Wall clock time and date at job start Tue Mar 31 2020 11:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 120.00295 * 2 1 4 4 H 1.07999 * 120.00254 * 202.42983 * 3 2 1 5 5 C 1.38815 * 119.99591 * 22.42773 * 3 2 1 6 6 N 1.31616 * 120.00130 * 13.77073 * 5 3 2 7 7 Si 1.86806 * 119.99763 * 193.76906 * 5 3 2 8 8 H 1.48501 * 109.46744 * 60.00098 * 7 5 3 9 9 H 1.48503 * 109.47052 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46997 * 299.99872 * 7 5 3 11 11 C 1.46505 * 119.99826 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47263 * 90.00125 * 11 2 1 13 13 H 1.09002 * 109.49447 * 305.05889 * 12 11 2 14 14 C 1.53041 * 109.49375 * 185.00178 * 12 11 2 15 15 C 1.53049 * 109.53528 * 178.64880 * 14 12 11 16 16 C 1.53190 * 109.30982 * 61.36379 * 15 14 12 17 17 N 1.46931 * 108.77697 * 305.35997 * 16 15 14 18 18 C 1.34770 * 120.63135 * 233.58823 * 17 16 15 19 19 O 1.21283 * 119.99727 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00357 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47452 * 179.97438 * 20 18 17 22 22 C 1.38672 * 120.41735 * 89.99982 * 21 20 18 23 23 C 1.38626 * 118.42187 * 179.97438 * 22 21 20 24 24 C 1.38224 * 119.16411 * 0.02562 * 23 22 21 25 25 N 1.31859 * 120.76313 * 359.97438 * 24 23 22 26 26 C 1.31893 * 121.72210 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.73365 * 53.86791 * 17 16 15 28 28 H 1.08997 * 109.47047 * 275.13293 * 1 2 3 29 29 H 1.09004 * 109.46871 * 35.12967 * 1 2 3 30 30 H 1.08995 * 109.47183 * 155.12386 * 1 2 3 31 31 H 0.97003 * 119.99834 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47238 * 329.99409 * 11 2 1 33 33 H 1.08998 * 109.46576 * 209.99766 * 11 2 1 34 34 H 1.08992 * 109.46663 * 58.62860 * 14 12 11 35 35 H 1.09000 * 109.45885 * 298.66762 * 14 12 11 36 36 H 1.08997 * 109.49701 * 301.41108 * 15 14 12 37 37 H 1.08999 * 109.52101 * 181.32796 * 15 14 12 38 38 H 1.09006 * 109.58299 * 185.58005 * 16 15 14 39 39 H 1.09000 * 109.59047 * 65.15234 * 16 15 14 40 40 H 1.09003 * 109.46612 * 59.99963 * 20 18 17 41 41 H 1.08996 * 109.47412 * 299.99767 * 20 18 17 42 42 H 1.08001 * 120.78728 * 359.70643 * 22 21 20 43 43 H 1.08008 * 120.42289 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.62181 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.61661 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.59011 * 65.92164 * 27 17 16 47 47 H 1.09002 * 109.58912 * 186.35151 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1685 1.2213 -0.3569 5 6 1.5344 2.3426 0.4587 6 7 0.4098 2.2647 1.1381 7 14 2.3025 4.0097 0.1116 8 1 2.4009 4.2134 -1.3560 9 1 1.4567 5.0772 0.7035 10 1 3.6600 4.0636 0.7111 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5065 -1.7532 -1.9830 14 6 3.1061 -3.0936 -1.4463 15 6 3.3309 -3.5503 -2.8896 16 6 4.2748 -2.5681 -3.5905 17 7 3.7237 -1.2118 -3.4657 18 6 3.5319 -0.4454 -4.5575 19 8 3.0767 0.6727 -4.4411 20 6 3.8829 -0.9776 -5.9230 21 6 3.5747 0.0675 -6.9640 22 6 4.5376 0.9935 -7.3357 23 6 4.2098 1.9362 -8.2978 24 6 2.9429 1.9223 -8.8503 25 7 2.0521 1.0265 -8.4725 26 6 2.3294 0.1144 -7.5610 27 6 3.3916 -0.7048 -2.1273 28 1 -0.3633 0.0919 1.0235 29 1 -0.3633 0.8405 -0.5914 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0203 3.0730 1.4582 32 1 1.6085 -2.0286 0.5130 33 1 3.1499 -1.1386 0.5133 34 1 2.4546 -3.8042 -0.9379 35 1 4.0636 -3.0441 -0.9278 36 1 2.3767 -3.5763 -3.4158 37 1 3.7748 -4.5458 -2.8917 38 1 4.3599 -2.8323 -4.6447 39 1 5.2578 -2.6078 -3.1212 40 1 3.2974 -1.8747 -6.1247 41 1 4.9447 -1.2216 -5.9559 42 1 5.5183 0.9833 -6.8833 43 1 4.9349 2.6729 -8.6111 44 1 2.6795 2.6536 -9.6001 45 1 1.5741 -0.6035 -7.2773 46 1 4.3040 -0.5957 -1.5410 47 1 2.8938 0.2609 -2.2155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752506378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:52 Heat of formation + Delta-G solvation = -3.159815 kcal Electronic energy + Delta-G solvation = -27157.900892 eV Core-core repulsion = 23533.136904 eV Total energy + Delta-G solvation = -3624.763989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55088 -40.67965 -38.84789 -37.19018 -34.78096 -34.24848 -33.07659 -32.83505 -31.74701 -29.30813 -27.98889 -27.24601 -26.06868 -24.52898 -24.05763 -23.33414 -22.29823 -21.08836 -19.92273 -18.71119 -18.08440 -18.02779 -17.45305 -17.00418 -16.88246 -16.20619 -15.89706 -15.71775 -15.42486 -15.07547 -14.97796 -14.83455 -14.51942 -14.25073 -14.03916 -13.96888 -13.88231 -13.75823 -13.39488 -13.08601 -12.85199 -12.78865 -12.60700 -12.49027 -12.26971 -12.10622 -12.03621 -11.82940 -11.64112 -11.57198 -11.19527 -10.96426 -10.66358 -10.60423 -10.42814 -9.90218 -9.54009 -8.75150 -7.83506 -5.29507 0.14168 0.35256 1.36269 1.42196 1.47795 1.67916 2.10822 2.47470 2.87340 3.29625 3.47922 3.64365 3.69392 3.80232 3.90076 3.97473 4.03160 4.08328 4.10853 4.18235 4.23315 4.44375 4.46106 4.52329 4.57845 4.69901 4.76248 4.80597 4.83426 4.85991 4.88575 4.95947 5.05875 5.06926 5.16765 5.22244 5.23320 5.29146 5.37119 5.47919 5.58735 5.61532 5.67658 5.68588 5.78218 6.32346 6.54315 7.01588 7.15044 7.27361 7.88371 8.31229 9.19490 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.004373 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.775561 B = 6401.118865 C = 8215.774283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.618 5.618 3 C -0.243 4.243 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.952 3.048 8 H -0.296 1.296 9 H -0.290 1.290 10 H -0.269 1.269 11 C 0.154 3.846 12 C -0.105 4.105 13 H 0.042 0.958 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.501 3.499 19 O -0.593 6.593 20 C -0.083 4.083 21 C -0.124 4.124 22 C -0.074 4.074 23 C -0.172 4.172 24 C 0.078 3.922 25 N -0.517 5.517 26 C 0.090 3.910 27 C 0.128 3.872 28 H 0.008 0.992 29 H 0.004 0.996 30 H 0.027 0.973 31 H 0.246 0.754 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.156 0.844 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 -14.866 -17.335 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.374 4.374 4 H 0.086 0.914 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.781 3.219 8 H -0.223 1.223 9 H -0.216 1.216 10 H -0.194 1.194 11 C 0.028 3.972 12 C -0.127 4.127 13 H 0.061 0.939 14 C -0.147 4.147 15 C -0.166 4.166 16 C -0.023 4.023 17 N -0.342 5.342 18 C 0.290 3.710 19 O -0.473 6.473 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.079 4.079 25 N -0.226 5.226 26 C -0.067 4.067 27 C 0.005 3.995 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.181 0.819 44 H 0.193 0.807 45 H 0.174 0.826 46 H 0.076 0.924 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.594 -14.159 -17.563 25.364 hybrid contribution 0.432 1.680 0.722 1.879 sum 12.026 -12.479 -16.841 24.166 Atomic orbital electron populations 1.20464 0.83312 0.95313 0.97454 1.44120 1.01867 1.01946 1.86182 1.19370 0.97850 0.86636 1.33516 0.91371 1.25611 0.98807 1.01216 0.99189 1.70196 1.20892 1.27163 1.40348 0.85568 0.78316 0.80981 0.77043 1.22330 1.21635 1.19429 1.20968 0.95660 0.86577 0.94026 1.22045 0.97370 0.95689 0.97554 0.93933 1.21530 1.01086 0.94126 0.97967 1.21906 1.00044 0.99725 0.94898 1.22162 0.97336 0.79060 1.03724 1.48381 1.63152 1.16808 1.05905 1.21340 0.77343 0.84890 0.87400 1.90776 1.46813 1.22458 1.87279 1.20689 1.06708 0.98095 0.86791 1.20547 0.95362 0.98818 0.97950 1.21833 1.00293 0.92859 0.95041 1.22462 0.98710 1.00142 0.97825 1.23231 0.89990 0.96005 0.98643 1.67650 1.36173 1.04633 1.14158 1.22827 0.95244 0.96279 0.92337 1.21521 0.97796 0.98047 0.82091 0.97407 0.97691 0.95442 0.94485 0.92822 0.93407 0.90929 0.90937 0.92318 0.87364 0.86510 0.89694 0.84769 0.84183 0.82994 0.81914 0.80684 0.82633 0.92397 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.46 8.98 127.77 1.15 10.61 16 2 N -0.62 -32.04 2.82 -726.94 -2.05 -34.09 16 3 C -0.24 -13.94 8.25 84.03 0.69 -13.25 16 4 H 0.07 3.83 6.80 -2.91 -0.02 3.81 16 5 C -0.05 -3.20 5.09 84.86 0.43 -2.77 16 6 N -0.94 -58.60 10.72 21.65 0.23 -58.37 16 7 Si 0.95 49.11 29.58 68.60 2.03 51.14 16 8 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 9 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 10 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 11 C 0.15 6.09 5.15 86.38 0.44 6.54 16 12 C -0.10 -3.43 2.56 -10.57 -0.03 -3.46 16 13 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 14 C -0.11 -2.30 5.17 30.62 0.16 -2.14 16 15 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 16 C 0.10 1.43 6.34 86.36 0.55 1.98 16 17 N -0.61 -16.43 2.97 -818.06 -2.43 -18.86 16 18 C 0.50 14.99 7.69 87.66 0.67 15.66 16 19 O -0.59 -25.91 15.45 -3.04 -0.05 -25.96 16 20 C -0.08 -1.45 4.20 29.10 0.12 -1.33 16 21 C -0.12 -2.86 4.39 -19.77 -0.09 -2.95 16 22 C -0.07 -1.56 9.86 22.47 0.22 -1.33 16 23 C -0.17 -3.38 10.11 22.36 0.23 -3.15 16 24 C 0.08 1.77 11.18 84.69 0.95 2.72 16 25 N -0.52 -14.61 10.36 -195.84 -2.03 -16.64 16 26 C 0.09 2.36 10.86 84.67 0.92 3.28 16 27 C 0.13 4.62 4.70 86.51 0.41 5.02 16 28 H 0.01 0.44 7.35 -2.39 -0.02 0.42 16 29 H 0.00 0.25 7.32 -2.38 -0.02 0.23 16 30 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.05 1.95 8.07 -2.39 -0.02 1.94 16 33 H 0.05 1.87 8.04 -2.39 -0.02 1.86 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.86 5.93 -2.38 -0.01 0.85 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.13 1.53 7.64 -2.39 -0.02 1.51 16 41 H 0.14 1.38 7.90 -2.39 -0.02 1.37 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 45 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 2.70 5.41 -2.39 -0.01 2.69 16 Total: -1.00 -84.01 373.85 3.66 -80.34 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.94 Total: 8.70 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.01 Total: 13.73 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.27 Total: -127.96 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.14 kcal Total: -84.01 3.66 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752506378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.182 kcal (2) G-P(sol) polarization free energy of solvation -84.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds