Wall clock time and date at job start Tue Mar 31 2020 11:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99953 * 2 1 4 4 C 1.50701 * 109.47036 * 89.99982 * 3 2 1 5 5 O 1.21276 * 119.99987 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99898 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00177 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.49333 * 325.06398 * 7 6 4 9 9 C 1.53045 * 109.49825 * 205.00301 * 7 6 4 10 10 C 1.53044 * 109.53413 * 178.68130 * 9 7 6 11 11 C 1.53185 * 109.31421 * 61.36253 * 10 9 7 12 12 N 1.46925 * 108.77676 * 305.35921 * 11 10 9 13 13 C 1.36933 * 120.63232 * 233.58640 * 12 11 10 14 14 H 1.07995 * 120.00401 * 27.68812 * 13 12 11 15 15 C 1.38814 * 119.99974 * 207.68588 * 13 12 11 16 16 N 1.31618 * 120.00196 * 17.37377 * 15 13 12 17 17 Si 1.86801 * 120.00160 * 197.36694 * 15 13 12 18 18 H 1.48504 * 109.47125 * 90.00083 * 17 15 13 19 19 H 1.48495 * 109.47332 * 210.00112 * 17 15 13 20 20 H 1.48498 * 109.47218 * 330.00453 * 17 15 13 21 21 C 1.46929 * 118.73732 * 53.61472 * 12 11 10 22 22 C 1.39682 * 120.00154 * 179.97438 * 2 1 3 23 23 C 1.38912 * 120.07470 * 179.72184 * 22 2 1 24 24 C 1.38102 * 119.92250 * 179.76783 * 23 22 2 25 25 C 1.38284 * 120.07684 * 0.51261 * 24 23 22 26 26 C 1.38288 * 120.14875 * 359.74168 * 25 24 23 27 27 C 1.38107 * 120.07614 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46788 * 90.00313 * 1 2 3 29 29 H 1.09005 * 109.47079 * 209.99837 * 1 2 3 30 30 H 1.08992 * 109.47360 * 329.99678 * 1 2 3 31 31 H 1.08997 * 109.46969 * 329.99641 * 3 2 1 32 32 H 1.09003 * 109.46930 * 209.99748 * 3 2 1 33 33 H 0.97000 * 120.00520 * 0.27313 * 6 4 3 34 34 H 1.08999 * 109.45335 * 298.69600 * 9 7 6 35 35 H 1.08997 * 109.45935 * 58.67193 * 9 7 6 36 36 H 1.09000 * 109.49086 * 181.31599 * 10 9 7 37 37 H 1.08997 * 109.49804 * 301.37618 * 10 9 7 38 38 H 1.09007 * 109.58887 * 65.15156 * 11 10 9 39 39 H 1.09002 * 109.58584 * 185.57684 * 11 10 9 40 40 H 0.96995 * 120.00762 * 180.02562 * 16 15 13 41 41 H 1.08990 * 109.58595 * 186.60486 * 21 12 11 42 42 H 1.08997 * 109.58964 * 66.17037 * 21 12 11 43 43 H 1.08004 * 120.03829 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.96064 * 180.25305 * 24 23 22 45 45 H 1.07994 * 119.92969 * 179.76594 * 25 24 23 46 46 H 1.07997 * 119.96498 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.04090 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0541 1.0215 2.3426 6 7 3.1107 2.8515 1.6671 7 6 3.3553 3.2742 3.0483 8 1 2.5097 2.9850 3.6724 9 6 3.5280 4.7942 3.0944 10 6 3.7509 5.2402 4.5413 11 6 5.0299 4.5917 5.0801 12 7 4.9317 3.1362 4.9058 13 6 5.1185 2.2921 5.9678 14 1 4.8984 2.6285 6.9702 15 6 5.5907 1.0041 5.7560 16 7 6.1766 0.6967 4.6182 17 14 5.3947 -0.2931 7.0858 18 1 4.1035 -1.0024 6.8989 19 1 6.5120 -1.2670 6.9959 20 1 5.4126 0.3590 8.4198 21 6 4.6298 2.6033 3.5702 22 6 2.1634 -1.2097 0.0005 23 6 3.5525 -1.2115 -0.0053 24 6 4.2399 -2.4092 0.0001 25 6 3.5470 -3.6059 0.0006 26 6 2.1641 -3.6078 0.0011 27 6 1.4704 -2.4136 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 3.4221 3.3997 0.9299 34 1 4.3884 5.0803 2.4895 35 1 2.6317 5.2735 2.7007 36 1 3.8505 6.3251 4.5762 37 1 2.9017 4.9330 5.1517 38 1 5.8911 4.9686 4.5283 39 1 5.1405 4.8263 6.1388 40 1 6.5062 -0.2034 4.4700 41 1 4.4764 1.5261 3.6327 42 1 5.4583 2.8181 2.8953 43 1 4.0943 -0.2772 -0.0098 44 1 5.3199 -2.4113 -0.0003 45 1 4.0869 -4.5412 0.0010 46 1 1.6259 -4.5441 0.0019 47 1 0.3904 -2.4157 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690051818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:36 Heat of formation + Delta-G solvation = 27.270708 kcal Electronic energy + Delta-G solvation = -27337.711184 eV Core-core repulsion = 23714.266761 eV Total energy + Delta-G solvation = -3623.444422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.92043 -38.89501 -37.32070 -35.75477 -34.04857 -32.65897 -31.05611 -30.19787 -29.91348 -29.26209 -27.91443 -25.24684 -25.00848 -22.46200 -22.13845 -21.82021 -20.80446 -19.88475 -19.23687 -17.63588 -16.91213 -16.75073 -15.98884 -15.48222 -15.11935 -14.86838 -14.60719 -14.25328 -14.02538 -13.90663 -13.55873 -13.53430 -13.29967 -13.03207 -12.97951 -12.44425 -12.39561 -12.30191 -12.02433 -11.86033 -11.79406 -11.24764 -10.99342 -10.72999 -10.70361 -10.65366 -10.48003 -10.22587 -10.08834 -9.92717 -9.91588 -9.50602 -9.21851 -8.70554 -8.50569 -8.39635 -7.17816 -6.63488 -5.72523 -3.15797 1.65477 1.80713 2.99497 3.04883 3.45602 3.52212 3.53882 3.67981 4.12685 4.56994 4.90273 4.94331 5.05532 5.09962 5.21939 5.27085 5.36641 5.41731 5.43038 5.48549 5.55523 5.64469 5.65106 5.67439 5.70499 5.80694 5.91094 6.08842 6.14353 6.18567 6.33976 6.41278 6.42696 6.51022 6.67433 6.70759 6.78175 6.84408 6.95618 6.97391 7.01688 7.24731 7.33893 7.58526 7.75455 7.86051 7.97375 8.50916 8.70076 9.26079 9.90042 10.44544 11.35298 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004705 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.808654 B = 5949.088006 C = 7727.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.613 5.613 3 C 0.105 3.895 4 C 0.482 3.518 5 O -0.517 6.517 6 N -0.723 5.723 7 C 0.118 3.882 8 H 0.079 0.921 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.142 3.858 12 N -0.589 5.589 13 C -0.259 4.259 14 H 0.066 0.934 15 C 0.008 3.992 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.168 3.832 22 C 0.224 3.776 23 C -0.187 4.187 24 C -0.069 4.069 25 C -0.182 4.182 26 C -0.077 4.077 27 C -0.197 4.197 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.391 0.609 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.095 0.905 42 H 0.015 0.985 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 1.605 -14.493 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.323 5.323 3 C -0.023 4.023 4 C 0.265 3.735 5 O -0.391 6.391 6 N -0.375 5.375 7 C 0.012 3.988 8 H 0.097 0.903 9 C -0.153 4.153 10 C -0.171 4.171 11 C 0.016 3.984 12 N -0.312 5.312 13 C -0.388 4.388 14 H 0.084 0.916 15 C -0.191 4.191 16 N -0.541 5.541 17 Si 0.730 3.270 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.041 3.959 22 C 0.123 3.877 23 C -0.209 4.209 24 C -0.088 4.088 25 C -0.202 4.202 26 C -0.096 4.096 27 C -0.219 4.219 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.223 0.777 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.034 0.966 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.244 1.083 -13.832 16.672 hybrid contribution 0.131 -0.323 0.406 0.535 sum -9.113 0.760 -13.426 16.245 Atomic orbital electron populations 1.21577 0.79303 1.03038 1.00358 1.45878 1.04694 1.01928 1.79802 1.21306 0.99366 0.87030 0.94551 1.21324 0.78682 0.81372 0.92137 1.90760 1.50011 1.52574 1.45787 1.46117 1.58234 1.23847 1.09307 1.21941 1.02071 0.93758 0.80996 0.90292 1.21671 1.00389 0.95243 0.98019 1.22003 1.00945 0.98748 0.95403 1.20951 0.93254 0.85730 0.98468 1.43970 1.81153 0.99679 1.06350 1.19143 1.37982 0.94076 0.87601 0.91633 1.25011 0.97658 0.99222 0.97211 1.70000 1.39674 1.19453 1.24931 0.86326 0.77498 0.81840 0.81331 1.21277 1.21726 1.20424 1.21075 0.89778 0.99997 0.85041 1.17758 0.91169 0.85435 0.93318 1.20679 0.92120 0.98806 1.09311 1.20898 0.99592 0.91949 0.96343 1.20868 0.94245 0.97738 1.07314 1.20822 0.94249 0.96955 0.97587 1.20600 0.99377 0.91134 1.10835 0.93479 0.91294 0.91743 0.88231 0.87902 0.77656 0.92289 0.93226 0.92673 0.92196 0.96442 0.92661 0.93657 0.88736 0.96647 0.86350 0.86194 0.86737 0.86548 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.19 59.84 0.61 1.71 16 2 N -0.61 -8.33 2.50 -181.00 -0.45 -8.78 16 3 C 0.11 1.28 5.65 -5.19 -0.03 1.25 16 4 C 0.48 8.16 7.87 -10.99 -0.09 8.07 16 5 O -0.52 -11.67 16.09 5.56 0.09 -11.58 16 6 N -0.72 -11.32 5.08 -53.69 -0.27 -11.60 16 7 C 0.12 2.29 2.61 -67.81 -0.18 2.12 16 8 H 0.08 1.79 7.58 -51.92 -0.39 1.39 16 9 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 10 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 11 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 12 N -0.59 -15.17 2.99 -172.33 -0.52 -15.69 16 13 C -0.26 -7.40 9.59 -15.06 -0.14 -7.54 16 14 H 0.07 1.84 7.89 -52.49 -0.41 1.42 16 15 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 16 N -0.90 -27.13 11.19 55.49 0.62 -26.51 16 17 Si 0.90 23.10 29.59 -169.99 -5.03 18.07 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.17 4.13 4.89 -3.71 -0.02 4.12 16 22 C 0.22 3.42 6.55 -83.78 -0.55 2.87 16 23 C -0.19 -2.95 9.21 -39.38 -0.36 -3.32 16 24 C -0.07 -1.03 10.04 -39.61 -0.40 -1.43 16 25 C -0.18 -2.50 10.04 -39.55 -0.40 -2.90 16 26 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 27 C -0.20 -2.77 9.21 -39.38 -0.36 -3.13 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.76 6.20 -51.93 -0.32 0.44 16 30 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.10 0.85 8.07 -51.93 -0.42 0.44 16 32 H 0.10 1.11 6.19 -51.93 -0.32 0.79 16 33 H 0.39 4.56 8.60 -40.82 -0.35 4.21 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 2.77 6.04 -51.93 -0.31 2.46 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.12 1.82 6.14 -52.48 -0.32 1.50 16 44 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.42 6.14 -52.49 -0.32 1.10 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -35.53 375.80 -10.00 -45.52 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.37 Total: 5.76 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.73 Total: -0.86 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.62 Total: -62.58 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.53 -10.00 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690051818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.794 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds