Wall clock time and date at job start Tue Mar 31 2020 11:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00080 * 2 1 4 4 C 1.46898 * 111.00012 * 123.95876 * 2 1 3 5 5 C 1.53044 * 109.45677 * 175.00077 * 4 2 1 6 6 C 1.53194 * 109.30918 * 181.36920 * 5 4 2 7 7 N 1.46922 * 108.77914 * 305.36486 * 6 5 4 8 8 C 1.34780 * 120.63331 * 233.58854 * 7 6 5 9 9 O 1.21585 * 119.99831 * 355.23460 * 8 7 6 10 10 N 1.34779 * 120.00163 * 175.23152 * 8 7 6 11 11 C 1.39953 * 119.99663 * 187.17581 * 10 8 7 12 12 C 1.39281 * 119.95216 * 33.44260 * 11 10 8 13 13 C 1.38484 * 120.43466 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.31787 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88321 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.21100 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99777 * 30.07569 * 16 15 14 18 18 C 1.39926 * 120.00346 * 210.07904 * 16 15 14 19 19 N 1.30829 * 119.99690 * 11.46120 * 18 16 15 20 20 Si 1.86802 * 120.00051 * 191.46610 * 18 16 15 21 21 H 1.48494 * 109.47413 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47110 * 120.00003 * 20 18 16 23 23 H 1.48506 * 109.46858 * 239.99709 * 20 18 16 24 24 C 1.38243 * 119.94374 * 213.42077 * 11 10 8 25 25 C 1.46925 * 118.73747 * 53.85612 * 7 6 5 26 26 C 1.53039 * 109.44585 * 295.05883 * 4 2 1 27 27 H 1.08996 * 109.47052 * 296.04173 * 1 2 3 28 28 H 1.09003 * 109.47277 * 56.04318 * 1 2 3 29 29 H 1.09001 * 109.46987 * 176.04354 * 1 2 3 30 30 H 1.08998 * 109.47838 * 183.95497 * 3 2 1 31 31 H 1.08999 * 109.47654 * 303.96189 * 3 2 1 32 32 H 1.09006 * 109.47072 * 63.95401 * 3 2 1 33 33 H 1.08993 * 109.46234 * 55.02648 * 4 2 1 34 34 H 1.09002 * 109.50052 * 61.42012 * 5 4 2 35 35 H 1.09001 * 109.52510 * 301.33630 * 5 4 2 36 36 H 1.09002 * 109.58827 * 185.57790 * 6 5 4 37 37 H 1.09002 * 109.70548 * 65.22350 * 6 5 4 38 38 H 0.96994 * 119.99611 * 7.17483 * 10 8 7 39 39 H 1.08002 * 119.78262 * 0.25265 * 12 11 10 40 40 H 1.08000 * 119.84382 * 180.02562 * 13 12 11 41 41 H 1.07997 * 120.05782 * 180.02562 * 14 13 12 42 42 H 0.97007 * 120.00090 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.15980 * 0.04091 * 24 11 10 44 44 H 1.09004 * 109.58733 * 65.93186 * 25 7 6 45 45 H 1.09002 * 109.58709 * 186.35553 * 25 7 6 46 46 H 1.09002 * 109.49878 * 298.57383 * 26 4 2 47 47 H 1.08999 * 109.50032 * 58.64483 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5202 -0.8484 1.0347 6 6 4.0627 -1.6768 2.2036 7 7 3.5732 -1.0968 3.4617 8 6 4.4332 -0.7617 4.4438 9 8 5.6163 -1.0177 4.3295 10 7 3.9818 -0.1428 5.5527 11 6 4.8888 0.3394 6.5033 12 6 6.1275 0.8294 6.0966 13 6 7.0323 1.3094 7.0287 14 6 6.7165 1.3078 8.3688 15 6 5.4686 0.8157 8.7946 16 6 5.1373 0.8103 10.1693 17 1 5.5471 1.5631 10.8265 18 6 4.2786 -0.1703 10.6782 19 7 3.9609 -1.2060 9.9448 20 14 3.5858 -0.0004 12.4047 21 1 4.0949 1.2507 13.0215 22 1 2.1029 0.0467 12.3406 23 1 4.0091 -1.1639 13.2246 24 6 4.5535 0.3289 7.8444 25 6 2.1279 -0.8945 3.6310 26 6 1.6074 -0.0698 2.4439 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9164 -0.8523 32 1 1.7044 1.8723 0.9233 33 1 1.5757 -1.7718 1.1234 34 1 3.9423 0.1558 1.0737 35 1 3.7968 -1.3231 0.0932 36 1 5.1525 -1.6561 2.1914 37 1 3.7158 -2.7065 2.1167 38 1 3.0283 -0.0315 5.6919 39 1 6.3822 0.8393 5.0472 40 1 7.9900 1.6876 6.7027 41 1 7.4252 1.6835 9.0920 42 1 3.3659 -1.8861 10.2977 43 1 3.5934 -0.0512 8.1608 44 1 1.6242 -1.8609 3.6569 45 1 1.9405 -0.3575 4.5609 46 1 2.0475 0.9271 2.4696 47 1 0.5221 0.0099 2.5053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476610816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:51 Heat of formation + Delta-G solvation = 10.645186 kcal Electronic energy + Delta-G solvation = -26848.429817 eV Core-core repulsion = 23224.264458 eV Total energy + Delta-G solvation = -3624.165359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52298 -39.00575 -37.34798 -35.74903 -34.32101 -33.28148 -31.61352 -31.06016 -29.48609 -28.27044 -27.87590 -25.72784 -25.18544 -23.60264 -23.00546 -21.22157 -21.04013 -19.93702 -19.10466 -18.06118 -17.35591 -16.13067 -15.97175 -15.52048 -15.25820 -15.03220 -14.83694 -14.65259 -14.46342 -14.33604 -13.94540 -13.42709 -13.23527 -12.91467 -12.74357 -12.52428 -12.47686 -12.24831 -12.24257 -12.01031 -11.72000 -11.53286 -11.33416 -11.22345 -11.05554 -10.99895 -10.70872 -10.60433 -10.43046 -9.95992 -9.86511 -9.48598 -9.28753 -8.91648 -8.63148 -8.49170 -7.29254 -6.87956 -6.63957 -4.35028 2.70883 2.87306 2.97465 3.09289 3.14874 3.24190 3.60490 3.75291 3.97500 4.18181 4.50552 4.54435 4.70930 4.74622 4.88553 4.95388 5.05266 5.10136 5.20500 5.25695 5.31010 5.40913 5.52198 5.53276 5.63277 5.68277 5.69526 5.71384 5.84718 5.88510 6.07588 6.26847 6.54220 6.68274 6.72218 6.73916 6.75115 6.86875 7.01899 7.10812 7.24361 7.37666 7.68185 7.84666 7.98909 8.07113 8.29175 8.44362 8.64551 8.93671 8.95183 9.08050 10.28767 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002987 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.622397 B = 9371.303570 C =10094.116175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.016 3.984 4 C 0.085 3.915 5 C -0.126 4.126 6 C 0.132 3.868 7 N -0.634 5.634 8 C 0.705 3.295 9 O -0.571 6.571 10 N -0.678 5.678 11 C 0.161 3.839 12 C -0.221 4.221 13 C -0.089 4.089 14 C -0.225 4.225 15 C 0.122 3.878 16 C -0.467 4.467 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.805 5.805 20 Si 0.908 3.092 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.178 4.178 25 C 0.117 3.883 26 C -0.169 4.169 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.277 0.723 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 0.644 -16.435 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.132 4.132 4 C -0.023 4.023 5 C -0.165 4.165 6 C 0.008 3.992 7 N -0.373 5.373 8 C 0.407 3.593 9 O -0.447 6.447 10 N -0.326 5.326 11 C 0.069 3.931 12 C -0.242 4.242 13 C -0.108 4.108 14 C -0.245 4.245 15 C 0.119 3.881 16 C -0.498 4.498 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.432 5.432 20 Si 0.733 3.267 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.200 4.200 25 C -0.008 4.008 26 C -0.209 4.209 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.044 0.013 -16.988 19.245 hybrid contribution -1.284 0.339 1.628 2.101 sum -10.329 0.352 -15.360 18.513 Atomic orbital electron populations 1.22413 0.87577 1.02223 1.00588 1.62279 1.07769 1.14110 1.42074 1.22480 1.01280 0.88934 1.00523 1.21736 0.95678 0.97529 0.87380 1.22026 0.94126 1.01601 0.98740 1.21393 1.01193 0.95544 0.81043 1.47300 1.05735 1.67852 1.16406 1.15845 0.84891 0.78432 0.80117 1.90919 1.14686 1.59372 1.79722 1.42784 1.09436 1.59950 1.20474 1.17437 0.90429 0.97780 0.87482 1.20321 0.95573 1.09938 0.98353 1.20425 0.97265 0.99635 0.93426 1.21081 0.97444 1.11541 0.94398 1.17355 0.89311 0.88414 0.93036 1.19523 1.24783 1.11703 0.93743 0.90442 1.25854 0.94631 0.94102 0.99598 1.69827 1.28326 1.07296 1.37704 0.86267 0.79042 0.79275 0.82106 1.18538 1.19955 1.20119 1.21006 1.01625 1.08643 0.88694 1.21588 0.81194 0.99830 0.98139 1.22695 1.01248 1.00737 0.96218 0.95205 0.91520 0.91400 0.90949 0.91650 0.95071 0.89746 0.91296 0.89927 0.88527 0.91866 0.76933 0.88085 0.89039 0.88829 0.91259 0.86231 0.91261 0.90318 0.90889 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.31 60.07 0.56 0.70 16 2 N -0.54 -4.63 5.01 -243.13 -1.22 -5.85 16 3 C 0.02 0.13 8.82 60.06 0.53 0.66 16 4 C 0.09 0.75 2.19 -67.67 -0.15 0.60 16 5 C -0.13 -1.23 5.11 -26.61 -0.14 -1.37 16 6 C 0.13 1.59 6.42 -3.71 -0.02 1.56 16 7 N -0.63 -8.97 2.97 -178.23 -0.53 -9.49 16 8 C 0.70 13.61 8.00 -86.91 -0.70 12.92 16 9 O -0.57 -13.27 13.55 5.29 0.07 -13.20 16 10 N -0.68 -13.40 5.25 -14.27 -0.07 -13.48 16 11 C 0.16 3.86 6.26 -83.76 -0.52 3.34 16 12 C -0.22 -5.38 8.65 -39.10 -0.34 -5.72 16 13 C -0.09 -2.11 10.02 -39.69 -0.40 -2.51 16 14 C -0.22 -5.67 9.79 -38.84 -0.38 -6.05 16 15 C 0.12 3.28 5.53 -106.85 -0.59 2.69 16 16 C -0.47 -12.43 9.05 -37.74 -0.34 -12.78 16 17 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 18 C 0.07 1.87 5.23 -17.35 -0.09 1.78 16 19 N -0.80 -21.02 10.97 55.55 0.61 -20.41 16 20 Si 0.91 18.79 29.57 -169.99 -5.03 13.77 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.18 -4.59 8.55 -38.69 -0.33 -4.92 16 25 C 0.12 1.26 6.46 -3.49 -0.02 1.23 16 26 C -0.17 -1.53 4.67 -26.39 -0.12 -1.66 16 27 H 0.03 0.21 6.40 -51.93 -0.33 -0.13 16 28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.03 0.27 6.31 -51.93 -0.33 -0.06 16 33 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.35 7.03 -51.93 -0.37 0.99 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.39 6.55 6.28 -40.82 -0.26 6.30 16 39 H 0.10 2.45 6.48 -52.49 -0.34 2.11 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 43 H 0.12 3.13 6.35 -52.49 -0.33 2.80 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.85 5.58 -51.93 -0.29 0.56 16 46 H 0.07 0.76 6.47 -51.93 -0.34 0.42 16 47 H 0.07 0.58 6.46 -51.93 -0.34 0.25 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -31.19 362.12 -10.70 -41.88 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.93 Total: 10.85 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.05 Total: -9.52 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.21 Total: -49.23 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.19 -10.70 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476610816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.528 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds