Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99486 * 2 1 4 4 C 1.39704 * 120.00750 * 180.02562 * 2 1 3 5 5 C 1.39030 * 120.00100 * 354.48388 * 4 2 1 6 6 C 1.38198 * 120.21811 * 180.02562 * 5 4 2 7 7 C 1.38021 * 120.22997 * 359.97438 * 6 5 4 8 8 C 1.39575 * 120.00583 * 0.02562 * 7 6 5 9 9 C 1.47859 * 120.11356 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99529 * 8.09611 * 9 8 7 11 11 N 1.34777 * 120.00237 * 188.09309 * 9 8 7 12 12 C 1.47023 * 125.64719 * 354.86495 * 11 9 8 13 13 C 1.54320 * 107.26879 * 178.90610 * 12 11 9 14 14 C 1.55158 * 102.94641 * 337.80680 * 13 12 11 15 15 H 1.08996 * 111.00569 * 277.39523 * 14 13 12 16 16 C 1.52996 * 111.00654 * 153.57171 * 14 13 12 17 17 N 1.46505 * 109.47188 * 175.00203 * 16 14 13 18 18 C 1.36933 * 119.99904 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00404 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00114 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99779 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46993 * 90.00148 * 22 20 18 24 24 H 1.48498 * 109.46844 * 209.99835 * 22 20 18 25 25 H 1.48500 * 109.47267 * 330.00293 * 22 20 18 26 26 C 1.47428 * 125.64599 * 174.56078 * 11 9 8 27 27 C 1.38633 * 120.00869 * 174.49983 * 4 2 1 28 28 H 1.08997 * 109.47495 * 269.99274 * 1 2 3 29 29 H 1.08993 * 109.47627 * 30.00404 * 1 2 3 30 30 H 1.09006 * 109.46389 * 150.00162 * 1 2 3 31 31 H 1.08998 * 109.47181 * 185.04017 * 3 2 1 32 32 H 1.09000 * 109.47255 * 305.04610 * 3 2 1 33 33 H 1.09003 * 109.46797 * 65.03909 * 3 2 1 34 34 H 1.08007 * 119.89061 * 0.03839 * 5 4 2 35 35 H 1.08008 * 119.88078 * 179.71586 * 6 5 4 36 36 H 1.08001 * 119.99716 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.88415 * 298.32215 * 12 11 9 38 38 H 1.09000 * 109.87755 * 59.49057 * 12 11 9 39 39 H 1.08999 * 110.72186 * 96.17027 * 13 12 11 40 40 H 1.09000 * 110.72056 * 219.26957 * 13 12 11 41 41 H 1.09002 * 109.47561 * 295.00533 * 16 14 13 42 42 H 1.09001 * 109.46592 * 55.00479 * 16 14 13 43 43 H 0.96998 * 119.99692 * 0.02562 * 17 16 14 44 44 H 0.97004 * 119.99843 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.36851 * 323.00395 * 26 11 9 46 46 H 1.09002 * 110.36173 * 85.32786 * 26 11 9 47 47 H 1.08005 * 120.10673 * 359.95934 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1637 -1.2098 -0.0005 5 6 1.4736 -2.4112 0.1147 6 6 2.1602 -3.6105 0.1152 7 6 3.5356 -3.6238 0.0008 8 6 4.2380 -2.4233 -0.1154 9 6 5.7115 -2.4347 -0.2375 10 8 6.3009 -3.4875 -0.3849 11 7 6.4011 -1.2779 -0.1854 12 6 5.8129 0.0680 -0.1184 13 6 6.9801 1.0750 -0.0476 14 6 8.1514 0.2121 0.4918 15 1 8.1061 0.1267 1.5775 16 6 9.5007 0.7781 0.0449 17 7 10.5825 0.0115 0.6682 18 6 11.8878 0.3384 0.4140 19 1 12.1198 1.1609 -0.2462 20 6 12.9128 -0.3883 1.0042 21 7 14.1674 -0.0745 0.7595 22 14 12.5114 -1.8115 2.1457 23 1 12.4117 -3.0657 1.3568 24 1 13.5860 -1.9496 3.1612 25 1 11.2176 -1.5506 2.8262 26 6 7.8700 -1.1527 -0.1799 27 6 3.5452 -1.2125 -0.1156 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5139 31 1 3.2656 1.0718 -0.0903 32 1 1.8680 1.8785 -0.8413 33 1 2.0034 1.8003 0.9317 34 1 0.3972 -2.4072 0.2039 35 1 1.6190 -4.5404 0.2096 36 1 4.0685 -4.5632 0.0020 37 1 5.2148 0.2559 -1.0100 38 1 5.1918 0.1570 0.7728 39 1 7.2132 1.4655 -1.0381 40 1 6.7473 1.8874 0.6408 41 1 9.5833 0.7071 -1.0397 42 1 9.5746 1.8227 0.3473 43 1 10.3741 -0.7275 1.2609 44 1 14.8836 -0.5821 1.1723 45 1 8.3174 -1.9605 0.3992 46 1 8.2549 -1.1576 -1.1997 47 1 4.0832 -0.2803 -0.2056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752959759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = 49.716401 kcal Electronic energy + Delta-G solvation = -26473.033712 eV Core-core repulsion = 22850.562608 eV Total energy + Delta-G solvation = -3622.471104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79045 -39.26808 -37.79216 -36.25453 -34.96477 -32.71785 -31.50796 -30.74767 -30.30229 -29.02368 -28.67031 -25.96883 -25.09350 -24.28645 -22.49713 -21.83466 -21.45345 -20.24966 -19.81996 -17.78591 -17.36048 -17.01390 -16.37740 -15.96379 -15.57491 -15.48648 -15.35706 -14.74714 -14.41090 -14.20289 -13.97904 -13.79543 -13.74796 -13.12611 -13.00926 -12.98077 -12.75568 -12.61468 -12.51734 -12.38649 -12.28255 -11.99994 -11.76555 -11.74659 -11.08948 -10.95990 -10.72657 -10.63119 -10.39072 -10.20460 -10.11055 -9.89556 -9.57908 -9.19753 -8.89384 -8.68902 -7.63028 -7.23631 -5.75956 -3.11976 0.73014 1.30809 2.71122 2.81471 2.91329 3.40857 3.44711 3.49130 3.74188 4.23766 4.37948 4.46327 4.54340 4.61365 4.74184 4.79177 4.85335 4.88510 4.90398 5.08835 5.11045 5.14907 5.18456 5.22326 5.27201 5.34305 5.36192 5.44674 5.54736 5.57129 5.73537 5.76029 5.80013 5.85383 5.87469 6.10611 6.12141 6.19725 6.24793 6.37562 6.48168 6.58105 6.69106 6.83228 7.10311 7.45785 7.99011 8.12935 8.42796 9.21403 9.93989 10.12911 11.42270 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002855 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.137378 B = 9806.179596 C =10791.844413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.640 5.640 3 C 0.087 3.913 4 C 0.204 3.796 5 C -0.176 4.176 6 C -0.082 4.082 7 C -0.118 4.118 8 C -0.080 4.080 9 C 0.569 3.431 10 O -0.533 6.533 11 N -0.612 5.612 12 C 0.091 3.909 13 C -0.128 4.128 14 C -0.110 4.110 15 H 0.085 0.915 16 C 0.170 3.830 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.883 3.117 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.113 3.887 27 C -0.203 4.203 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.556 2.037 -1.656 32.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.353 5.353 3 C -0.056 4.056 4 C 0.103 3.897 5 C -0.199 4.199 6 C -0.100 4.100 7 C -0.139 4.139 8 C -0.084 4.084 9 C 0.358 3.642 10 O -0.411 6.411 11 N -0.345 5.345 12 C -0.031 4.031 13 C -0.166 4.166 14 C -0.130 4.130 15 H 0.104 0.896 16 C 0.042 3.958 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.008 4.008 27 C -0.225 4.225 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -32.163 1.698 -1.842 32.261 hybrid contribution -0.270 -0.975 0.880 1.341 sum -32.434 0.723 -0.962 32.456 Atomic orbital electron populations 1.21595 0.79423 1.02615 1.01153 1.46268 1.04961 1.02983 1.81083 1.21739 0.97554 0.84925 1.01341 1.17731 0.91032 0.85909 0.95003 1.20871 0.99815 0.91265 1.07931 1.20864 0.93756 0.97467 0.97934 1.21056 0.93873 0.97557 1.01408 1.19640 0.92275 0.93961 1.02504 1.18033 0.86755 0.82477 0.76905 1.90794 1.70637 1.30161 1.49468 1.48411 1.08103 1.05315 1.72680 1.22561 0.96842 0.82749 1.00961 1.22738 0.93760 0.97205 1.02915 1.22615 0.95823 0.93801 1.00747 0.89648 1.20563 0.84359 0.94673 0.96186 1.42726 1.02757 1.38079 1.56678 1.19033 0.80741 1.13696 1.24073 0.89164 1.24668 0.95042 0.99162 1.00158 1.69702 0.97939 1.42642 1.47855 0.86573 0.77199 0.83648 0.81270 1.20890 1.21700 1.20352 1.22361 0.78378 0.98337 1.01770 1.22272 0.93039 0.99928 1.07227 0.93419 0.91490 0.91408 0.90628 0.92354 0.92693 0.85831 0.85457 0.85025 0.90726 0.90644 0.89860 0.89604 0.95076 0.94892 0.80607 0.93038 0.90170 0.90558 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 10.10 59.85 0.60 1.07 16 2 N -0.64 -4.68 3.41 -187.59 -0.64 -5.32 16 3 C 0.09 0.48 10.62 59.85 0.64 1.11 16 4 C 0.20 1.93 6.53 -83.83 -0.55 1.38 16 5 C -0.18 -1.55 9.16 -39.30 -0.36 -1.91 16 6 C -0.08 -0.77 10.02 -39.68 -0.40 -1.16 16 7 C -0.12 -1.42 9.59 -39.16 -0.38 -1.79 16 8 C -0.08 -1.04 5.87 -104.99 -0.62 -1.66 16 9 C 0.57 8.95 7.81 -12.32 -0.10 8.86 16 10 O -0.53 -10.36 16.67 5.32 0.09 -10.27 16 11 N -0.61 -8.55 3.33 -175.16 -0.58 -9.13 16 12 C 0.09 0.90 4.71 -3.07 -0.01 0.88 16 13 C -0.13 -1.27 6.42 -24.90 -0.16 -1.43 16 14 C -0.11 -1.57 3.03 -88.59 -0.27 -1.84 16 15 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 16 C 0.17 3.08 5.72 -4.04 -0.02 3.06 16 17 N -0.76 -17.83 5.35 -59.91 -0.32 -18.15 16 18 C -0.25 -6.97 10.47 -15.06 -0.16 -7.12 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 22 Si 0.88 22.62 27.74 -169.99 -4.71 17.91 16 23 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 26 C 0.11 1.78 6.30 -2.64 -0.02 1.76 16 27 C -0.20 -2.13 7.86 -38.97 -0.31 -2.44 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 30 H 0.07 0.30 6.44 -51.93 -0.33 -0.03 16 31 H 0.08 0.40 4.99 -51.93 -0.26 0.15 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.12 0.81 6.28 -52.48 -0.33 0.48 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.63 7.67 -52.49 -0.40 1.22 16 37 H 0.07 0.61 6.72 -51.93 -0.35 0.26 16 38 H 0.08 0.65 6.59 -51.93 -0.34 0.31 16 39 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.57 7.96 -51.93 -0.41 0.16 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.44 5.53 -40.82 -0.23 8.22 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 46 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 47 H 0.16 1.42 0.59 -56.90 -0.03 1.39 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -35.61 369.08 -8.93 -44.54 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.91 Total: 4.83 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.20 Total: -1.17 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.77 Total: -61.40 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.61 -8.93 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752959759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.260 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds