Wall clock time and date at job start Tue Mar 31 2020 11:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99683 * 2 1 4 4 C 1.50700 * 109.47222 * 66.04708 * 3 2 1 5 5 O 1.21277 * 119.99734 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99679 * 179.97438 * 4 3 2 7 7 C 1.47018 * 125.65071 * 0.02562 * 6 4 3 8 8 C 1.54325 * 107.26791 * 178.89555 * 7 6 4 9 9 C 1.55156 * 102.94629 * 337.80770 * 8 7 6 10 10 H 1.09003 * 111.00111 * 277.39436 * 9 8 7 11 11 N 1.46490 * 111.00784 * 153.57711 * 9 8 7 12 12 C 1.36935 * 120.00121 * 86.45040 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 C 1.47428 * 125.64274 * 179.97438 * 6 4 3 21 21 C 1.46896 * 110.99613 * 236.04785 * 2 1 3 22 22 C 1.50702 * 109.47349 * 293.95074 * 21 2 1 23 23 C 1.38237 * 119.99972 * 269.73430 * 22 21 2 24 24 C 1.38234 * 119.99876 * 179.78480 * 23 22 21 25 25 C 1.38234 * 119.99782 * 0.44281 * 24 23 22 26 26 C 1.38237 * 120.00471 * 359.80873 * 25 24 23 27 27 C 1.38237 * 119.99732 * 90.00361 * 22 21 2 28 28 H 1.09001 * 109.46738 * 60.00193 * 1 2 3 29 29 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47168 * 300.00240 * 1 2 3 31 31 H 1.09002 * 109.47187 * 306.04192 * 3 2 1 32 32 H 1.08997 * 109.46638 * 186.04441 * 3 2 1 33 33 H 1.09001 * 109.88396 * 59.48131 * 7 6 4 34 34 H 1.08997 * 110.01525 * 298.38469 * 7 6 4 35 35 H 1.09006 * 110.71936 * 219.44530 * 8 7 6 36 36 H 1.08998 * 110.72187 * 96.17134 * 8 7 6 37 37 H 0.97000 * 120.00577 * 266.45640 * 11 9 8 38 38 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 39 39 H 1.09009 * 110.36455 * 85.34120 * 20 6 4 40 40 H 1.09000 * 110.36736 * 323.01733 * 20 6 4 41 41 H 1.08998 * 109.47503 * 53.95602 * 21 2 1 42 42 H 1.09008 * 109.46803 * 173.95925 * 21 2 1 43 43 H 1.08004 * 119.99982 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.00093 * 180.27275 * 24 23 22 45 45 H 1.08007 * 120.00248 * 179.83557 * 25 24 23 46 46 H 1.08003 * 120.00280 * 180.02562 * 26 25 24 47 47 H 1.07989 * 120.00096 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0047 1.4456 2.1406 6 7 2.0189 3.3199 1.5236 7 6 2.7848 4.1620 0.5933 8 6 2.9625 5.5407 1.2636 9 6 1.8018 5.5791 2.2925 10 1 0.8693 5.8850 1.8182 11 7 2.1274 6.4572 3.4190 12 6 1.8649 7.7988 3.3395 13 1 1.4174 8.2095 2.4465 14 6 2.1739 8.6310 4.4067 15 7 2.7197 8.1305 5.4949 16 14 1.8151 10.4610 4.2985 17 1 2.2357 11.1233 5.5594 18 1 2.5657 11.0459 3.1584 19 1 0.3593 10.6687 4.0916 20 6 1.7367 4.0985 2.7433 21 6 1.9954 -0.7659 -1.1376 22 6 1.6369 -2.2204 -0.9729 23 6 2.4965 -3.0729 -0.3055 24 6 2.1656 -4.4060 -0.1506 25 6 0.9794 -4.8887 -0.6710 26 6 0.1222 -4.0374 -1.3429 27 6 0.4511 -2.7033 -1.4941 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.2376 4.2728 -0.3428 34 1 3.7601 3.7146 0.4017 35 1 2.8560 6.3418 0.5321 36 1 3.9269 5.6030 1.7678 37 1 2.5290 6.0884 4.2212 38 1 2.9057 7.1802 5.5511 39 1 2.4925 3.8999 3.5034 40 1 0.7433 3.8610 3.1237 41 1 1.5611 -0.3872 -2.0628 42 1 3.0798 -0.6611 -1.1756 43 1 3.4252 -2.6966 0.0975 44 1 2.8351 -5.0711 0.3746 45 1 0.7221 -5.9309 -0.5523 46 1 -0.8048 -4.4145 -1.7491 47 1 -0.2185 -2.0382 -2.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661382092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:22 Heat of formation + Delta-G solvation = 21.991888 kcal Electronic energy + Delta-G solvation = -25746.710446 eV Core-core repulsion = 22123.037116 eV Total energy + Delta-G solvation = -3623.673329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17155 -39.54066 -37.78513 -36.48446 -34.44606 -32.11681 -31.58877 -31.18099 -29.53942 -28.83013 -27.42491 -26.87437 -23.84970 -23.16298 -22.79002 -22.48651 -21.08780 -20.27558 -19.08767 -17.51777 -17.33663 -16.86882 -16.33539 -15.93442 -15.63934 -15.43844 -15.16068 -14.76309 -14.59823 -14.12057 -13.71575 -13.69551 -13.61103 -13.30594 -13.02186 -12.83895 -12.75969 -12.48551 -12.33758 -12.12932 -11.88755 -11.72417 -11.58688 -11.28024 -11.22846 -11.06475 -10.75298 -10.68556 -10.30375 -10.02641 -9.68273 -9.25859 -9.15876 -9.08185 -8.99356 -8.54307 -8.44037 -7.15004 -6.17499 -3.19640 1.04977 1.15215 2.72266 2.92272 3.46475 3.48481 3.51450 3.69210 3.94530 4.43589 4.50726 4.56625 4.61014 4.74043 4.82935 4.93710 4.95094 4.96834 5.05910 5.14854 5.21719 5.24048 5.27601 5.34602 5.43300 5.45015 5.47181 5.55232 5.67281 5.72080 5.77772 5.86507 5.95029 6.01125 6.13934 6.17938 6.25039 6.26862 6.34233 6.44259 6.49757 6.67372 6.74522 6.78735 6.79999 7.66867 7.72773 8.30321 8.67633 9.11912 9.98495 10.11918 11.30327 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.041896 B = 0.001980 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.160362 B =14134.721166 C =14220.465337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.519 5.519 3 C 0.042 3.958 4 C 0.527 3.473 5 O -0.526 6.526 6 N -0.615 5.615 7 C 0.101 3.899 8 C -0.154 4.154 9 C 0.177 3.823 10 H 0.063 0.937 11 N -0.726 5.726 12 C -0.336 4.336 13 H 0.066 0.934 14 C -0.042 4.042 15 N -0.940 5.940 16 Si 1.081 2.919 17 H -0.284 1.284 18 H -0.295 1.295 19 H -0.294 1.294 20 C 0.101 3.899 21 C 0.093 3.907 22 C -0.075 4.075 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.113 4.113 28 H 0.020 0.980 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.369 0.631 38 H 0.256 0.744 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -22.083 -18.081 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.243 5.243 3 C -0.089 4.089 4 C 0.315 3.685 5 O -0.402 6.402 6 N -0.351 5.351 7 C -0.023 4.023 8 C -0.195 4.195 9 C 0.065 3.935 10 H 0.081 0.919 11 N -0.368 5.368 12 C -0.467 4.467 13 H 0.084 0.916 14 C -0.240 4.240 15 N -0.584 5.584 16 Si 0.911 3.089 17 H -0.210 1.210 18 H -0.222 1.222 19 H -0.222 1.222 20 C -0.023 4.023 21 C -0.035 4.035 22 C -0.076 4.076 23 C -0.115 4.115 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.131 4.131 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.203 0.797 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.126 -21.124 -16.549 26.858 hybrid contribution -0.142 -1.161 -1.476 1.883 sum -1.269 -22.284 -18.025 28.690 Atomic orbital electron populations 1.22660 0.86308 1.02711 1.01614 1.61638 1.09167 1.11427 1.42020 1.21946 1.01933 0.89637 0.95378 1.20039 0.79635 0.80030 0.88841 1.90674 1.39681 1.63150 1.46729 1.48462 1.55226 1.11947 1.19457 1.22098 0.95097 0.92259 0.92810 1.23386 1.02371 0.93582 1.00156 1.21225 0.95442 0.87546 0.89276 0.91867 1.42261 1.74798 1.05069 1.14696 1.19999 1.39489 0.84158 1.03030 0.91569 1.25827 0.99458 1.05860 0.92864 1.70889 1.45124 1.14313 1.28102 0.83231 0.75642 0.74419 0.75562 1.20978 1.22197 1.22183 1.22501 1.01513 0.91602 0.86645 1.21093 1.00555 0.90081 0.91731 1.19676 0.94883 0.94763 0.98252 1.21045 0.99667 0.93222 0.97566 1.21165 0.97153 0.95706 0.99935 1.21156 0.94711 0.99712 0.98401 1.21110 0.99623 0.93679 0.99663 1.21063 0.96297 0.95651 1.00132 0.96191 0.90998 0.89163 0.91902 0.87945 0.91960 0.91968 0.90651 0.90661 0.79670 0.93283 0.91576 0.90597 0.93778 0.89750 0.85927 0.86084 0.86252 0.86186 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.86 60.07 0.53 0.70 16 2 N -0.52 -5.93 4.49 -245.82 -1.10 -7.04 16 3 C 0.04 0.46 4.64 -4.98 -0.02 0.44 16 4 C 0.53 7.96 7.57 -10.99 -0.08 7.87 16 5 O -0.53 -9.89 14.56 5.56 0.08 -9.81 16 6 N -0.62 -9.25 3.33 -170.52 -0.57 -9.82 16 7 C 0.10 1.26 6.49 -3.07 -0.02 1.24 16 8 C -0.15 -2.45 6.65 -24.90 -0.17 -2.62 16 9 C 0.18 3.40 3.69 -65.79 -0.24 3.16 16 10 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 11 N -0.73 -17.57 5.28 -51.36 -0.27 -17.85 16 12 C -0.34 -9.14 9.98 -15.06 -0.15 -9.29 16 13 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 14 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 15 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 16 Si 1.08 25.33 29.92 -169.99 -5.09 20.24 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.10 1.78 6.53 -2.53 -0.02 1.76 16 21 C 0.09 0.81 5.12 -4.98 -0.03 0.79 16 22 C -0.08 -0.70 4.89 -104.62 -0.51 -1.21 16 23 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.11 -0.97 7.91 -39.58 -0.31 -1.29 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.80 5.89 -51.93 -0.31 0.49 16 30 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 31 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 32 H 0.10 0.93 7.93 -51.93 -0.41 0.52 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.37 9.28 6.54 -40.82 -0.27 9.01 16 38 H 0.26 7.66 6.77 -40.82 -0.28 7.39 16 39 H 0.07 1.21 8.00 -51.92 -0.42 0.79 16 40 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 41 H 0.04 0.34 8.06 -51.93 -0.42 -0.08 16 42 H 0.08 0.64 7.87 -51.92 -0.41 0.23 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.12 0.87 7.98 -52.49 -0.42 0.45 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -33.10 380.24 -10.65 -43.75 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.50 Total: 7.77 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.69 Total: -5.16 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -1.18 Total: -62.52 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.10 -10.65 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661382092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.742 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds