Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46507 * 119.99782 * 2 1 4 4 C 1.34775 * 120.00206 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99569 * 359.97438 * 4 2 1 6 6 C 1.50694 * 119.99884 * 179.97438 * 4 2 1 7 7 C 1.53004 * 109.46702 * 179.97438 * 6 4 2 8 8 C 1.53122 * 109.52089 * 184.99639 * 7 6 4 9 9 C 1.53045 * 109.27757 * 182.43963 * 8 7 6 10 10 N 1.46847 * 109.52035 * 59.18224 * 9 8 7 11 11 C 1.38824 * 110.99784 * 174.16179 * 10 9 8 12 12 C 1.39790 * 119.58637 * 203.52826 * 11 10 9 13 13 C 1.38601 * 119.49330 * 179.78616 * 12 11 10 14 14 C 1.38390 * 118.67758 * 0.48070 * 13 12 11 15 15 C 1.40550 * 119.14951 * 359.74407 * 14 13 12 16 16 C 1.41315 * 119.78522 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00025 * 332.41975 * 16 15 14 18 18 C 1.40024 * 120.00327 * 152.41361 * 16 15 14 19 19 N 1.30744 * 120.00308 * 170.44460 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 350.44089 * 18 16 15 21 21 H 1.48493 * 109.47192 * 86.47006 * 20 18 16 22 22 H 1.48501 * 109.46944 * 206.46804 * 20 18 16 23 23 H 1.48500 * 109.47475 * 326.46624 * 20 18 16 24 24 N 1.31962 * 119.58355 * 23.80023 * 11 10 9 25 25 C 1.46846 * 111.19722 * 298.25321 * 10 9 8 26 26 C 1.53041 * 109.52114 * 61.74653 * 25 10 9 27 27 H 1.08999 * 109.46550 * 269.99620 * 1 2 3 28 28 H 1.09001 * 109.47113 * 29.99730 * 1 2 3 29 29 H 1.08997 * 109.46863 * 150.00099 * 1 2 3 30 30 H 1.09000 * 109.47033 * 269.99951 * 3 2 1 31 31 H 1.08996 * 109.47266 * 30.00510 * 3 2 1 32 32 H 1.08996 * 109.46491 * 150.00615 * 3 2 1 33 33 H 1.08993 * 109.47536 * 59.99886 * 6 4 2 34 34 H 1.08998 * 109.47041 * 299.99097 * 6 4 2 35 35 H 1.08997 * 109.57714 * 305.15527 * 7 6 4 36 36 H 1.08997 * 109.50119 * 62.50485 * 8 7 6 37 37 H 1.08998 * 109.50509 * 302.38065 * 8 7 6 38 38 H 1.09000 * 109.46080 * 299.16751 * 9 8 7 39 39 H 1.09000 * 109.46189 * 179.19872 * 9 8 7 40 40 H 1.08002 * 120.25222 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.65794 * 180.22686 * 13 12 11 42 42 H 1.08000 * 120.42079 * 179.76677 * 14 13 12 43 43 H 0.97000 * 120.00086 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46078 * 181.76093 * 25 10 9 45 45 H 1.08997 * 109.46761 * 301.72877 * 25 10 9 46 46 H 1.08996 * 109.50157 * 180.87340 * 26 25 10 47 47 H 1.09000 * 109.50075 * 60.75963 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1559 -2.6096 -0.0010 8 6 5.6820 -2.6128 0.1241 9 6 6.1911 -4.0548 0.0625 10 7 5.7851 -4.6644 -1.2103 11 6 6.3408 -5.9282 -1.3562 12 6 6.5033 -6.4672 -2.6357 13 6 7.0624 -7.7273 -2.7793 14 6 7.4360 -8.4217 -1.6420 15 6 7.2426 -7.8278 -0.3828 16 6 7.6197 -8.5246 0.7873 17 1 7.6269 -9.6046 0.7940 18 6 7.9842 -7.8149 1.9380 19 7 8.1515 -8.4469 3.0703 20 14 8.2313 -5.9652 1.8554 21 1 6.9283 -5.2822 2.0571 22 1 9.1803 -5.5447 2.9174 23 1 8.7820 -5.5982 0.5260 24 7 6.7041 -6.6077 -0.2849 25 6 4.3226 -4.7155 -1.3320 26 6 3.7578 -3.2932 -1.3119 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3792 1.5835 -1.0277 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5137 33 1 4.0096 -0.6534 0.8888 34 1 4.0089 -0.6532 -0.8912 35 1 3.7205 -3.1509 0.8390 36 1 5.9700 -2.1656 1.0755 37 1 6.1155 -2.0385 -0.6947 38 1 5.7680 -4.6249 0.8895 39 1 7.2785 -4.0595 0.1370 40 1 6.1983 -5.9049 -3.5058 41 1 7.2000 -8.1603 -3.7591 42 1 7.8709 -9.4071 -1.7210 43 1 8.4044 -7.9553 3.8674 44 1 4.0529 -5.2002 -2.2704 45 1 3.9083 -5.2826 -0.4984 46 1 2.6711 -3.3322 -1.3867 47 1 4.1610 -2.7297 -2.1533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647144665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -2.183882 kcal Electronic energy + Delta-G solvation = -27108.882937 eV Core-core repulsion = 23484.161268 eV Total energy + Delta-G solvation = -3624.721669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35234 -39.41762 -37.63205 -35.78979 -34.40660 -33.32700 -31.23488 -30.45696 -30.40867 -28.80353 -27.66082 -26.07198 -25.46477 -23.12523 -22.82327 -21.35845 -20.55683 -19.48049 -19.27834 -17.63670 -17.13184 -16.64306 -16.29182 -16.14881 -14.93686 -14.80929 -14.64427 -14.41805 -14.34252 -14.10096 -13.68698 -13.33330 -13.09729 -13.01089 -12.96698 -12.78789 -12.66043 -12.40979 -12.37361 -12.04493 -11.90549 -11.73156 -11.34538 -11.07519 -10.86969 -10.59201 -10.57260 -10.43332 -10.35537 -10.11454 -9.99565 -9.65601 -9.20474 -8.97460 -8.64242 -8.38856 -7.91444 -7.30286 -6.84543 -4.63248 2.45770 2.47190 2.64566 2.74219 3.34570 3.42574 3.51799 4.26810 4.31836 4.33078 4.56021 4.66394 4.74240 4.83621 4.92114 4.97407 5.16834 5.23931 5.25258 5.34489 5.43294 5.49988 5.52449 5.59830 5.65684 5.76861 5.91151 5.93157 6.02059 6.08541 6.15844 6.20648 6.26080 6.34573 6.38380 6.45274 6.49155 6.58773 6.69592 6.73493 7.06217 7.14815 7.27805 7.47957 7.52917 7.72287 7.99763 8.02590 8.24910 8.63690 8.67963 9.55033 10.10495 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.003482 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.883980 B = 8040.365120 C = 8826.031596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.630 5.630 3 C 0.078 3.922 4 C 0.511 3.489 5 O -0.529 6.529 6 C -0.132 4.132 7 C -0.075 4.075 8 C -0.113 4.113 9 C 0.055 3.945 10 N -0.483 5.483 11 C 0.330 3.670 12 C -0.286 4.286 13 C -0.045 4.045 14 C -0.264 4.264 15 C 0.265 3.735 16 C -0.426 4.426 17 H 0.096 0.904 18 C 0.089 3.911 19 N -0.809 5.809 20 Si 0.966 3.034 21 H -0.256 1.256 22 H -0.321 1.321 23 H -0.269 1.269 24 N -0.585 5.585 25 C 0.068 3.932 26 C -0.111 4.111 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.286 0.714 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 20.054 -5.134 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C -0.065 4.065 4 C 0.300 3.700 5 O -0.405 6.405 6 C -0.172 4.172 7 C -0.094 4.094 8 C -0.151 4.151 9 C -0.072 4.072 10 N -0.204 5.204 11 C 0.097 3.903 12 C -0.311 4.311 13 C -0.069 4.069 14 C -0.286 4.286 15 C 0.140 3.860 16 C -0.458 4.458 17 H 0.114 0.886 18 C -0.132 4.132 19 N -0.434 5.434 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.253 1.253 23 H -0.195 1.195 24 N -0.307 5.307 25 C -0.059 4.059 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.134 20.045 -4.439 22.896 hybrid contribution 0.041 0.012 -0.131 0.137 sum -10.093 20.057 -4.569 22.914 Atomic orbital electron populations 1.21614 0.79430 1.03025 1.01733 1.47848 1.07074 1.06605 1.74976 1.21817 0.97463 0.85269 1.01991 1.20913 0.90674 0.82944 0.75440 1.90693 1.70424 1.30748 1.48634 1.21786 0.91169 1.00148 1.04095 1.21008 0.95414 0.93221 0.99725 1.21721 0.94437 0.97315 1.01652 1.22351 1.00524 0.93479 0.90883 1.59666 1.09293 1.17311 1.34103 1.19567 0.93412 0.87392 0.89957 1.20732 1.16109 0.98709 0.95525 1.20913 0.94839 0.93842 0.97325 1.21724 1.11691 1.02319 0.92887 1.18417 0.87749 0.86922 0.92949 1.19378 1.37680 0.95834 0.92859 0.88598 1.26235 0.90413 1.02955 0.93620 1.69637 1.33290 1.39970 1.00464 0.85441 0.78123 0.80393 0.76218 1.18208 1.25260 1.19494 1.67376 1.21335 1.11019 1.30931 1.22036 0.85512 0.96889 1.01466 1.21745 1.01343 0.95238 0.96547 0.92906 0.91454 0.90476 0.92453 0.91088 0.90670 0.88952 0.88781 0.90480 0.91673 0.91241 0.92091 0.90993 0.87614 0.87669 0.87378 0.90416 0.90626 0.94221 0.89897 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.44 59.85 0.62 1.27 16 2 N -0.63 -5.53 3.27 -189.51 -0.62 -6.15 16 3 C 0.08 0.39 10.24 59.85 0.61 1.00 16 4 C 0.51 5.99 7.41 -10.99 -0.08 5.90 16 5 O -0.53 -8.27 13.57 5.56 0.08 -8.20 16 6 C -0.13 -1.31 3.73 -27.88 -0.10 -1.42 16 7 C -0.07 -1.01 1.90 -90.49 -0.17 -1.19 16 8 C -0.11 -1.62 5.38 -26.65 -0.14 -1.76 16 9 C 0.05 1.07 3.55 -3.83 -0.01 1.05 16 10 N -0.48 -9.65 4.61 -173.19 -0.80 -10.45 16 11 C 0.33 7.65 5.85 -155.32 -0.91 6.74 16 12 C -0.29 -6.19 9.74 -38.87 -0.38 -6.57 16 13 C -0.04 -0.95 10.15 -39.39 -0.40 -1.35 16 14 C -0.26 -6.28 9.83 -38.65 -0.38 -6.66 16 15 C 0.27 7.06 5.90 -85.00 -0.50 6.56 16 16 C -0.43 -11.94 9.67 -37.74 -0.37 -12.31 16 17 H 0.10 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.09 2.45 5.51 -17.35 -0.10 2.35 16 19 N -0.81 -22.36 13.92 55.55 0.77 -21.58 16 20 Si 0.97 23.80 22.84 -169.99 -3.88 19.92 16 21 H -0.26 -6.12 4.90 56.52 0.28 -5.84 16 22 H -0.32 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.27 -6.95 6.70 56.52 0.38 -6.57 16 24 N -0.58 -15.08 4.96 -10.33 -0.05 -15.14 16 25 C 0.07 1.20 5.37 -3.83 -0.02 1.18 16 26 C -0.11 -1.62 5.09 -26.65 -0.14 -1.76 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 29 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 32 H 0.07 0.32 6.44 -51.93 -0.33 -0.02 16 33 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 34 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.34 5.96 -51.93 -0.31 1.03 16 39 H 0.07 1.51 5.93 -51.93 -0.31 1.20 16 40 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.29 7.21 8.29 -40.82 -0.34 6.87 16 44 H 0.08 1.30 7.88 -51.92 -0.41 0.89 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.26 6.04 -51.93 -0.31 0.95 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -32.29 360.31 -9.16 -41.46 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.63 Total: 1.66 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.46 Total: -6.96 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.70 Total: -53.31 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -3.88 Total: 19.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.29 -9.16 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647144665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.271 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds