Wall clock time and date at job start Tue Mar 31 2020 11:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 120.00456 * 2 1 4 4 H 1.07997 * 120.00168 * 202.18378 * 3 2 1 5 5 C 1.38811 * 119.99447 * 22.17878 * 3 2 1 6 6 N 1.31622 * 120.00321 * 11.51755 * 5 3 2 7 7 Si 1.86804 * 119.99679 * 191.51089 * 5 3 2 8 8 H 1.48491 * 109.47085 * 60.00429 * 7 5 3 9 9 H 1.48502 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47326 * 300.00157 * 7 5 3 11 11 C 1.46500 * 119.99885 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47602 * 270.00325 * 11 2 1 13 13 H 1.09005 * 109.49891 * 54.93406 * 12 11 2 14 14 C 1.53040 * 109.50212 * 174.99822 * 12 11 2 15 15 C 1.53035 * 109.52865 * 181.32514 * 14 12 11 16 16 C 1.53196 * 109.31136 * 298.61345 * 15 14 12 17 17 N 1.46919 * 108.76401 * 54.65846 * 16 15 14 18 18 C 1.34774 * 120.63238 * 126.40396 * 17 16 15 19 19 O 1.21283 * 120.00125 * 179.97438 * 18 17 16 20 20 C 1.50703 * 120.00043 * 359.97438 * 18 17 16 21 21 C 1.50698 * 109.47255 * 180.02562 * 20 18 17 22 22 C 1.38667 * 120.41832 * 89.99726 * 21 20 18 23 23 C 1.38637 * 118.42119 * 179.97438 * 22 21 20 24 24 C 1.38229 * 119.15978 * 0.02562 * 23 22 21 25 25 N 1.31858 * 120.76391 * 359.97438 * 24 23 22 26 26 C 1.31892 * 121.72183 * 359.70516 * 25 24 23 27 27 C 1.46931 * 118.73976 * 306.37976 * 17 16 15 28 28 H 1.08992 * 109.46893 * 274.23074 * 1 2 3 29 29 H 1.09003 * 109.46501 * 34.22625 * 1 2 3 30 30 H 1.08994 * 109.46817 * 154.22425 * 1 2 3 31 31 H 0.97000 * 120.00025 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47085 * 150.00217 * 11 2 1 33 33 H 1.09008 * 109.46971 * 30.00912 * 11 2 1 34 34 H 1.09000 * 109.45831 * 301.34002 * 14 12 11 35 35 H 1.09001 * 109.46055 * 61.30865 * 14 12 11 36 36 H 1.08993 * 109.49973 * 58.58245 * 15 14 12 37 37 H 1.09001 * 109.49549 * 178.67884 * 15 14 12 38 38 H 1.09006 * 109.59974 * 294.86603 * 16 15 14 39 39 H 1.09002 * 109.70340 * 174.50913 * 16 15 14 40 40 H 1.08999 * 109.46826 * 299.99806 * 20 18 17 41 41 H 1.09003 * 109.46764 * 59.99680 * 20 18 17 42 42 H 1.08000 * 120.79147 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.41917 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.61799 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.61524 * 180.30977 * 26 25 24 46 46 H 1.08997 * 109.58601 * 293.82727 * 27 17 16 47 47 H 1.09004 * 109.58769 * 173.39184 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1698 1.2204 -0.3531 5 6 1.5328 2.3435 0.4538 6 7 0.3831 2.2703 1.0905 7 14 2.3342 4.0053 0.1610 8 1 2.4889 4.2299 -1.2986 9 1 1.4815 5.0748 0.7392 10 1 3.6694 4.0323 0.8103 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4432 13 1 1.5065 -1.7532 1.9830 14 6 3.1061 -3.0937 1.4463 15 6 3.3313 -3.5498 2.8896 16 6 4.2758 -2.5677 3.5898 17 7 3.7247 -1.2115 3.4649 18 6 3.5333 -0.4448 4.5567 19 8 3.0781 0.6733 4.4402 20 6 3.8850 -0.9768 5.9221 21 6 3.5772 0.0686 6.9631 22 6 2.3274 0.1165 7.5618 23 6 2.0894 1.0950 8.5147 24 6 3.0984 1.9843 8.8335 25 7 4.2752 1.9089 8.2435 26 6 4.5389 0.9875 7.3374 27 6 3.3867 -0.7067 2.1271 28 1 -0.3633 0.0758 1.0248 29 1 -0.3632 0.8497 -0.5781 30 1 -0.3633 -0.9254 -0.4469 31 1 -0.0478 3.0793 1.4080 32 1 3.1500 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5131 34 1 2.4542 -3.8044 0.9384 35 1 4.0635 -3.0443 0.9275 36 1 2.3773 -3.5755 3.4161 37 1 3.7753 -4.5453 2.8915 38 1 5.2586 -2.6075 3.1201 39 1 4.3638 -2.8307 4.6440 40 1 3.2996 -1.8737 6.1244 41 1 4.9468 -1.2209 5.9545 42 1 1.5577 -0.5915 7.2924 43 1 1.1277 1.1616 9.0017 44 1 2.9209 2.7497 9.5744 45 1 5.5164 0.9538 6.8792 46 1 4.2969 -0.5949 1.5380 47 1 2.8856 0.2572 2.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752506379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:55 Heat of formation + Delta-G solvation = -2.204806 kcal Electronic energy + Delta-G solvation = -27416.034435 eV Core-core repulsion = 23791.311859 eV Total energy + Delta-G solvation = -3624.722577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53522 -40.66594 -38.82192 -37.17377 -34.76556 -34.22913 -33.03477 -32.83870 -31.76555 -29.29633 -27.96087 -27.18911 -26.05054 -24.53963 -24.03447 -23.33104 -22.28547 -21.06925 -19.87291 -18.69532 -18.10687 -18.03923 -17.44741 -16.93213 -16.84295 -16.17912 -15.87667 -15.76224 -15.42916 -15.05652 -14.99389 -14.78418 -14.49294 -14.23895 -14.02383 -13.98189 -13.89994 -13.71896 -13.15292 -13.09528 -13.01262 -12.80744 -12.59653 -12.46190 -12.23841 -12.07720 -12.01308 -11.81992 -11.59551 -11.51644 -11.20512 -10.94326 -10.64376 -10.57789 -10.44681 -9.90506 -9.50757 -8.73886 -7.82291 -5.25982 0.13391 0.33593 1.38086 1.41468 1.46001 1.71365 2.14501 2.49314 2.86761 3.34048 3.47072 3.66737 3.70024 3.81761 3.88835 3.99330 4.04793 4.08355 4.09983 4.19749 4.25790 4.44206 4.47047 4.50076 4.62388 4.71754 4.74840 4.80697 4.85413 4.86945 4.90636 4.98404 5.07288 5.12928 5.15455 5.24980 5.28566 5.30009 5.35650 5.55412 5.58702 5.66243 5.70329 5.74602 5.77071 6.33814 6.58256 6.99744 7.17431 7.32532 7.91263 8.33488 9.21484 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.004831 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.361001 B = 5794.280300 C = 7629.827073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.618 5.618 3 C -0.242 4.242 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.951 3.049 8 H -0.269 1.269 9 H -0.300 1.300 10 H -0.286 1.286 11 C 0.153 3.847 12 C -0.105 4.105 13 H 0.031 0.969 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.497 3.503 19 O -0.591 6.591 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.077 4.077 23 C -0.173 4.173 24 C 0.079 3.921 25 N -0.515 5.515 26 C 0.091 3.909 27 C 0.132 3.868 28 H -0.008 1.008 29 H 0.016 0.984 30 H 0.031 0.969 31 H 0.241 0.759 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.161 0.839 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -16.616 11.829 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.341 5.341 3 C -0.373 4.373 4 H 0.086 0.914 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.781 3.219 8 H -0.195 1.195 9 H -0.227 1.227 10 H -0.213 1.213 11 C 0.026 3.974 12 C -0.127 4.127 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.166 4.166 16 C -0.023 4.023 17 N -0.344 5.344 18 C 0.286 3.714 19 O -0.471 6.471 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.103 4.103 23 C -0.192 4.192 24 C -0.077 4.077 25 N -0.224 5.224 26 C -0.065 4.065 27 C 0.010 3.990 28 H 0.011 0.989 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.179 0.821 44 H 0.195 0.805 45 H 0.178 0.822 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.575 -15.307 12.022 21.269 hybrid contribution -0.866 1.204 -0.453 1.551 sum 7.709 -14.102 11.569 19.803 Atomic orbital electron populations 1.20466 0.83123 0.95862 0.96909 1.44185 1.01964 1.01890 1.86013 1.19262 0.97520 0.86311 1.34198 0.91387 1.25617 0.98407 1.01328 0.99172 1.70215 1.19276 1.26747 1.41931 0.85573 0.77439 0.80878 0.78027 1.19488 1.22654 1.21302 1.21085 0.95868 0.86638 0.93776 1.21966 0.96897 0.95572 0.98268 0.95001 1.21547 1.01122 0.94193 0.97796 1.21902 0.99820 0.99701 0.95149 1.22154 0.97367 0.79169 1.03646 1.48392 1.63120 1.16807 1.06089 1.21380 0.77510 0.85000 0.87493 1.90811 1.46521 1.22505 1.87236 1.20683 1.06641 0.98017 0.86846 1.20551 0.95440 0.98852 0.97827 1.21810 0.96069 0.98233 0.94203 1.22452 1.01744 0.95980 0.99020 1.23226 0.88400 0.98103 0.98013 1.67653 1.23410 1.21946 1.09356 1.22849 1.00114 0.90032 0.93508 1.21332 0.97508 0.98319 0.81877 0.98941 0.96504 0.95109 0.94970 0.93050 0.91952 0.90744 0.90772 0.92672 0.87229 0.89706 0.86705 0.84766 0.84309 0.83665 0.82078 0.80489 0.82155 0.92820 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.40 9.01 127.77 1.15 10.55 16 2 N -0.62 -31.54 2.82 -726.94 -2.05 -33.59 16 3 C -0.24 -13.73 7.78 84.03 0.65 -13.08 16 4 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 5 C -0.05 -3.02 5.13 84.86 0.44 -2.58 16 6 N -0.93 -59.72 10.58 21.65 0.23 -59.49 16 7 Si 0.95 49.33 29.57 68.60 2.03 51.35 16 8 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 9 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 10 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 11 C 0.15 5.94 5.21 86.38 0.45 6.39 16 12 C -0.11 -3.69 2.54 -10.72 -0.03 -3.71 16 13 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 14 C -0.11 -2.43 5.17 30.62 0.16 -2.27 16 15 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 16 C 0.10 1.69 6.34 86.37 0.55 2.24 16 17 N -0.61 -18.81 2.97 -818.89 -2.43 -21.24 16 18 C 0.50 17.03 7.69 87.66 0.67 17.70 16 19 O -0.59 -29.07 15.45 -3.04 -0.05 -29.11 16 20 C -0.08 -1.72 4.20 29.10 0.12 -1.60 16 21 C -0.12 -3.26 4.39 -19.78 -0.09 -3.35 16 22 C -0.08 -1.94 9.86 22.47 0.22 -1.72 16 23 C -0.17 -3.99 10.11 22.36 0.23 -3.76 16 24 C 0.08 1.98 11.18 84.69 0.95 2.93 16 25 N -0.51 -15.46 10.36 -195.83 -2.03 -17.49 16 26 C 0.09 2.58 10.86 84.67 0.92 3.50 16 27 C 0.13 5.27 5.09 86.36 0.44 5.71 16 28 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 29 H 0.02 0.92 7.18 -2.39 -0.02 0.91 16 30 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 31 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 33 H 0.06 2.14 7.86 -2.38 -0.02 2.12 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.11 1.16 5.93 -2.39 -0.01 1.15 16 40 H 0.13 1.91 7.65 -2.39 -0.02 1.89 16 41 H 0.14 1.86 7.89 -2.39 -0.02 1.85 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 45 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 3.00 5.61 -2.39 -0.01 2.98 16 Total: -1.00 -85.55 374.52 3.66 -81.90 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.94 Total: 12.64 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 7.02 Total: 15.03 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -6.28 Total: -131.81 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.35 kcal Total: -85.55 3.66 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752506379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.690 kcal (2) G-P(sol) polarization free energy of solvation -85.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds