Wall clock time and date at job start Tue Mar 31 2020 11:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00295 * 2 1 4 4 H 1.07999 * 120.00254 * 202.42983 * 3 2 1 5 5 C 1.38815 * 119.99591 * 22.42773 * 3 2 1 6 6 N 1.31616 * 120.00130 * 13.77073 * 5 3 2 7 7 Si 1.86806 * 119.99763 * 193.76906 * 5 3 2 8 8 H 1.48501 * 109.46744 * 60.00098 * 7 5 3 9 9 H 1.48503 * 109.47052 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46997 * 299.99872 * 7 5 3 11 11 C 1.46505 * 119.99826 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47263 * 90.00125 * 11 2 1 13 13 H 1.09002 * 109.49447 * 305.05889 * 12 11 2 14 14 C 1.53041 * 109.49375 * 185.00178 * 12 11 2 15 15 C 1.53049 * 109.53528 * 178.64880 * 14 12 11 16 16 C 1.53190 * 109.30982 * 61.36379 * 15 14 12 17 17 N 1.46931 * 108.77697 * 305.35997 * 16 15 14 18 18 C 1.34770 * 120.63135 * 233.58823 * 17 16 15 19 19 O 1.21283 * 119.99727 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00357 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47452 * 179.97438 * 20 18 17 22 22 C 1.38672 * 120.41735 * 89.99982 * 21 20 18 23 23 C 1.38626 * 118.42187 * 179.97438 * 22 21 20 24 24 C 1.38224 * 119.16411 * 0.02562 * 23 22 21 25 25 N 1.31859 * 120.76313 * 359.97438 * 24 23 22 26 26 C 1.31893 * 121.72210 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.73365 * 53.86791 * 17 16 15 28 28 H 1.08997 * 109.47047 * 275.13293 * 1 2 3 29 29 H 1.09004 * 109.46871 * 35.12967 * 1 2 3 30 30 H 1.08995 * 109.47183 * 155.12386 * 1 2 3 31 31 H 0.97003 * 119.99834 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47238 * 329.99409 * 11 2 1 33 33 H 1.08998 * 109.46576 * 209.99766 * 11 2 1 34 34 H 1.08992 * 109.46663 * 58.62860 * 14 12 11 35 35 H 1.09000 * 109.45885 * 298.66762 * 14 12 11 36 36 H 1.08997 * 109.49701 * 301.41108 * 15 14 12 37 37 H 1.08999 * 109.52101 * 181.32796 * 15 14 12 38 38 H 1.09006 * 109.58299 * 185.58005 * 16 15 14 39 39 H 1.09000 * 109.59047 * 65.15234 * 16 15 14 40 40 H 1.09003 * 109.46612 * 59.99963 * 20 18 17 41 41 H 1.08996 * 109.47412 * 299.99767 * 20 18 17 42 42 H 1.08001 * 120.78728 * 359.70643 * 22 21 20 43 43 H 1.08008 * 120.42289 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.62181 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.61661 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.59011 * 65.92164 * 27 17 16 47 47 H 1.09002 * 109.58912 * 186.35151 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1685 1.2213 -0.3569 5 6 1.5344 2.3426 0.4587 6 7 0.4098 2.2647 1.1381 7 14 2.3025 4.0097 0.1116 8 1 2.4009 4.2134 -1.3560 9 1 1.4567 5.0772 0.7035 10 1 3.6600 4.0636 0.7111 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5065 -1.7532 -1.9830 14 6 3.1061 -3.0936 -1.4463 15 6 3.3309 -3.5503 -2.8896 16 6 4.2748 -2.5681 -3.5905 17 7 3.7237 -1.2118 -3.4657 18 6 3.5319 -0.4454 -4.5575 19 8 3.0767 0.6727 -4.4411 20 6 3.8829 -0.9776 -5.9230 21 6 3.5747 0.0675 -6.9640 22 6 4.5376 0.9935 -7.3357 23 6 4.2098 1.9362 -8.2978 24 6 2.9429 1.9223 -8.8503 25 7 2.0521 1.0265 -8.4725 26 6 2.3294 0.1144 -7.5610 27 6 3.3916 -0.7048 -2.1273 28 1 -0.3633 0.0919 1.0235 29 1 -0.3633 0.8405 -0.5914 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0203 3.0730 1.4582 32 1 1.6085 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 2.4546 -3.8042 -0.9379 35 1 4.0636 -3.0441 -0.9278 36 1 2.3767 -3.5763 -3.4158 37 1 3.7748 -4.5458 -2.8917 38 1 4.3599 -2.8323 -4.6447 39 1 5.2578 -2.6078 -3.1212 40 1 3.2974 -1.8747 -6.1247 41 1 4.9447 -1.2216 -5.9559 42 1 5.5183 0.9833 -6.8833 43 1 4.9349 2.6729 -8.6111 44 1 2.6795 2.6536 -9.6001 45 1 1.5741 -0.6035 -7.2773 46 1 4.3040 -0.5957 -1.5410 47 1 2.8938 0.2609 -2.2155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752506378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:52 Heat of formation + Delta-G solvation = 19.455281 kcal Electronic energy + Delta-G solvation = -27156.920228 eV Core-core repulsion = 23533.136904 eV Total energy + Delta-G solvation = -3623.783325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54616 -39.63824 -37.51106 -35.46563 -33.70668 -32.91434 -31.97579 -31.58290 -30.16267 -28.28634 -25.95397 -25.64744 -24.94221 -23.65094 -22.63417 -22.35165 -20.85260 -19.68463 -18.80433 -17.17834 -17.11283 -16.58432 -16.53430 -15.80539 -15.11774 -14.92826 -14.83014 -14.46258 -14.13277 -13.76730 -13.60153 -13.48320 -13.18738 -13.13130 -13.04948 -12.99704 -12.54748 -12.35000 -12.07448 -11.68562 -11.67922 -11.14136 -11.01323 -10.80139 -10.73607 -10.55528 -10.33892 -10.24544 -10.12052 -9.93437 -9.84859 -9.63925 -9.54009 -9.51005 -8.99534 -8.43876 -8.35340 -6.65351 -5.63648 -3.09332 1.01801 1.22293 2.81577 3.18362 3.46402 3.51661 3.57506 3.77267 4.31139 4.56025 4.58074 4.64808 4.67364 4.80491 4.87427 4.91264 4.95916 5.08565 5.19501 5.24366 5.37183 5.41076 5.46939 5.53889 5.59598 5.67227 5.76666 5.82531 5.91633 6.00245 6.11023 6.12533 6.14039 6.20403 6.32233 6.49751 6.59689 6.62458 6.77148 6.84059 6.89810 7.01391 7.46437 7.64849 7.79499 7.88504 7.90666 8.41362 8.47986 9.32257 9.96477 10.44751 11.41035 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.004373 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.775561 B = 6401.118865 C = 8215.774283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.601 5.601 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.897 3.103 8 H -0.282 1.282 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.158 3.842 12 C -0.119 4.119 13 H 0.065 0.935 14 C -0.114 4.114 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.612 5.612 18 C 0.509 3.491 19 O -0.523 6.523 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.062 4.062 23 C -0.172 4.172 24 C 0.094 3.906 25 N -0.484 5.484 26 C 0.114 3.886 27 C 0.122 3.878 28 H 0.030 0.970 29 H 0.039 0.961 30 H -0.005 1.005 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.058 0.942 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -12.103 -15.923 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.324 5.324 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.727 3.273 8 H -0.208 1.208 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.030 3.970 12 C -0.142 4.142 13 H 0.084 0.916 14 C -0.153 4.153 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.346 5.346 18 C 0.295 3.705 19 O -0.398 6.398 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.088 4.088 23 C -0.192 4.192 24 C -0.063 4.063 25 N -0.193 5.193 26 C -0.043 4.043 27 C 0.001 3.999 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.076 0.924 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.792 -11.308 -16.145 21.583 hybrid contribution 1.252 0.883 0.322 1.565 sum 10.044 -10.425 -15.824 21.447 Atomic orbital electron populations 1.20758 0.82765 0.95257 0.99275 1.43876 1.01776 1.00626 1.86099 1.19099 0.97882 0.85465 1.35653 0.91420 1.24955 0.97871 0.98339 0.98225 1.70060 1.19551 1.27066 1.38597 0.86441 0.78342 0.84181 0.78323 1.20826 1.21683 1.21018 1.20710 0.96108 0.88588 0.91600 1.22323 0.98121 0.92933 1.00789 0.91642 1.21558 1.00918 0.97477 0.95319 1.21902 0.99894 0.97983 0.97343 1.21723 0.96950 0.82196 1.00864 1.48301 1.63735 1.14924 1.07668 1.20381 0.78784 0.85760 0.85545 1.90801 1.43593 1.19236 1.86160 1.20645 1.03933 0.98035 0.91192 1.20322 0.95607 0.97955 0.97703 1.21423 0.99402 0.93051 0.94954 1.22091 0.98587 0.99958 0.98553 1.22740 0.89599 0.95952 0.98030 1.67682 1.34841 1.03594 1.13146 1.22589 0.94299 0.95745 0.91683 1.21965 0.98245 1.00102 0.79605 0.95195 0.94190 0.98636 0.93831 0.94338 0.93507 0.91994 0.92084 0.91704 0.91231 0.90379 0.91509 0.87844 0.88045 0.85078 0.84847 0.82908 0.83067 0.92404 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 8.98 59.85 0.54 4.71 16 2 N -0.60 -15.21 2.82 -181.12 -0.51 -15.72 16 3 C -0.25 -6.99 8.25 -15.06 -0.12 -7.11 16 4 H 0.07 1.84 6.80 -52.49 -0.36 1.48 16 5 C 0.00 0.13 5.09 -17.43 -0.09 0.04 16 6 N -0.91 -27.28 10.72 55.49 0.59 -26.69 16 7 Si 0.90 23.05 29.58 -169.99 -5.03 18.03 16 8 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 9 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.16 3.17 5.15 -4.04 -0.02 3.15 16 12 C -0.12 -2.01 2.56 -90.28 -0.23 -2.24 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.11 -1.41 5.17 -26.69 -0.14 -1.55 16 15 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 16 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 17 N -0.61 -8.82 2.97 -172.50 -0.51 -9.34 16 18 C 0.51 7.88 7.69 -10.99 -0.08 7.79 16 19 O -0.52 -11.03 15.45 5.55 0.09 -10.94 16 20 C -0.10 -1.01 4.20 -29.04 -0.12 -1.13 16 21 C -0.11 -1.38 4.39 -104.48 -0.46 -1.84 16 22 C -0.06 -0.71 9.86 -39.28 -0.39 -1.09 16 23 C -0.17 -1.82 10.11 -39.44 -0.40 -2.22 16 24 C 0.09 1.09 11.18 -17.54 -0.20 0.90 16 25 N -0.48 -6.78 10.36 -13.25 -0.14 -6.92 16 26 C 0.11 1.50 10.86 -17.55 -0.19 1.31 16 27 C 0.12 2.19 4.70 -3.49 -0.02 2.17 16 28 H 0.03 0.82 7.35 -51.93 -0.38 0.43 16 29 H 0.04 1.11 7.32 -51.93 -0.38 0.73 16 30 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.82 7.64 -51.93 -0.40 0.42 16 41 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 44 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.11 2.65 5.41 -51.93 -0.28 2.37 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -35.26 373.85 -9.53 -44.79 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.55 Total: -1.27 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.10 Total: 2.42 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.56 Total: -58.66 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.26 -9.53 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752506378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.250 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds