Wall clock time and date at job start Tue Mar 31 2020 11:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99953 * 2 1 4 4 C 1.50701 * 109.47036 * 89.99982 * 3 2 1 5 5 O 1.21276 * 119.99987 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99898 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00177 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.49333 * 325.06398 * 7 6 4 9 9 C 1.53045 * 109.49825 * 205.00301 * 7 6 4 10 10 C 1.53044 * 109.53413 * 178.68130 * 9 7 6 11 11 C 1.53185 * 109.31421 * 61.36253 * 10 9 7 12 12 N 1.46925 * 108.77676 * 305.35921 * 11 10 9 13 13 C 1.36933 * 120.63232 * 233.58640 * 12 11 10 14 14 H 1.07995 * 120.00401 * 27.68812 * 13 12 11 15 15 C 1.38814 * 119.99974 * 207.68588 * 13 12 11 16 16 N 1.31618 * 120.00196 * 17.37377 * 15 13 12 17 17 Si 1.86801 * 120.00160 * 197.36694 * 15 13 12 18 18 H 1.48504 * 109.47125 * 90.00083 * 17 15 13 19 19 H 1.48495 * 109.47332 * 210.00112 * 17 15 13 20 20 H 1.48498 * 109.47218 * 330.00453 * 17 15 13 21 21 C 1.46929 * 118.73732 * 53.61472 * 12 11 10 22 22 C 1.39682 * 120.00154 * 179.97438 * 2 1 3 23 23 C 1.38912 * 120.07470 * 179.72184 * 22 2 1 24 24 C 1.38102 * 119.92250 * 179.76783 * 23 22 2 25 25 C 1.38284 * 120.07684 * 0.51261 * 24 23 22 26 26 C 1.38288 * 120.14875 * 359.74168 * 25 24 23 27 27 C 1.38107 * 120.07614 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46788 * 90.00313 * 1 2 3 29 29 H 1.09005 * 109.47079 * 209.99837 * 1 2 3 30 30 H 1.08992 * 109.47360 * 329.99678 * 1 2 3 31 31 H 1.08997 * 109.46969 * 329.99641 * 3 2 1 32 32 H 1.09003 * 109.46930 * 209.99748 * 3 2 1 33 33 H 0.97000 * 120.00520 * 0.27313 * 6 4 3 34 34 H 1.08999 * 109.45335 * 298.69600 * 9 7 6 35 35 H 1.08997 * 109.45935 * 58.67193 * 9 7 6 36 36 H 1.09000 * 109.49086 * 181.31599 * 10 9 7 37 37 H 1.08997 * 109.49804 * 301.37618 * 10 9 7 38 38 H 1.09007 * 109.58887 * 65.15156 * 11 10 9 39 39 H 1.09002 * 109.58584 * 185.57684 * 11 10 9 40 40 H 0.96995 * 120.00762 * 180.02562 * 16 15 13 41 41 H 1.08990 * 109.58595 * 186.60486 * 21 12 11 42 42 H 1.08997 * 109.58964 * 66.17037 * 21 12 11 43 43 H 1.08004 * 120.03829 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.96064 * 180.25305 * 24 23 22 45 45 H 1.07994 * 119.92969 * 179.76594 * 25 24 23 46 46 H 1.07997 * 119.96498 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.04090 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0541 1.0215 2.3426 6 7 3.1107 2.8515 1.6671 7 6 3.3553 3.2742 3.0483 8 1 2.5097 2.9850 3.6724 9 6 3.5280 4.7942 3.0944 10 6 3.7509 5.2402 4.5413 11 6 5.0299 4.5917 5.0801 12 7 4.9317 3.1362 4.9058 13 6 5.1185 2.2921 5.9678 14 1 4.8984 2.6285 6.9702 15 6 5.5907 1.0041 5.7560 16 7 6.1766 0.6967 4.6182 17 14 5.3947 -0.2931 7.0858 18 1 4.1035 -1.0024 6.8989 19 1 6.5120 -1.2670 6.9959 20 1 5.4126 0.3590 8.4198 21 6 4.6298 2.6033 3.5702 22 6 2.1634 -1.2097 0.0005 23 6 3.5525 -1.2115 -0.0053 24 6 4.2399 -2.4092 0.0001 25 6 3.5470 -3.6059 0.0006 26 6 2.1641 -3.6078 0.0011 27 6 1.4704 -2.4136 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 3.4221 3.3997 0.9299 34 1 4.3884 5.0803 2.4895 35 1 2.6317 5.2735 2.7007 36 1 3.8505 6.3251 4.5762 37 1 2.9017 4.9330 5.1517 38 1 5.8911 4.9686 4.5283 39 1 5.1405 4.8263 6.1388 40 1 6.5062 -0.2034 4.4700 41 1 4.4764 1.5261 3.6327 42 1 5.4583 2.8181 2.8953 43 1 4.0943 -0.2772 -0.0098 44 1 5.3199 -2.4113 -0.0003 45 1 4.0869 -4.5412 0.0010 46 1 1.6259 -4.5441 0.0019 47 1 0.3904 -2.4157 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690051818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:36 Heat of formation + Delta-G solvation = 4.108506 kcal Electronic energy + Delta-G solvation = -27338.715572 eV Core-core repulsion = 23714.266761 eV Total energy + Delta-G solvation = -3624.448811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18111 -40.15248 -38.91167 -36.86062 -35.75127 -34.44364 -32.20103 -31.90993 -31.26873 -30.53287 -29.11529 -27.26209 -26.06276 -24.00802 -23.73630 -23.08087 -22.01884 -21.32026 -20.76068 -18.79309 -18.68001 -18.17682 -17.34846 -16.90389 -16.51236 -16.19869 -16.02997 -15.78389 -15.37631 -15.32005 -15.11272 -14.78788 -14.60480 -14.34895 -14.27710 -14.11341 -13.98055 -13.48821 -13.44291 -12.97220 -12.93244 -12.84505 -12.73945 -12.47039 -12.29211 -12.26134 -12.06940 -11.71756 -11.71180 -11.61123 -11.27743 -11.22598 -10.59514 -10.53411 -10.04689 -9.81368 -8.71814 -8.23441 -7.92185 -5.37554 0.54723 0.70584 1.35591 1.41685 1.47083 1.71564 1.97385 2.41427 2.49642 3.01892 3.23999 3.69711 3.88238 3.91324 3.98495 4.04600 4.12628 4.15858 4.25418 4.28037 4.36191 4.42177 4.47903 4.61520 4.62228 4.64870 4.74188 4.80998 4.85821 4.90108 4.91581 5.07398 5.14711 5.19009 5.22385 5.32737 5.35223 5.48869 5.52020 5.59265 5.60608 5.74744 5.78503 5.96637 6.24298 6.33745 6.52508 6.72635 7.09288 7.42464 7.83029 8.31149 9.11796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004705 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.808654 B = 5949.088006 C = 7727.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.619 5.619 3 C 0.112 3.888 4 C 0.477 3.523 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.133 3.867 8 H 0.043 0.957 9 C -0.105 4.105 10 C -0.122 4.122 11 C 0.135 3.865 12 N -0.611 5.611 13 C -0.266 4.266 14 H 0.067 0.933 15 C -0.048 4.048 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.299 1.299 19 H -0.289 1.289 20 H -0.259 1.259 21 C 0.181 3.819 22 C 0.207 3.793 23 C -0.214 4.214 24 C -0.088 4.088 25 C -0.192 4.192 26 C -0.080 4.080 27 C -0.208 4.208 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.053 0.947 40 H 0.246 0.754 41 H 0.039 0.961 42 H -0.001 1.001 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 3.221 -15.846 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.328 5.328 3 C -0.015 4.015 4 C 0.263 3.737 5 O -0.460 6.460 6 N -0.362 5.362 7 C 0.026 3.974 8 H 0.062 0.938 9 C -0.143 4.143 10 C -0.162 4.162 11 C 0.010 3.990 12 N -0.335 5.335 13 C -0.396 4.396 14 H 0.085 0.915 15 C -0.244 4.244 16 N -0.571 5.571 17 Si 0.785 3.215 18 H -0.226 1.226 19 H -0.216 1.216 20 H -0.184 1.184 21 C 0.054 3.946 22 C 0.106 3.894 23 C -0.236 4.236 24 C -0.107 4.107 25 C -0.212 4.212 26 C -0.098 4.098 27 C -0.230 4.230 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.017 0.983 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.163 0.837 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.709 2.772 -15.219 18.815 hybrid contribution 0.595 -0.796 0.847 1.306 sum -10.114 1.976 -14.372 17.685 Atomic orbital electron populations 1.21746 0.77859 1.02822 1.02158 1.46133 1.05743 1.01746 1.79227 1.21484 1.01068 0.87725 0.91257 1.22339 0.77215 0.80511 0.93653 1.90733 1.52650 1.54374 1.48196 1.45927 1.57645 1.24048 1.08621 1.21418 0.97543 0.96134 0.82311 0.93819 1.21633 1.02908 0.91880 0.97882 1.21904 0.97876 1.00847 0.95540 1.21184 0.95758 0.83080 0.98969 1.44265 1.81632 1.01642 1.05944 1.19488 1.36639 0.94865 0.88630 0.91515 1.25735 0.98273 1.01142 0.99239 1.70151 1.41193 1.19132 1.26672 0.85423 0.76506 0.79514 0.80071 1.22630 1.21576 1.18361 1.20766 0.91660 0.97381 0.84802 1.18014 0.91212 0.86744 0.93455 1.20805 0.92910 0.98943 1.10980 1.21141 1.00188 0.92485 0.96856 1.21179 0.94899 0.98083 1.06991 1.21226 0.94254 0.98042 0.96295 1.20941 1.00505 0.91035 1.10523 0.90436 0.91923 0.91651 0.83472 0.86534 0.74830 0.90583 0.89445 0.88380 0.93294 0.95954 0.92805 0.94491 0.94211 0.98325 0.87015 0.85704 0.84731 0.83662 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 10.19 127.77 1.30 3.24 16 2 N -0.62 -16.20 2.50 -726.56 -1.81 -18.02 16 3 C 0.11 2.55 5.65 85.63 0.48 3.03 16 4 C 0.48 16.14 7.87 87.66 0.69 16.83 16 5 O -0.58 -27.26 16.09 -3.02 -0.05 -27.31 16 6 N -0.71 -21.54 5.08 -442.16 -2.25 -23.79 16 7 C 0.13 5.14 2.61 45.07 0.12 5.26 16 8 H 0.04 2.02 7.58 -2.38 -0.02 2.00 16 9 C -0.11 -3.02 5.35 30.62 0.16 -2.85 16 10 C -0.12 -3.81 6.08 30.67 0.19 -3.62 16 11 C 0.13 5.53 6.52 86.36 0.56 6.10 16 12 N -0.61 -32.18 2.99 -699.12 -2.09 -34.27 16 13 C -0.27 -15.64 9.59 84.03 0.81 -14.83 16 14 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 16 N -0.93 -58.73 11.19 21.65 0.24 -58.49 16 17 Si 0.96 49.07 29.59 68.60 2.03 51.10 16 18 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 19 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.18 9.22 4.89 86.36 0.42 9.64 16 22 C 0.21 6.33 6.55 38.21 0.25 6.58 16 23 C -0.21 -7.00 9.21 22.40 0.21 -6.79 16 24 C -0.09 -2.72 10.04 22.25 0.22 -2.49 16 25 C -0.19 -5.24 10.04 22.29 0.22 -5.02 16 26 C -0.08 -2.04 10.04 22.25 0.22 -1.81 16 27 C -0.21 -5.69 9.21 22.40 0.21 -5.48 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.32 6.20 -2.38 -0.01 1.31 16 30 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 31 H 0.15 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.12 2.37 6.19 -2.39 -0.01 2.36 16 33 H 0.41 8.59 8.60 -92.71 -0.80 7.80 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.05 2.17 7.93 -2.39 -0.02 2.16 16 40 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.04 2.46 6.04 -2.39 -0.01 2.45 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.11 3.62 6.14 -2.91 -0.02 3.60 16 44 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 46 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.14 3.11 6.14 -2.91 -0.02 3.09 16 Total: -1.00 -83.69 375.80 2.72 -80.97 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.17 Total: 24.51 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.48 Total: 5.28 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -5.91 Total: -134.56 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -83.69 2.72 -80.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690051818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.081 kcal (2) G-P(sol) polarization free energy of solvation -83.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds