * 3 2 1 6 6 C 1.39238 * 119.99983 * 175.70736 * 5 3 2 7 7 C 1.39475 * 119.83527 * 215.08712 * 6 5 3 8 8 C 1.36383 * 120.17062 * 179.71701 * 7 6 5 9 9 C 1.40871 * 119.82275 * 0.55449 * 8 7 6 10 10 C 1.41156 * 120.15914 * 179.69932 * 9 8 7 11 11 H 1.07998 * 120.00062 * 214.75365 * 10 9 8 12 12 C 1.39886 * 120.00240 * 34.75389 * 10 9 8 13 13 N 1.30880 * 120.00168 * 355.69071 * 12 10 9 14 14 Si 1.86802 * 120.00209 * 175.68998 * 12 10 9 15 15 H 1.48503 * 109.46978 * 89.99984 * 14 12 10 16 16 H 1.48499 * 109.47346 * 209.99924 * 14 12 10 17 17 H 1.48496 * 109.47168 * 330.00302 * 14 12 10 18 18 C 1.40861 * 119.67367 * 359.72239 * 9 8 7 19 19 C 1.36367 * 119.83254 * 359.97438 * 18 9 8 20 20 C 1.46495 * 119.99848 * 180.02562 * 2 1 3 21 21 C 1.53122 * 109.52613 * 59.68101 * 20 2 1 22 22 C 1.53035 * 109.28182 * 182.44017 * 21 20 2 23 23 N 1.46847 * 109.52154 * 59.17859 * 22 21 20 24 24 C 1.46904 * 110.99812 * 174.15905 * 23 22 21 25 25 C 1.46846 * 111.19806 * 298.25773 * 23 22 21 26 26 C 1.53034 * 109.52462 * 61.74503 * 25 23 22 27 27 H 1.08997 * 109.47112 * 89.99494 * 1 2 3 28 28 H 1.09005 * 109.47150 * 210.00431 * 1 2 3 29 29 H 1.09006 * 109.46962 * 329.99958 * 1 2 3 30 30 H 0.97000 * 120.00232 * 355.42724 * 5 3 2 31 31 H 1.08004 * 119.91926 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.09033 * 180.27405 * 8 7 6 33 33 H 0.97007 * 120.00576 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.08609 * 179.97438 * 18 9 8 35 35 H 1.08001 * 119.91831 * 179.97438 * 19 18 9 36 36 H 1.08999 * 109.52334 * 179.86914 * 20 2 1 37 37 H 1.09002 * 109.50142 * 302.38200 * 21 20 2 38 38 H 1.08996 * 109.50118 * 62.49566 * 21 20 2 39 39 H 1.08996 * 109.46378 * 299.16494 * 22 21 20 40 40 H 1.08994 * 109.46312 * 179.19345 * 22 21 20 41 41 H 1.09005 * 109.46677 * 184.20823 * 24 23 22 42 42 H 1.08992 * 109.47282 * 304.21122 * 24 23 22 43 43 H 1.09006 * 109.46605 * 64.21545 * 24 23 22 44 44 H 1.08999 * 109.46398 * 301.72642 * 25 23 22 45 45 H 1.09006 * 109.45137 * 181.75214 * 25 23 22 46 46 H 1.08999 * 109.50623 * 180.87586 * 26 25 23 47 47 H 1.09004 * 109.53419 * 60.77658 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1584 3.5385 0.0908 7 6 1.6028 4.6081 0.7927 8 6 2.2785 5.7888 0.8903 9 6 3.5354 5.9300 0.2700 10 6 4.2380 7.1509 0.3611 11 1 4.8387 7.4915 -0.4692 12 6 4.1564 7.9196 1.5270 13 7 3.3630 7.5502 2.5002 14 14 5.1797 9.4734 1.6950 15 1 4.4099 10.6317 1.1743 16 1 5.5060 9.6989 3.1260 17 1 6.4364 9.3248 0.9181 18 6 4.0873 4.8471 -0.4420 19 6 3.4026 3.6708 -0.5257 20 6 2.1975 -1.2687 -0.0006 21 6 1.8224 -2.0756 -1.2467 22 6 2.5436 -3.4249 -1.2110 23 7 2.1568 -4.1561 0.0023 24 6 2.7216 -5.5123 0.0022 25 6 2.5495 -3.4225 1.2123 26 6 1.8285 -2.0732 1.2489 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 0.4974 2.3358 -0.0661 31 1 0.6370 4.4999 1.2637 32 1 1.8491 6.6147 1.4379 33 1 3.3066 8.0830 3.3089 34 1 5.0503 4.9482 -0.9205 35 1 3.8243 2.8397 -1.0716 36 1 3.2693 -1.0705 -0.0028 37 1 0.7449 -2.2393 -1.2636 38 1 2.1217 -1.5265 -2.1394 39 1 3.6212 -3.2608 -1.2081 40 1 2.2675 -4.0076 -2.0897 41 1 2.3592 -6.0568 0.8742 42 1 2.4153 -6.0333 -0.9048 43 1 3.8095 -5.4527 0.0373 44 1 3.6270 -3.2584 1.2038 45 1 2.2775 -4.0037 2.0934 46 1 2.1320 -1.5224 2.1392 47 1 0.7509 -2.2362 1.2717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414381093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:03 Heat of formation + Delta-G solvation = -11.921469 kcal Electronic energy + Delta-G solvation = -26409.378479 eV Core-core repulsion = 22784.234557 eV Total energy + Delta-G solvation = -3625.143923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.74005 -40.10212 -39.06735 -36.77343 -36.17136 -34.78558 -33.01856 -31.89301 -31.45381 -30.58047 -28.11966 -27.43371 -26.35282 -24.17910 -23.98923 -23.15537 -22.47842 -21.09293 -20.31102 -19.37759 -19.13230 -18.07028 -17.18559 -16.85723 -16.71486 -16.37868 -16.05853 -15.72206 -15.57628 -15.18157 -14.91434 -14.56611 -14.54119 -14.24968 -14.08178 -13.93472 -13.59669 -13.42724 -13.40381 -13.25629 -13.05027 -12.84166 -12.77245 -12.54591 -12.45196 -12.20391 -12.18025 -11.79169 -11.63831 -11.53300 -11.39364 -11.22581 -10.96542 -10.63654 -9.65038 -9.45456 -9.34528 -8.67667 -8.48761 -6.31141 0.84999 1.15067 1.39736 1.46957 1.54274 1.66156 2.17100 2.25363 2.81985 2.95345 3.05707 3.68317 3.71632 3.83133 4.01256 4.14662 4.20674 4.33446 4.39269 4.43594 4.51144 4.55084 4.57542 4.62933 4.64832 4.72645 4.85430 4.85970 4.92164 4.97502 5.00899 5.04912 5.13391 5.15537 5.16272 5.24936 5.34006 5.44948 5.57988 5.69863 5.83436 6.04718 6.05765 6.07377 6.11284 6.20752 6.40878 6.69400 6.97970 7.01560 7.03104 7.62434 8.44014 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.002378 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.603802 B =11771.111009 C =11966.336932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.621 5.621 3 C 0.692 3.308 4 O -0.626 6.626 5 N -0.658 5.658 6 C 0.041 3.959 7 C -0.120 4.120 8 C -0.157 4.157 9 C 0.065 3.935 10 C -0.498 4.498 11 H 0.072 0.928 12 C 0.027 3.973 13 N -0.842 5.842 14 Si 0.989 3.011 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.264 1.264 18 C -0.220 4.220 19 C -0.098 4.098 20 C 0.154 3.846 21 C -0.114 4.114 22 C 0.060 3.940 23 N -0.547 5.547 24 C 0.024 3.976 25 C 0.060 3.940 26 C -0.117 4.117 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.413 0.587 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.284 0.716 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -21.391 -2.919 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.357 5.357 3 C 0.394 3.606 4 O -0.507 6.507 5 N -0.307 5.307 6 C -0.054 4.054 7 C -0.140 4.140 8 C -0.177 4.177 9 C 0.063 3.937 10 C -0.529 4.529 11 H 0.090 0.910 12 C -0.185 4.185 13 N -0.470 5.470 14 Si 0.810 3.190 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.188 1.188 18 C -0.240 4.240 19 C -0.118 4.118 20 C 0.050 3.950 21 C -0.153 4.153 22 C -0.069 4.069 23 N -0.271 5.271 24 C -0.124 4.124 25 C -0.068 4.068 26 C -0.156 4.156 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.251 0.749 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.864 -21.411 -2.676 23.328 hybrid contribution 1.270 0.945 0.176 1.592 sum -7.594 -20.467 -2.500 21.973 Atomic orbital electron populations 1.22004 0.77490 1.04530 1.03231 1.47093 1.07754 1.03325 1.77550 1.16182 0.85036 0.81356 0.78034 1.90857 1.13910 1.86470 1.59487 1.42042 1.09962 1.02452 1.76262 1.17119 0.96000 0.86260 1.05974 1.20522 1.00609 0.93397 0.99488 1.21166 0.94837 0.97755 1.03919 1.18028 0.91621 0.92921 0.91152 1.19692 1.27146 1.04567 1.01457 0.91027 1.26735 0.95829 1.01451 0.94490 1.69829 1.32853 1.38237 1.06119 0.85103 0.78728 0.76921 0.78290 1.18333 1.19413 1.18791 1.20915 1.00218 0.93835 1.08988 1.20500 0.95410 0.96387 0.99505 1.21016 0.96102 0.81488 0.96427 1.21860 1.02476 0.94520 0.96451 1.22061 0.96911 0.94251 0.93662 1.62014 1.59884 1.03351 1.01887 1.22418 0.97072 0.89048 1.03885 1.22044 0.96837 0.94146 0.93786 1.21882 1.02543 0.94638 0.96507 0.91029 0.88363 0.90798 0.74880 0.85738 0.86175 0.90516 0.88759 0.87792 0.91980 0.89178 0.92053 0.95838 0.88688 0.90278 0.90214 0.95965 0.95859 0.88796 0.92327 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.17 127.77 1.17 2.27 16 2 N -0.62 -15.98 2.77 -840.16 -2.33 -18.31 16 3 C 0.69 25.41 8.11 179.05 1.45 26.86 16 4 O -0.63 -29.29 13.09 -3.95 -0.05 -29.34 16 5 N -0.66 -23.38 5.14 -316.79 -1.63 -25.01 16 6 C 0.04 1.85 6.30 38.57 0.24 2.09 16 7 C -0.12 -5.51 9.90 22.14 0.22 -5.29 16 8 C -0.16 -8.36 8.62 22.48 0.19 -8.16 16 9 C 0.07 3.70 5.55 -21.28 -0.12 3.58 16 10 C -0.50 -28.01 9.02 23.39 0.21 -27.79 16 11 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 12 C 0.03 1.39 5.42 85.23 0.46 1.85 16 13 N -0.84 -45.26 10.60 21.82 0.23 -45.03 16 14 Si 0.99 39.95 29.56 68.60 2.03 41.98 16 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 16 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 C -0.22 -11.89 9.74 22.48 0.22 -11.68 16 19 C -0.10 -4.96 8.61 22.13 0.19 -4.77 16 20 C 0.15 3.65 2.59 45.07 0.12 3.77 16 21 C -0.11 -2.10 5.41 30.65 0.17 -1.94 16 22 C 0.06 0.98 5.46 86.32 0.47 1.45 16 23 N -0.55 -8.47 4.91 -922.59 -4.53 -13.00 16 24 C 0.02 0.28 9.59 127.69 1.22 1.50 16 25 C 0.06 1.02 5.46 86.32 0.47 1.49 16 26 C -0.12 -2.22 5.40 30.65 0.17 -2.06 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.13 6.39 -2.38 -0.02 1.12 16 29 H 0.07 1.09 6.43 -2.38 -0.02 1.08 16 30 H 0.41 11.06 6.61 -92.71 -0.61 10.45 16 31 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.12 6.63 6.13 -2.91 -0.02 6.61 16 33 H 0.28 13.85 8.30 -92.70 -0.77 13.09 16 34 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 35 H 0.10 5.32 6.22 -2.91 -0.02 5.31 16 36 H 0.06 1.97 6.90 -2.39 -0.02 1.95 16 37 H 0.09 1.38 7.59 -2.39 -0.02 1.36 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 41 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 43 H 0.02 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.09 1.29 8.12 -2.38 -0.02 1.27 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.43 6.58 -2.39 -0.02 1.41 16 Total: -1.00 -70.79 368.17 0.94 -69.85 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.36 Total: 35.67 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 6.86 Total: -16.83 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -8.25 Total: -101.34 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -70.79 0.94 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414381093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.929 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds