Wall clock time and date at job start Tue Mar 31 2020 11:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00456 * 2 1 4 4 H 1.07997 * 120.00168 * 202.18378 * 3 2 1 5 5 C 1.38811 * 119.99447 * 22.17878 * 3 2 1 6 6 N 1.31622 * 120.00321 * 11.51755 * 5 3 2 7 7 Si 1.86804 * 119.99679 * 191.51089 * 5 3 2 8 8 H 1.48491 * 109.47085 * 60.00429 * 7 5 3 9 9 H 1.48502 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47326 * 300.00157 * 7 5 3 11 11 C 1.46500 * 119.99885 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47602 * 270.00325 * 11 2 1 13 13 H 1.09005 * 109.49891 * 54.93406 * 12 11 2 14 14 C 1.53040 * 109.50212 * 174.99822 * 12 11 2 15 15 C 1.53035 * 109.52865 * 181.32514 * 14 12 11 16 16 C 1.53196 * 109.31136 * 298.61345 * 15 14 12 17 17 N 1.46919 * 108.76401 * 54.65846 * 16 15 14 18 18 C 1.34774 * 120.63238 * 126.40396 * 17 16 15 19 19 O 1.21283 * 120.00125 * 179.97438 * 18 17 16 20 20 C 1.50703 * 120.00043 * 359.97438 * 18 17 16 21 21 C 1.50698 * 109.47255 * 180.02562 * 20 18 17 22 22 C 1.38667 * 120.41832 * 89.99726 * 21 20 18 23 23 C 1.38637 * 118.42119 * 179.97438 * 22 21 20 24 24 C 1.38229 * 119.15978 * 0.02562 * 23 22 21 25 25 N 1.31858 * 120.76391 * 359.97438 * 24 23 22 26 26 C 1.31892 * 121.72183 * 359.70516 * 25 24 23 27 27 C 1.46931 * 118.73976 * 306.37976 * 17 16 15 28 28 H 1.08992 * 109.46893 * 274.23074 * 1 2 3 29 29 H 1.09003 * 109.46501 * 34.22625 * 1 2 3 30 30 H 1.08994 * 109.46817 * 154.22425 * 1 2 3 31 31 H 0.97000 * 120.00025 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47085 * 150.00217 * 11 2 1 33 33 H 1.09008 * 109.46971 * 30.00912 * 11 2 1 34 34 H 1.09000 * 109.45831 * 301.34002 * 14 12 11 35 35 H 1.09001 * 109.46055 * 61.30865 * 14 12 11 36 36 H 1.08993 * 109.49973 * 58.58245 * 15 14 12 37 37 H 1.09001 * 109.49549 * 178.67884 * 15 14 12 38 38 H 1.09006 * 109.59974 * 294.86603 * 16 15 14 39 39 H 1.09002 * 109.70340 * 174.50913 * 16 15 14 40 40 H 1.08999 * 109.46826 * 299.99806 * 20 18 17 41 41 H 1.09003 * 109.46764 * 59.99680 * 20 18 17 42 42 H 1.08000 * 120.79147 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.41917 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.61799 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.61524 * 180.30977 * 26 25 24 46 46 H 1.08997 * 109.58601 * 293.82727 * 27 17 16 47 47 H 1.09004 * 109.58769 * 173.39184 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1698 1.2204 -0.3531 5 6 1.5328 2.3435 0.4538 6 7 0.3831 2.2703 1.0905 7 14 2.3342 4.0053 0.1610 8 1 2.4889 4.2299 -1.2986 9 1 1.4815 5.0748 0.7392 10 1 3.6694 4.0323 0.8103 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4432 13 1 1.5065 -1.7532 1.9830 14 6 3.1061 -3.0937 1.4463 15 6 3.3313 -3.5498 2.8896 16 6 4.2758 -2.5677 3.5898 17 7 3.7247 -1.2115 3.4649 18 6 3.5333 -0.4448 4.5567 19 8 3.0781 0.6733 4.4402 20 6 3.8850 -0.9768 5.9221 21 6 3.5772 0.0686 6.9631 22 6 2.3274 0.1165 7.5618 23 6 2.0894 1.0950 8.5147 24 6 3.0984 1.9843 8.8335 25 7 4.2752 1.9089 8.2435 26 6 4.5389 0.9875 7.3374 27 6 3.3867 -0.7067 2.1271 28 1 -0.3633 0.0758 1.0248 29 1 -0.3632 0.8497 -0.5781 30 1 -0.3633 -0.9254 -0.4469 31 1 -0.0478 3.0793 1.4080 32 1 3.1500 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5131 34 1 2.4542 -3.8044 0.9384 35 1 4.0635 -3.0443 0.9275 36 1 2.3773 -3.5755 3.4161 37 1 3.7753 -4.5453 2.8915 38 1 5.2586 -2.6075 3.1201 39 1 4.3638 -2.8307 4.6440 40 1 3.2996 -1.8737 6.1244 41 1 4.9468 -1.2209 5.9545 42 1 1.5577 -0.5915 7.2924 43 1 1.1277 1.1616 9.0017 44 1 2.9209 2.7497 9.5744 45 1 5.5164 0.9538 6.8792 46 1 4.2969 -0.5949 1.5380 47 1 2.8856 0.2572 2.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752506379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:56 Heat of formation + Delta-G solvation = 20.616613 kcal Electronic energy + Delta-G solvation = -27415.044824 eV Core-core repulsion = 23791.311859 eV Total energy + Delta-G solvation = -3623.732966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42191 -39.50596 -37.38824 -35.42170 -33.58952 -32.81533 -31.87262 -31.46801 -30.14986 -28.17422 -25.93171 -25.54479 -24.83099 -23.55274 -22.55390 -22.24456 -20.79025 -19.61141 -18.65029 -17.07892 -16.92887 -16.60132 -16.43723 -15.69763 -14.94099 -14.82437 -14.74973 -14.36334 -14.05965 -13.74304 -13.51230 -13.39245 -13.12070 -13.03224 -12.92679 -12.87890 -12.52203 -12.24211 -11.93650 -11.62674 -11.46938 -11.23190 -10.88953 -10.80561 -10.68600 -10.51155 -10.30642 -10.12815 -9.90301 -9.88338 -9.81109 -9.63036 -9.45855 -9.39981 -8.88420 -8.41351 -8.19057 -6.65208 -5.62312 -3.06968 1.11593 1.32532 2.99018 3.33584 3.48341 3.53230 3.54059 3.87459 4.40927 4.60168 4.65510 4.76869 4.77851 4.91180 4.97636 5.01205 5.05367 5.16929 5.29193 5.35430 5.46436 5.50762 5.55580 5.60774 5.67160 5.76691 5.81405 5.93110 6.02915 6.10972 6.18856 6.22376 6.24594 6.28729 6.39813 6.56259 6.65286 6.70878 6.80955 6.97941 7.11420 7.16426 7.46125 7.81150 7.83457 7.89834 7.99052 8.49542 8.60081 9.33973 9.97432 10.46023 11.42761 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.004831 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.361001 B = 5794.280300 C = 7629.827073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.602 5.602 3 C -0.257 4.257 4 H 0.066 0.934 5 C 0.009 3.991 6 N -0.901 5.901 7 Si 0.899 3.101 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.159 3.841 12 C -0.118 4.118 13 H 0.064 0.936 14 C -0.115 4.115 15 C -0.132 4.132 16 C 0.106 3.894 17 N -0.613 5.613 18 C 0.506 3.494 19 O -0.514 6.514 20 C -0.097 4.097 21 C -0.112 4.112 22 C -0.061 4.061 23 C -0.171 4.171 24 C 0.092 3.908 25 N -0.486 5.486 26 C 0.112 3.888 27 C 0.125 3.875 28 H 0.026 0.974 29 H 0.044 0.956 30 H -0.007 1.007 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.053 0.947 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -13.121 11.404 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.324 5.324 3 C -0.386 4.386 4 H 0.083 0.917 5 C -0.190 4.190 6 N -0.545 5.545 7 Si 0.730 3.270 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.031 3.969 12 C -0.141 4.141 13 H 0.083 0.917 14 C -0.154 4.154 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.347 5.347 18 C 0.293 3.707 19 O -0.389 6.389 20 C -0.138 4.138 21 C -0.114 4.114 22 C -0.087 4.087 23 C -0.190 4.190 24 C -0.064 4.064 25 N -0.194 5.194 26 C -0.045 4.045 27 C 0.004 3.996 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.168 0.832 46 H 0.071 0.929 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.808 -11.720 11.618 17.851 hybrid contribution -0.360 0.200 -0.297 0.508 sum 6.448 -11.520 11.321 17.391 Atomic orbital electron populations 1.20765 0.82683 0.95322 0.99119 1.43936 1.01809 1.00625 1.86035 1.19021 0.97727 0.85312 1.36558 0.91669 1.24959 0.97534 0.98303 0.98166 1.70035 1.17709 1.27053 1.39742 0.86415 0.78837 0.84257 0.77541 1.21223 1.21701 1.20884 1.20829 0.95733 0.88335 0.92033 1.22235 0.98300 0.92680 1.00855 0.91714 1.21593 1.00758 0.97750 0.95278 1.21893 0.99863 0.97900 0.97422 1.21692 0.96848 0.82465 1.00713 1.48294 1.63792 1.14776 1.07851 1.20355 0.79021 0.85915 0.85454 1.90839 1.42992 1.19049 1.86003 1.20652 1.03864 0.97887 0.91413 1.20322 0.95297 0.98354 0.97439 1.21438 0.95771 0.97523 0.93929 1.22093 1.00773 0.96753 0.99427 1.22717 0.88725 0.97320 0.97677 1.67664 1.22093 1.21196 1.08438 1.22557 0.99146 0.89687 0.93135 1.21805 0.97916 1.00530 0.79332 0.95576 0.93752 0.98820 0.93781 0.93891 0.94300 0.92241 0.92245 0.91812 0.91419 0.91659 0.90529 0.88137 0.88026 0.85050 0.84842 0.82960 0.83151 0.92898 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.17 9.01 59.85 0.54 4.71 16 2 N -0.60 -15.08 2.82 -181.12 -0.51 -15.59 16 3 C -0.26 -7.06 7.78 -15.06 -0.12 -7.18 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 6 N -0.90 -27.22 10.58 55.49 0.59 -26.63 16 7 Si 0.90 23.08 29.57 -169.99 -5.03 18.05 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 10 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 11 C 0.16 3.18 5.21 -4.04 -0.02 3.16 16 12 C -0.12 -2.12 2.54 -90.50 -0.23 -2.36 16 13 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.12 -1.51 5.17 -26.69 -0.14 -1.65 16 15 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 16 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 17 N -0.61 -9.81 2.97 -172.76 -0.51 -10.32 16 18 C 0.51 8.73 7.69 -10.98 -0.08 8.65 16 19 O -0.51 -11.99 15.45 5.56 0.09 -11.91 16 20 C -0.10 -1.14 4.20 -29.03 -0.12 -1.27 16 21 C -0.11 -1.51 4.39 -104.49 -0.46 -1.97 16 22 C -0.06 -0.78 9.86 -39.28 -0.39 -1.17 16 23 C -0.17 -2.04 10.11 -39.44 -0.40 -2.44 16 24 C 0.09 1.18 11.18 -17.54 -0.20 0.98 16 25 N -0.49 -7.24 10.36 -13.25 -0.14 -7.38 16 26 C 0.11 1.58 10.86 -17.55 -0.19 1.39 16 27 C 0.12 2.45 5.09 -3.71 -0.02 2.44 16 28 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.20 7.18 -51.93 -0.37 0.83 16 30 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 31 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.04 0.71 7.86 -51.92 -0.41 0.30 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 40 H 0.10 0.93 7.65 -51.93 -0.40 0.53 16 41 H 0.10 0.90 7.89 -51.93 -0.41 0.49 16 42 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.12 3.18 5.61 -51.93 -0.29 2.89 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -35.16 374.52 -9.56 -44.72 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.59 Total: 0.39 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.10 Total: 3.01 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.57 Total: -59.92 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.16 -9.56 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752506379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.339 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds