Wall clock time and date at job start Tue Mar 31 2020 11:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99683 * 2 1 4 4 C 1.50700 * 109.47222 * 66.04708 * 3 2 1 5 5 O 1.21277 * 119.99734 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99679 * 179.97438 * 4 3 2 7 7 C 1.47018 * 125.65071 * 0.02562 * 6 4 3 8 8 C 1.54325 * 107.26791 * 178.89555 * 7 6 4 9 9 C 1.55156 * 102.94629 * 337.80770 * 8 7 6 10 10 H 1.09003 * 111.00111 * 277.39436 * 9 8 7 11 11 N 1.46490 * 111.00784 * 153.57711 * 9 8 7 12 12 C 1.36935 * 120.00121 * 86.45040 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 C 1.47428 * 125.64274 * 179.97438 * 6 4 3 21 21 C 1.46896 * 110.99613 * 236.04785 * 2 1 3 22 22 C 1.50702 * 109.47349 * 293.95074 * 21 2 1 23 23 C 1.38237 * 119.99972 * 269.73430 * 22 21 2 24 24 C 1.38234 * 119.99876 * 179.78480 * 23 22 21 25 25 C 1.38234 * 119.99782 * 0.44281 * 24 23 22 26 26 C 1.38237 * 120.00471 * 359.80873 * 25 24 23 27 27 C 1.38237 * 119.99732 * 90.00361 * 22 21 2 28 28 H 1.09001 * 109.46738 * 60.00193 * 1 2 3 29 29 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47168 * 300.00240 * 1 2 3 31 31 H 1.09002 * 109.47187 * 306.04192 * 3 2 1 32 32 H 1.08997 * 109.46638 * 186.04441 * 3 2 1 33 33 H 1.09001 * 109.88396 * 59.48131 * 7 6 4 34 34 H 1.08997 * 110.01525 * 298.38469 * 7 6 4 35 35 H 1.09006 * 110.71936 * 219.44530 * 8 7 6 36 36 H 1.08998 * 110.72187 * 96.17134 * 8 7 6 37 37 H 0.97000 * 120.00577 * 266.45640 * 11 9 8 38 38 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 39 39 H 1.09009 * 110.36455 * 85.34120 * 20 6 4 40 40 H 1.09000 * 110.36736 * 323.01733 * 20 6 4 41 41 H 1.08998 * 109.47503 * 53.95602 * 21 2 1 42 42 H 1.09008 * 109.46803 * 173.95925 * 21 2 1 43 43 H 1.08004 * 119.99982 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.00093 * 180.27275 * 24 23 22 45 45 H 1.08007 * 120.00248 * 179.83557 * 25 24 23 46 46 H 1.08003 * 120.00280 * 180.02562 * 26 25 24 47 47 H 1.07989 * 120.00096 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0047 1.4456 2.1406 6 7 2.0189 3.3199 1.5236 7 6 2.7848 4.1620 0.5933 8 6 2.9625 5.5407 1.2636 9 6 1.8018 5.5791 2.2925 10 1 0.8693 5.8850 1.8182 11 7 2.1274 6.4572 3.4190 12 6 1.8649 7.7988 3.3395 13 1 1.4174 8.2095 2.4465 14 6 2.1739 8.6310 4.4067 15 7 2.7197 8.1305 5.4949 16 14 1.8151 10.4610 4.2985 17 1 2.2357 11.1233 5.5594 18 1 2.5657 11.0459 3.1584 19 1 0.3593 10.6687 4.0916 20 6 1.7367 4.0985 2.7433 21 6 1.9954 -0.7659 -1.1376 22 6 1.6369 -2.2204 -0.9729 23 6 2.4965 -3.0729 -0.3055 24 6 2.1656 -4.4060 -0.1506 25 6 0.9794 -4.8887 -0.6710 26 6 0.1222 -4.0374 -1.3429 27 6 0.4511 -2.7033 -1.4941 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.2376 4.2728 -0.3428 34 1 3.7601 3.7146 0.4017 35 1 2.8560 6.3418 0.5321 36 1 3.9269 5.6030 1.7678 37 1 2.5290 6.0884 4.2212 38 1 2.9057 7.1802 5.5511 39 1 2.4925 3.8999 3.5034 40 1 0.7433 3.8610 3.1237 41 1 1.5611 -0.3872 -2.0628 42 1 3.0798 -0.6611 -1.1756 43 1 3.4252 -2.6966 0.0975 44 1 2.8351 -5.0711 0.3746 45 1 0.7221 -5.9309 -0.5523 46 1 -0.8048 -4.4145 -1.7491 47 1 -0.2185 -2.0382 -2.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661382092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:22 Heat of formation + Delta-G solvation = 0.620031 kcal Electronic energy + Delta-G solvation = -25747.637199 eV Core-core repulsion = 22123.037116 eV Total energy + Delta-G solvation = -3624.600082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26993 -40.28628 -38.99915 -37.46737 -36.25403 -33.43933 -32.65920 -31.78291 -31.01296 -30.02743 -28.45372 -27.88008 -25.56011 -24.51931 -23.54902 -23.33605 -21.85700 -21.67863 -20.26052 -19.47144 -18.36856 -17.60184 -17.46758 -16.98754 -16.66755 -16.43519 -16.28521 -15.79331 -15.71503 -15.55348 -15.18165 -14.65592 -14.60321 -14.35045 -14.22634 -13.79016 -13.68701 -13.58025 -13.37902 -13.24533 -12.90379 -12.77197 -12.69903 -12.54272 -12.47048 -12.38387 -11.91104 -11.88122 -11.81251 -11.74398 -11.30279 -10.94081 -10.86271 -9.78026 -9.72637 -9.69905 -9.28029 -9.16923 -8.39934 -5.36096 0.42891 0.53817 1.58223 1.59929 1.69826 1.79951 1.86036 2.71410 2.76230 3.20185 3.34590 3.47364 3.59342 3.80512 3.83636 3.96055 3.98297 4.12610 4.18455 4.20733 4.26991 4.27398 4.31453 4.37147 4.39440 4.45850 4.56204 4.62600 4.64776 4.73214 4.76834 4.81182 4.91489 5.05954 5.14046 5.16744 5.18229 5.19035 5.34541 5.57449 5.59703 5.65233 5.70546 5.88019 6.01247 6.15727 6.47122 6.52409 7.04485 7.14102 7.94005 8.06028 9.11378 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.041896 B = 0.001980 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.160362 B =14134.721166 C =14220.465337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.051 3.949 4 C 0.521 3.479 5 O -0.572 6.572 6 N -0.615 5.615 7 C 0.108 3.892 8 C -0.144 4.144 9 C 0.169 3.831 10 H 0.057 0.943 11 N -0.742 5.742 12 C -0.329 4.329 13 H 0.073 0.927 14 C -0.105 4.105 15 N -0.975 5.975 16 Si 1.129 2.871 17 H -0.296 1.296 18 H -0.273 1.273 19 H -0.279 1.279 20 C 0.110 3.890 21 C 0.097 3.903 22 C -0.090 4.090 23 C -0.114 4.114 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.122 4.122 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.360 0.640 38 H 0.243 0.757 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -22.561 -21.297 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.079 4.079 4 C 0.311 3.689 5 O -0.451 6.451 6 N -0.350 5.350 7 C -0.014 4.014 8 C -0.184 4.184 9 C 0.059 3.941 10 H 0.075 0.925 11 N -0.384 5.384 12 C -0.460 4.460 13 H 0.090 0.910 14 C -0.296 4.296 15 N -0.623 5.623 16 Si 0.953 3.047 17 H -0.222 1.222 18 H -0.199 1.199 19 H -0.205 1.205 20 C -0.014 4.014 21 C -0.030 4.030 22 C -0.090 4.090 23 C -0.132 4.132 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.192 0.808 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.829 -21.638 -19.854 29.378 hybrid contribution -0.282 -1.137 -0.504 1.275 sum -1.112 -22.775 -20.357 30.567 Atomic orbital electron populations 1.22491 0.86940 1.02435 1.00693 1.61553 1.08881 1.12056 1.43948 1.21971 1.03590 0.89305 0.93036 1.20949 0.78485 0.79520 0.89935 1.90665 1.41665 1.64137 1.48624 1.48537 1.55481 1.12274 1.18745 1.22228 0.96932 0.89591 0.92666 1.23178 0.99665 0.96441 0.99142 1.21384 0.96524 0.87406 0.88739 0.92455 1.42435 1.75097 1.04935 1.15916 1.20345 1.37503 0.85467 1.02709 0.90953 1.27244 0.99803 1.09866 0.92696 1.70999 1.47984 1.13656 1.29674 0.82617 0.76502 0.69935 0.75614 1.22235 1.19932 1.20494 1.22141 1.00102 0.91265 0.87912 1.21127 1.01354 0.89256 0.91214 1.19856 0.95274 0.95252 0.98665 1.21242 1.00113 0.93803 0.98063 1.21432 0.97740 0.95835 1.00091 1.21464 0.94522 1.00783 0.98014 1.21417 1.00352 0.93667 0.99488 1.21274 0.96351 0.96197 1.00245 0.94477 0.91007 0.92537 0.89220 0.85261 0.88642 0.88810 0.89749 0.92078 0.80763 0.94613 0.92819 0.92531 0.92214 0.88349 0.85626 0.84728 0.84424 0.84431 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 8.86 127.69 1.13 1.62 16 2 N -0.54 -11.17 4.49 -931.62 -4.18 -15.36 16 3 C 0.05 0.95 4.64 85.56 0.40 1.34 16 4 C 0.52 14.99 7.57 87.66 0.66 15.65 16 5 O -0.57 -21.79 14.56 -3.02 -0.04 -21.83 16 6 N -0.62 -17.50 3.33 -811.79 -2.70 -20.20 16 7 C 0.11 2.30 6.49 86.73 0.56 2.87 16 8 C -0.14 -4.30 6.65 31.78 0.21 -4.09 16 9 C 0.17 6.48 3.69 46.39 0.17 6.65 16 10 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 11 N -0.74 -36.64 5.28 -316.39 -1.67 -38.31 16 12 C -0.33 -17.96 9.98 84.03 0.84 -17.12 16 13 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 14 C -0.11 -6.01 5.50 84.86 0.47 -5.54 16 15 N -0.98 -60.86 13.70 21.65 0.30 -60.56 16 16 Si 1.13 50.96 29.92 68.60 2.05 53.01 16 17 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 20 C 0.11 3.96 6.53 86.86 0.57 4.52 16 21 C 0.10 1.43 5.12 85.56 0.44 1.86 16 22 C -0.09 -1.53 4.89 -19.86 -0.10 -1.63 16 23 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 26 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 27 C -0.12 -1.91 7.91 22.27 0.18 -1.73 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.54 5.89 -2.39 -0.01 1.52 16 30 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 31 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 32 H 0.13 1.72 7.93 -2.39 -0.02 1.71 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.36 18.87 6.54 -92.71 -0.61 18.27 16 38 H 0.24 15.20 6.77 -92.71 -0.63 14.57 16 39 H 0.05 2.04 8.00 -2.38 -0.02 2.03 16 40 H 0.06 2.21 8.04 -2.39 -0.02 2.20 16 41 H 0.06 0.70 8.06 -2.39 -0.02 0.68 16 42 H 0.10 1.15 7.87 -2.38 -0.02 1.13 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.13 1.64 7.98 -2.92 -0.02 1.62 16 Total: -1.00 -74.38 380.24 0.65 -73.72 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.49 Total: 32.05 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.41 Total: -2.52 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -8.26 Total: -134.43 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.04 Total: -21.83 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -74.38 0.65 -73.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661382092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.343 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds