Wall clock time and date at job start Tue Mar 31 2020 11:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00080 * 2 1 4 4 C 1.46898 * 111.00012 * 123.95876 * 2 1 3 5 5 C 1.53044 * 109.45677 * 175.00077 * 4 2 1 6 6 C 1.53194 * 109.30918 * 181.36920 * 5 4 2 7 7 N 1.46922 * 108.77914 * 305.36486 * 6 5 4 8 8 C 1.34780 * 120.63331 * 233.58854 * 7 6 5 9 9 O 1.21585 * 119.99831 * 355.23460 * 8 7 6 10 10 N 1.34779 * 120.00163 * 175.23152 * 8 7 6 11 11 C 1.39953 * 119.99663 * 187.17581 * 10 8 7 12 12 C 1.39281 * 119.95216 * 33.44260 * 11 10 8 13 13 C 1.38484 * 120.43466 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.31787 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88321 * 0.02562 * 14 13 12 16 16 C 1.41410 * 120.21100 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99777 * 30.07569 * 16 15 14 18 18 C 1.39926 * 120.00346 * 210.07904 * 16 15 14 19 19 N 1.30829 * 119.99690 * 11.46120 * 18 16 15 20 20 Si 1.86802 * 120.00051 * 191.46610 * 18 16 15 21 21 H 1.48494 * 109.47413 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47110 * 120.00003 * 20 18 16 23 23 H 1.48506 * 109.46858 * 239.99709 * 20 18 16 24 24 C 1.38243 * 119.94374 * 213.42077 * 11 10 8 25 25 C 1.46925 * 118.73747 * 53.85612 * 7 6 5 26 26 C 1.53039 * 109.44585 * 295.05883 * 4 2 1 27 27 H 1.08996 * 109.47052 * 296.04173 * 1 2 3 28 28 H 1.09003 * 109.47277 * 56.04318 * 1 2 3 29 29 H 1.09001 * 109.46987 * 176.04354 * 1 2 3 30 30 H 1.08998 * 109.47838 * 183.95497 * 3 2 1 31 31 H 1.08999 * 109.47654 * 303.96189 * 3 2 1 32 32 H 1.09006 * 109.47072 * 63.95401 * 3 2 1 33 33 H 1.08993 * 109.46234 * 55.02648 * 4 2 1 34 34 H 1.09002 * 109.50052 * 61.42012 * 5 4 2 35 35 H 1.09001 * 109.52510 * 301.33630 * 5 4 2 36 36 H 1.09002 * 109.58827 * 185.57790 * 6 5 4 37 37 H 1.09002 * 109.70548 * 65.22350 * 6 5 4 38 38 H 0.96994 * 119.99611 * 7.17483 * 10 8 7 39 39 H 1.08002 * 119.78262 * 0.25265 * 12 11 10 40 40 H 1.08000 * 119.84382 * 180.02562 * 13 12 11 41 41 H 1.07997 * 120.05782 * 180.02562 * 14 13 12 42 42 H 0.97007 * 120.00090 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.15980 * 0.04091 * 24 11 10 44 44 H 1.09004 * 109.58733 * 65.93186 * 25 7 6 45 45 H 1.09002 * 109.58709 * 186.35553 * 25 7 6 46 46 H 1.09002 * 109.49878 * 298.57383 * 26 4 2 47 47 H 1.08999 * 109.50032 * 58.64483 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5202 -0.8484 1.0347 6 6 4.0627 -1.6768 2.2036 7 7 3.5732 -1.0968 3.4617 8 6 4.4332 -0.7617 4.4438 9 8 5.6163 -1.0177 4.3295 10 7 3.9818 -0.1428 5.5527 11 6 4.8888 0.3394 6.5033 12 6 6.1275 0.8294 6.0966 13 6 7.0323 1.3094 7.0287 14 6 6.7165 1.3078 8.3688 15 6 5.4686 0.8157 8.7946 16 6 5.1373 0.8103 10.1693 17 1 5.5471 1.5631 10.8265 18 6 4.2786 -0.1703 10.6782 19 7 3.9609 -1.2060 9.9448 20 14 3.5858 -0.0004 12.4047 21 1 4.0949 1.2507 13.0215 22 1 2.1029 0.0467 12.3406 23 1 4.0091 -1.1639 13.2246 24 6 4.5535 0.3289 7.8444 25 6 2.1279 -0.8945 3.6310 26 6 1.6074 -0.0698 2.4439 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9164 -0.8523 32 1 1.7044 1.8723 0.9233 33 1 1.5757 -1.7718 1.1234 34 1 3.9423 0.1558 1.0737 35 1 3.7968 -1.3231 0.0932 36 1 5.1525 -1.6561 2.1914 37 1 3.7158 -2.7065 2.1167 38 1 3.0283 -0.0315 5.6919 39 1 6.3822 0.8393 5.0472 40 1 7.9900 1.6876 6.7027 41 1 7.4252 1.6835 9.0920 42 1 3.3659 -1.8861 10.2977 43 1 3.5934 -0.0512 8.1608 44 1 1.6242 -1.8609 3.6569 45 1 1.9405 -0.3575 4.5609 46 1 2.0475 0.9271 2.4696 47 1 0.5221 0.0099 2.5053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476610816.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:50 Heat of formation + Delta-G solvation = -8.463626 kcal Electronic energy + Delta-G solvation = -26849.258437 eV Core-core repulsion = 23224.264458 eV Total energy + Delta-G solvation = -3624.993979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83273 -40.13175 -39.01470 -36.87245 -36.06103 -35.11064 -32.67408 -31.97262 -31.43362 -29.96557 -28.51824 -27.16787 -26.63804 -24.49138 -24.06494 -23.08447 -22.48851 -21.20837 -20.38363 -19.36645 -19.14929 -17.63284 -17.04309 -16.88344 -16.61572 -16.35258 -16.20121 -15.68652 -15.55692 -15.53512 -15.10134 -14.85109 -14.55019 -14.36076 -14.22436 -13.95437 -13.58908 -13.34357 -13.24585 -12.95942 -12.92936 -12.78960 -12.68307 -12.61221 -12.27497 -12.19449 -12.10628 -11.82777 -11.76445 -11.70989 -11.40743 -11.25852 -11.08902 -10.74547 -9.76139 -9.27443 -9.21765 -8.73504 -8.53135 -6.36655 0.87912 1.04796 1.40917 1.49567 1.55783 1.61316 2.12250 2.24270 2.79067 2.88382 2.99428 3.68641 3.71302 3.76425 3.93929 4.08232 4.22904 4.31397 4.37809 4.42459 4.44690 4.53024 4.65611 4.68212 4.72469 4.72989 4.78884 4.84778 4.89170 4.94018 5.02337 5.09377 5.10301 5.12777 5.15022 5.20445 5.28739 5.34230 5.55094 5.73330 5.82125 5.96059 6.06997 6.09697 6.11525 6.13278 6.38113 6.67710 6.90160 6.96351 7.01085 7.52063 8.40533 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002987 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.622397 B = 9371.303570 C =10094.116175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.546 5.546 3 C 0.017 3.983 4 C 0.089 3.911 5 C -0.116 4.116 6 C 0.129 3.871 7 N -0.623 5.623 8 C 0.700 3.300 9 O -0.616 6.616 10 N -0.675 5.675 11 C 0.167 3.833 12 C -0.233 4.233 13 C -0.086 4.086 14 C -0.243 4.243 15 C 0.094 3.906 16 C -0.498 4.498 17 H 0.077 0.923 18 C 0.033 3.967 19 N -0.835 5.835 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.270 1.270 24 C -0.196 4.196 25 C 0.111 3.889 26 C -0.159 4.159 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.408 0.592 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.285 0.715 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 0.263 -17.008 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.131 4.131 4 C -0.019 4.019 5 C -0.154 4.154 6 C 0.006 3.994 7 N -0.360 5.360 8 C 0.402 3.598 9 O -0.496 6.496 10 N -0.324 5.324 11 C 0.073 3.927 12 C -0.254 4.254 13 C -0.105 4.105 14 C -0.263 4.263 15 C 0.091 3.909 16 C -0.529 4.529 17 H 0.096 0.904 18 C -0.180 4.180 19 N -0.461 5.461 20 Si 0.806 3.194 21 H -0.182 1.182 22 H -0.187 1.187 23 H -0.195 1.195 24 C -0.218 4.218 25 C -0.012 4.012 26 C -0.199 4.199 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.088 -0.370 -17.620 20.822 hybrid contribution -0.677 0.425 1.669 1.851 sum -11.765 0.054 -15.951 19.820 Atomic orbital electron populations 1.22471 0.86383 1.02968 1.01037 1.62283 1.08867 1.14044 1.41676 1.22471 1.00873 0.89067 1.00734 1.21700 0.94710 0.98209 0.87318 1.21917 0.95012 1.00391 0.98098 1.21569 1.00031 0.97082 0.80727 1.47370 1.06719 1.66365 1.15576 1.16041 0.84928 0.78282 0.80566 1.90879 1.16879 1.61170 1.80656 1.42644 1.09686 1.59909 1.20143 1.17480 0.90912 0.96584 0.87742 1.20476 0.96094 1.10454 0.98419 1.20734 0.98284 0.98613 0.92865 1.21264 0.97426 1.12324 0.95299 1.17765 0.90238 0.89078 0.93832 1.19784 1.26450 1.12667 0.93950 0.90440 1.26727 0.94171 0.93134 1.03954 1.69890 1.28574 1.07897 1.39779 0.85113 0.78567 0.79263 0.76433 1.18211 1.18727 1.19548 1.20934 1.01408 1.10032 0.89401 1.21882 0.78953 1.01450 0.98954 1.22621 1.02210 0.99540 0.95531 0.94964 0.90850 0.90559 0.91759 0.90645 0.95550 0.88500 0.92745 0.88579 0.90973 0.89678 0.75263 0.88201 0.86196 0.87848 0.90445 0.87125 0.88950 0.90543 0.92348 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.31 127.69 1.19 1.40 16 2 N -0.55 -8.04 5.01 -923.13 -4.62 -12.66 16 3 C 0.02 0.25 8.82 127.69 1.13 1.38 16 4 C 0.09 1.35 2.19 44.94 0.10 1.45 16 5 C -0.12 -2.09 5.11 30.67 0.16 -1.93 16 6 C 0.13 2.97 6.42 86.36 0.55 3.53 16 7 N -0.62 -17.15 2.97 -836.05 -2.48 -19.63 16 8 C 0.70 27.27 8.00 179.05 1.43 28.71 16 9 O -0.62 -29.35 13.55 -3.98 -0.05 -29.41 16 10 N -0.67 -26.97 5.25 -317.32 -1.66 -28.64 16 11 C 0.17 8.18 6.26 38.10 0.24 8.42 16 12 C -0.23 -11.57 8.65 22.58 0.20 -11.37 16 13 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 14 C -0.24 -12.50 9.79 22.75 0.22 -12.28 16 15 C 0.09 5.18 5.53 -21.31 -0.12 5.06 16 16 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 17 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 18 C 0.03 1.69 5.23 85.25 0.45 2.14 16 19 N -0.83 -43.97 10.97 21.82 0.24 -43.73 16 20 Si 0.99 38.25 29.57 68.60 2.03 40.28 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 24 C -0.20 -10.39 8.55 22.85 0.20 -10.20 16 25 C 0.11 2.16 6.46 86.51 0.56 2.72 16 26 C -0.16 -2.53 4.67 30.82 0.14 -2.39 16 27 H 0.03 0.35 6.40 -2.39 -0.02 0.33 16 28 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.06 6.36 -2.39 -0.02 1.05 16 31 H 0.07 0.96 8.12 -2.39 -0.02 0.95 16 32 H 0.03 0.42 6.31 -2.38 -0.02 0.40 16 33 H 0.10 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.05 1.16 6.50 -2.39 -0.02 1.14 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 2.05 7.03 -2.39 -0.02 2.04 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 13.59 6.28 -92.71 -0.58 13.01 16 39 H 0.10 4.95 6.48 -2.91 -0.02 4.94 16 40 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 41 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.29 13.57 8.30 -92.70 -0.77 12.80 16 43 H 0.11 5.97 6.35 -2.91 -0.02 5.95 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.54 5.58 -2.39 -0.01 1.52 16 46 H 0.06 1.13 6.47 -2.39 -0.02 1.12 16 47 H 0.09 1.18 6.46 -2.39 -0.02 1.16 16 Total: -1.00 -68.68 362.12 0.73 -67.96 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: 0.40 Total: 39.98 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 6.87 Total: -14.14 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -8.53 Total: -104.66 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -68.68 0.73 -67.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476610816.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.492 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds