Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46507 * 119.99782 * 2 1 4 4 C 1.34775 * 120.00206 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99569 * 359.97438 * 4 2 1 6 6 C 1.50694 * 119.99884 * 179.97438 * 4 2 1 7 7 C 1.53004 * 109.46702 * 179.97438 * 6 4 2 8 8 C 1.53122 * 109.52089 * 184.99639 * 7 6 4 9 9 C 1.53045 * 109.27757 * 182.43963 * 8 7 6 10 10 N 1.46847 * 109.52035 * 59.18224 * 9 8 7 11 11 C 1.38824 * 110.99784 * 174.16179 * 10 9 8 12 12 C 1.39790 * 119.58637 * 203.52826 * 11 10 9 13 13 C 1.38601 * 119.49330 * 179.78616 * 12 11 10 14 14 C 1.38390 * 118.67758 * 0.48070 * 13 12 11 15 15 C 1.40550 * 119.14951 * 359.74407 * 14 13 12 16 16 C 1.41315 * 119.78522 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00025 * 332.41975 * 16 15 14 18 18 C 1.40024 * 120.00327 * 152.41361 * 16 15 14 19 19 N 1.30744 * 120.00308 * 170.44460 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 350.44089 * 18 16 15 21 21 H 1.48493 * 109.47192 * 86.47006 * 20 18 16 22 22 H 1.48501 * 109.46944 * 206.46804 * 20 18 16 23 23 H 1.48500 * 109.47475 * 326.46624 * 20 18 16 24 24 N 1.31962 * 119.58355 * 23.80023 * 11 10 9 25 25 C 1.46846 * 111.19722 * 298.25321 * 10 9 8 26 26 C 1.53041 * 109.52114 * 61.74653 * 25 10 9 27 27 H 1.08999 * 109.46550 * 269.99620 * 1 2 3 28 28 H 1.09001 * 109.47113 * 29.99730 * 1 2 3 29 29 H 1.08997 * 109.46863 * 150.00099 * 1 2 3 30 30 H 1.09000 * 109.47033 * 269.99951 * 3 2 1 31 31 H 1.08996 * 109.47266 * 30.00510 * 3 2 1 32 32 H 1.08996 * 109.46491 * 150.00615 * 3 2 1 33 33 H 1.08993 * 109.47536 * 59.99886 * 6 4 2 34 34 H 1.08998 * 109.47041 * 299.99097 * 6 4 2 35 35 H 1.08997 * 109.57714 * 305.15527 * 7 6 4 36 36 H 1.08997 * 109.50119 * 62.50485 * 8 7 6 37 37 H 1.08998 * 109.50509 * 302.38065 * 8 7 6 38 38 H 1.09000 * 109.46080 * 299.16751 * 9 8 7 39 39 H 1.09000 * 109.46189 * 179.19872 * 9 8 7 40 40 H 1.08002 * 120.25222 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.65794 * 180.22686 * 13 12 11 42 42 H 1.08000 * 120.42079 * 179.76677 * 14 13 12 43 43 H 0.97000 * 120.00086 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46078 * 181.76093 * 25 10 9 45 45 H 1.08997 * 109.46761 * 301.72877 * 25 10 9 46 46 H 1.08996 * 109.50157 * 180.87340 * 26 25 10 47 47 H 1.09000 * 109.50075 * 60.75963 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1559 -2.6096 -0.0010 8 6 5.6820 -2.6128 0.1241 9 6 6.1911 -4.0548 0.0625 10 7 5.7851 -4.6644 -1.2103 11 6 6.3408 -5.9282 -1.3562 12 6 6.5033 -6.4672 -2.6357 13 6 7.0624 -7.7273 -2.7793 14 6 7.4360 -8.4217 -1.6420 15 6 7.2426 -7.8278 -0.3828 16 6 7.6197 -8.5246 0.7873 17 1 7.6269 -9.6046 0.7940 18 6 7.9842 -7.8149 1.9380 19 7 8.1515 -8.4469 3.0703 20 14 8.2313 -5.9652 1.8554 21 1 6.9283 -5.2822 2.0571 22 1 9.1803 -5.5447 2.9174 23 1 8.7820 -5.5982 0.5260 24 7 6.7041 -6.6077 -0.2849 25 6 4.3226 -4.7155 -1.3320 26 6 3.7578 -3.2932 -1.3119 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3792 1.5835 -1.0277 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5137 33 1 4.0096 -0.6534 0.8888 34 1 4.0089 -0.6532 -0.8912 35 1 3.7205 -3.1509 0.8390 36 1 5.9700 -2.1656 1.0755 37 1 6.1155 -2.0385 -0.6947 38 1 5.7680 -4.6249 0.8895 39 1 7.2785 -4.0595 0.1370 40 1 6.1983 -5.9049 -3.5058 41 1 7.2000 -8.1603 -3.7591 42 1 7.8709 -9.4071 -1.7210 43 1 8.4044 -7.9553 3.8674 44 1 4.0529 -5.2002 -2.2704 45 1 3.9083 -5.2826 -0.4984 46 1 2.6711 -3.3322 -1.3867 47 1 4.1610 -2.7297 -2.1533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647144665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -23.141631 kcal Electronic energy + Delta-G solvation = -27109.791733 eV Core-core repulsion = 23484.161268 eV Total energy + Delta-G solvation = -3625.630465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48833 -40.82455 -39.14453 -36.57539 -35.91877 -35.12520 -33.06576 -31.87948 -31.82630 -29.96690 -28.44745 -27.58378 -26.62481 -24.56406 -24.13377 -23.07417 -22.25282 -20.74801 -20.06683 -19.64237 -18.42767 -17.86865 -17.05732 -16.89071 -16.72515 -16.49841 -16.46469 -16.07701 -15.41499 -15.34658 -14.83422 -14.68510 -14.58897 -14.40549 -14.13971 -13.77542 -13.60853 -13.52306 -13.43991 -13.34885 -12.99305 -12.94107 -12.83000 -12.66741 -12.63060 -12.32708 -12.15946 -11.99812 -11.70048 -11.52349 -11.31104 -11.20434 -10.67980 -10.42553 -10.20922 -9.83258 -9.63595 -9.12888 -8.89209 -6.71697 0.57232 0.78508 1.31346 1.44473 1.51599 1.65557 2.11225 2.28264 2.54546 2.76080 3.47655 3.56783 3.70593 3.79293 3.97066 4.05873 4.27812 4.32218 4.32588 4.40122 4.44493 4.48975 4.51182 4.55899 4.59857 4.66369 4.69232 4.76004 4.78730 4.81174 4.84454 4.90975 4.92343 4.95899 5.02860 5.08883 5.15040 5.20282 5.26918 5.46241 5.48889 5.56709 5.68194 5.82080 5.91367 6.04372 6.28016 6.38490 6.62257 6.71584 7.21683 7.62045 8.10302 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.003482 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.883980 B = 8040.365120 C = 8826.031596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.627 5.627 3 C 0.069 3.931 4 C 0.502 3.498 5 O -0.583 6.583 6 C -0.121 4.121 7 C -0.072 4.072 8 C -0.102 4.102 9 C 0.052 3.948 10 N -0.473 5.473 11 C 0.307 3.693 12 C -0.269 4.269 13 C -0.034 4.034 14 C -0.279 4.279 15 C 0.248 3.752 16 C -0.465 4.465 17 H 0.071 0.929 18 C 0.056 3.944 19 N -0.845 5.845 20 Si 1.016 2.984 21 H -0.253 1.253 22 H -0.309 1.309 23 H -0.287 1.287 24 N -0.603 5.603 25 C 0.069 3.931 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.293 0.707 44 H 0.082 0.918 45 H 0.007 0.993 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 24.176 -7.600 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.360 5.360 3 C -0.072 4.072 4 C 0.292 3.708 5 O -0.463 6.463 6 C -0.161 4.161 7 C -0.091 4.091 8 C -0.140 4.140 9 C -0.075 4.075 10 N -0.193 5.193 11 C 0.075 3.925 12 C -0.293 4.293 13 C -0.059 4.059 14 C -0.300 4.300 15 C 0.121 3.879 16 C -0.498 4.498 17 H 0.090 0.910 18 C -0.161 4.161 19 N -0.472 5.472 20 Si 0.847 3.153 21 H -0.178 1.178 22 H -0.240 1.240 23 H -0.214 1.214 24 N -0.325 5.325 25 C -0.058 4.058 26 C -0.137 4.137 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.026 0.974 46 H 0.095 0.905 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.507 24.226 -6.907 27.294 hybrid contribution 0.033 -1.216 0.397 1.280 sum -10.474 23.009 -6.510 26.106 Atomic orbital electron populations 1.21698 0.79152 1.03357 1.01956 1.47997 1.07616 1.07180 1.73242 1.22119 0.97957 0.83720 1.03442 1.21274 0.91487 0.83037 0.75020 1.90680 1.71444 1.32771 1.51412 1.21719 0.89897 0.97640 1.06798 1.20905 0.94828 0.95527 0.97876 1.21692 0.94656 0.93788 1.03861 1.22351 0.99331 0.96415 0.89428 1.59842 1.10125 1.15292 1.34089 1.20172 0.93533 0.88571 0.90250 1.21243 1.13464 0.98711 0.95896 1.21397 0.92740 0.93255 0.98482 1.21941 1.12145 1.03112 0.92851 1.18572 0.88031 0.87681 0.93637 1.19365 1.40910 0.94951 0.94548 0.91046 1.26788 0.90254 1.05663 0.93396 1.69650 1.35469 1.41063 1.01019 0.84729 0.78127 0.77146 0.75257 1.17834 1.23982 1.21438 1.67310 1.21480 1.11021 1.32702 1.22117 0.84154 0.99092 1.00392 1.21660 1.00746 0.93208 0.98039 0.92787 0.88406 0.92819 0.90976 0.89325 0.89414 0.86281 0.85801 0.93635 0.89568 0.88783 0.95575 0.92856 0.84282 0.82986 0.86449 0.89653 0.89969 0.97433 0.90530 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.44 127.77 1.33 2.43 16 2 N -0.63 -9.24 3.27 -871.88 -2.85 -12.09 16 3 C 0.07 0.39 10.24 127.77 1.31 1.70 16 4 C 0.50 10.73 7.41 87.66 0.65 11.38 16 5 O -0.58 -18.21 13.57 -3.04 -0.04 -18.25 16 6 C -0.12 -1.96 3.73 29.85 0.11 -1.84 16 7 C -0.07 -1.82 1.90 -10.71 -0.02 -1.84 16 8 C -0.10 -2.64 5.38 30.65 0.16 -2.47 16 9 C 0.05 2.00 3.55 86.33 0.31 2.31 16 10 N -0.47 -18.28 4.61 -701.86 -3.24 -21.52 16 11 C 0.31 13.97 5.85 133.41 0.78 14.75 16 12 C -0.27 -10.84 9.74 22.73 0.22 -10.62 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.28 -13.16 9.83 22.87 0.22 -12.94 16 15 C 0.25 13.54 5.90 40.18 0.24 13.77 16 16 C -0.47 -27.56 9.67 23.46 0.23 -27.33 16 17 H 0.07 4.41 8.06 -2.91 -0.02 4.38 16 18 C 0.06 3.21 5.51 85.29 0.47 3.68 16 19 N -0.85 -48.98 13.92 21.84 0.30 -48.68 16 20 Si 1.02 51.00 22.84 68.60 1.57 52.56 16 21 H -0.25 -12.35 4.90 99.48 0.49 -11.86 16 22 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.29 -15.08 6.70 99.48 0.67 -14.41 16 24 N -0.60 -31.65 4.96 -186.59 -0.93 -32.57 16 25 C 0.07 2.39 5.37 86.33 0.46 2.86 16 26 C -0.10 -2.70 5.09 30.65 0.16 -2.54 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 29 H 0.05 0.99 7.42 -2.39 -0.02 0.97 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.22 8.07 -2.39 -0.02 0.20 16 32 H 0.09 0.30 6.44 -2.39 -0.02 0.28 16 33 H 0.12 1.33 7.40 -2.39 -0.02 1.31 16 34 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.05 1.44 7.95 -2.39 -0.02 1.42 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.17 5.96 -2.39 -0.01 1.16 16 39 H 0.05 2.21 5.93 -2.39 -0.01 2.20 16 40 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 43 H 0.29 15.42 8.29 -92.71 -0.77 14.65 16 44 H 0.08 2.71 7.88 -2.38 -0.02 2.69 16 45 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.08 2.26 6.04 -2.39 -0.01 2.25 16 47 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.92 360.31 2.37 -73.55 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.69 Total: 14.84 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 6.86 Total: -7.85 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -6.71 Total: -114.86 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.04 Total: -18.25 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.57 Total: 52.56 kcal Total: -75.92 2.37 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647144665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.411 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds