Wall clock time and date at job start Tue Mar 31 2020 11:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00144 * 2 1 4 4 O 1.21588 * 119.99990 * 180.27512 * 3 2 1 5 5 N 1.34780 * 120.00002 * 0.27671 * 3 2 1 6 6 C 1.39954 * 120.00021 * 174.85926 * 5 3 2 7 7 C 1.39284 * 119.95031 * 145.75779 * 6 5 3 8 8 C 1.38488 * 120.43591 * 180.02562 * 7 6 5 9 9 C 1.37683 * 120.31821 * 359.97428 * 8 7 6 10 10 C 1.40741 * 119.88445 * 0.02562 * 9 8 7 11 11 C 1.41408 * 120.20960 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99711 * 205.17981 * 11 10 9 13 13 C 1.39935 * 120.00102 * 25.18071 * 11 10 9 14 14 N 1.30826 * 119.99680 * 16.78350 * 13 11 10 15 15 Si 1.86794 * 119.99802 * 196.78681 * 13 11 10 16 16 H 1.48499 * 109.47541 * 94.96305 * 15 13 11 17 17 H 1.48503 * 109.47286 * 214.96337 * 15 13 11 18 18 H 1.48504 * 109.47214 * 334.96167 * 15 13 11 19 19 C 1.38239 * 119.94699 * 325.48647 * 6 5 3 20 20 C 1.46499 * 119.99897 * 180.27395 * 2 1 3 21 21 C 1.53130 * 109.52043 * 59.40677 * 20 2 1 22 22 C 1.53035 * 109.27860 * 182.44025 * 21 20 2 23 23 N 1.46846 * 109.52469 * 59.18008 * 22 21 20 24 24 C 1.46896 * 111.00172 * 174.16474 * 23 22 21 25 25 C 1.46855 * 111.19613 * 298.25829 * 23 22 21 26 26 C 1.53035 * 109.52264 * 61.74522 * 25 23 22 27 27 H 1.09006 * 109.46597 * 269.72177 * 1 2 3 28 28 H 1.08996 * 109.46864 * 29.71849 * 1 2 3 29 29 H 1.08999 * 109.47226 * 149.72505 * 1 2 3 30 30 H 0.96995 * 119.99921 * 354.86684 * 5 3 2 31 31 H 1.08004 * 119.78229 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.84147 * 180.02562 * 8 7 6 33 33 H 1.07996 * 120.05692 * 179.97438 * 9 8 7 34 34 H 0.97000 * 119.99402 * 180.02562 * 14 13 11 35 35 H 1.08006 * 120.16276 * 0.02562 * 19 6 5 36 36 H 1.09003 * 109.52625 * 179.59714 * 20 2 1 37 37 H 1.08996 * 109.50112 * 302.38311 * 21 20 2 38 38 H 1.08998 * 109.49930 * 62.49924 * 21 20 2 39 39 H 1.09004 * 109.46054 * 299.16688 * 22 21 20 40 40 H 1.09000 * 109.46567 * 179.19704 * 22 21 20 41 41 H 1.09007 * 109.47523 * 184.21406 * 24 23 22 42 42 H 1.09005 * 109.46879 * 304.20911 * 24 23 22 43 43 H 1.08999 * 109.47935 * 64.20821 * 24 23 22 44 44 H 1.08992 * 109.46196 * 301.72137 * 25 23 22 45 45 H 1.09002 * 109.45048 * 181.75171 * 25 23 22 46 46 H 1.09000 * 109.49975 * 180.88189 * 26 25 23 47 47 H 1.08999 * 109.53991 * 60.77474 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1671 -0.0051 5 7 1.4651 2.3344 0.0056 6 6 2.1611 3.5437 0.1142 7 6 1.6944 4.6765 -0.5482 8 6 2.3755 5.8782 -0.4481 9 6 3.5223 5.9661 0.3086 10 6 4.0060 4.8298 0.9836 11 6 5.1835 4.9122 1.7622 12 1 5.7769 4.0272 1.9391 13 6 5.5799 6.1402 2.3036 14 7 4.7255 7.1280 2.3790 15 14 7.3289 6.3689 2.9183 16 1 8.1554 6.9769 1.8448 17 1 7.3238 7.2619 4.1048 18 1 7.8980 5.0497 3.2941 19 6 3.3077 3.6133 0.8834 20 6 2.1975 -1.2687 -0.0061 21 6 1.8172 -2.0732 -1.2523 22 6 2.5385 -3.4225 -1.2223 23 7 2.1568 -4.1562 -0.0089 24 6 2.7216 -5.5122 -0.0139 25 6 2.5545 -3.4250 1.2010 26 6 1.8336 -2.0757 1.2433 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 0.4977 2.3362 -0.0655 31 1 0.7953 4.6175 -1.1438 32 1 2.0048 6.7507 -0.9654 33 1 4.0504 6.9052 0.3834 34 1 5.0004 7.9794 2.7539 35 1 3.6682 2.7364 1.4006 36 1 3.2694 -1.0706 -0.0123 37 1 0.7397 -2.2367 -1.2650 38 1 2.1128 -1.5223 -2.1452 39 1 3.6161 -3.2583 -1.2235 40 1 2.2588 -4.0035 -2.1011 41 1 2.3628 -6.0586 0.8584 42 1 2.4115 -6.0316 -0.9207 43 1 3.8096 -5.4529 0.0167 44 1 3.6320 -3.2609 1.1884 45 1 2.2862 -4.0079 2.0821 46 1 2.1410 -1.5267 2.1334 47 1 0.7562 -2.2388 1.2702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434725107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:09 Heat of formation + Delta-G solvation = -15.066918 kcal Electronic energy + Delta-G solvation = -26623.124855 eV Core-core repulsion = 22997.844536 eV Total energy + Delta-G solvation = -3625.280320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77302 -40.08723 -39.00205 -36.77337 -36.23774 -34.91666 -33.04961 -31.90746 -31.74669 -29.78540 -28.14335 -27.29642 -26.92838 -24.19538 -24.15200 -22.92292 -22.60845 -21.09842 -20.33528 -19.75523 -18.86467 -17.69442 -17.30155 -16.73282 -16.65254 -16.42297 -16.16493 -16.05625 -15.59322 -15.21979 -14.91231 -14.73290 -14.60414 -14.28884 -14.14177 -13.87529 -13.57751 -13.42535 -13.38719 -13.14462 -13.02253 -12.92681 -12.75404 -12.55704 -12.23030 -12.19568 -12.17786 -11.93855 -11.65614 -11.55654 -11.53455 -11.22347 -10.96416 -10.77612 -9.68310 -9.39096 -9.35974 -8.72211 -8.58235 -6.37136 0.92275 1.02627 1.35097 1.48038 1.49165 1.59976 2.15195 2.20799 2.73908 2.93561 2.97471 3.68015 3.74505 3.81462 3.99595 4.13296 4.19036 4.31940 4.41028 4.47175 4.50967 4.56594 4.60975 4.62875 4.63965 4.71386 4.83529 4.84752 4.95240 4.98209 5.04053 5.04899 5.09868 5.12486 5.14281 5.14663 5.28325 5.32600 5.54387 5.75606 5.82683 6.02230 6.04170 6.07662 6.10706 6.14347 6.36989 6.68827 6.94028 6.95725 7.02193 7.56445 8.33372 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.002959 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.833059 B = 9461.676971 C =10640.129906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.620 5.620 3 C 0.693 3.307 4 O -0.621 6.621 5 N -0.669 5.669 6 C 0.176 3.824 7 C -0.251 4.251 8 C -0.089 4.089 9 C -0.199 4.199 10 C 0.090 3.910 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.038 3.962 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.259 1.259 17 H -0.260 1.260 18 H -0.267 1.267 19 C -0.236 4.236 20 C 0.152 3.848 21 C -0.115 4.115 22 C 0.059 3.941 23 N -0.545 5.545 24 C 0.023 3.977 25 C 0.060 3.940 26 C -0.115 4.115 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.416 0.584 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.290 0.710 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -19.263 -4.712 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.356 5.356 3 C 0.395 3.605 4 O -0.501 6.501 5 N -0.319 5.319 6 C 0.082 3.918 7 C -0.273 4.273 8 C -0.108 4.108 9 C -0.219 4.219 10 C 0.087 3.913 11 C -0.533 4.533 12 H 0.078 0.922 13 C -0.177 4.177 14 N -0.447 5.447 15 Si 0.802 3.198 16 H -0.184 1.184 17 H -0.184 1.184 18 H -0.191 1.191 19 C -0.259 4.259 20 C 0.049 3.951 21 C -0.154 4.154 22 C -0.069 4.069 23 N -0.270 5.270 24 C -0.124 4.124 25 C -0.068 4.068 26 C -0.154 4.154 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.255 0.745 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.413 -19.129 -4.606 22.262 hybrid contribution 1.522 0.464 0.464 1.658 sum -8.891 -18.665 -4.142 21.085 Atomic orbital electron populations 1.22027 0.77273 1.04728 1.03202 1.47116 1.07876 1.03218 1.77367 1.16179 0.85007 0.81436 0.77831 1.90929 1.14031 1.86479 1.58664 1.42506 1.10269 1.02813 1.76342 1.17315 0.93635 0.84768 0.96060 1.20433 1.05414 0.92473 1.08963 1.20830 0.94941 0.97022 0.97979 1.21300 0.99665 0.99068 1.01896 1.17828 0.91979 0.91372 0.90113 1.19724 1.08047 0.95529 1.29992 0.92244 1.26684 1.02938 0.94317 0.93719 1.69858 1.36408 1.04211 1.34243 0.85214 0.76811 0.79057 0.78702 1.18358 1.18424 1.19090 1.20921 0.99748 0.97922 1.07259 1.21041 0.96011 0.81472 0.96625 1.21880 1.02641 0.94540 0.96301 1.22069 0.96904 0.94220 0.93720 1.62023 1.59815 1.03351 1.01826 1.22423 0.97051 0.89025 1.03947 1.22045 0.96732 0.94177 0.93890 1.21859 1.02585 0.94572 0.96394 0.91426 0.90463 0.87947 0.74492 0.85019 0.85680 0.87692 0.89974 0.90288 0.92261 0.88771 0.91917 0.95976 0.88441 0.90264 0.90081 0.96030 0.96004 0.88761 0.92628 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 9.28 127.77 1.19 2.33 16 2 N -0.62 -16.84 2.77 -840.13 -2.33 -19.17 16 3 C 0.69 27.00 8.01 179.06 1.43 28.44 16 4 O -0.62 -31.33 13.43 -3.99 -0.05 -31.38 16 5 N -0.67 -24.78 5.22 -317.33 -1.66 -26.43 16 6 C 0.18 8.30 6.25 38.10 0.24 8.53 16 7 C -0.25 -10.86 9.97 22.58 0.23 -10.64 16 8 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 9 C -0.20 -11.00 8.69 22.75 0.20 -10.81 16 10 C 0.09 5.35 5.57 -21.31 -0.12 5.23 16 11 C -0.50 -30.16 9.05 23.46 0.21 -29.94 16 12 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 13 C 0.04 2.06 5.16 85.25 0.44 2.50 16 14 N -0.82 -44.66 10.94 21.82 0.24 -44.42 16 15 Si 0.98 41.09 29.59 68.60 2.03 43.12 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 C -0.24 -13.37 8.39 22.85 0.19 -13.18 16 20 C 0.15 3.87 2.59 45.08 0.12 3.98 16 21 C -0.11 -2.19 5.39 30.65 0.17 -2.03 16 22 C 0.06 1.02 5.46 86.33 0.47 1.49 16 23 N -0.55 -8.94 4.91 -922.57 -4.53 -13.47 16 24 C 0.02 0.29 9.59 127.69 1.22 1.52 16 25 C 0.06 1.10 5.46 86.32 0.47 1.57 16 26 C -0.12 -2.38 5.42 30.65 0.17 -2.22 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.08 1.11 6.29 -2.39 -0.02 1.09 16 29 H 0.10 1.17 6.36 -2.39 -0.02 1.15 16 30 H 0.42 11.36 6.51 -92.71 -0.60 10.75 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 34 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 35 H 0.08 4.79 6.48 -2.91 -0.02 4.77 16 36 H 0.06 2.01 6.90 -2.39 -0.02 2.00 16 37 H 0.09 1.44 6.56 -2.39 -0.02 1.42 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 41 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 0.81 8.09 -2.38 -0.02 0.80 16 43 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.09 1.57 7.61 -2.39 -0.02 1.56 16 Total: -1.00 -75.37 368.95 0.91 -74.45 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.37 Total: 34.45 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 6.84 Total: -17.15 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -8.27 Total: -103.49 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.05 Total: -31.38 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -75.37 0.91 -74.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434725107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.384 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds