Wall clock time and date at job start Tue Mar 31 2020 11:30:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46505 * 119.99486 * 2 1
4 4 C 1.39704 * 120.00750 * 180.02562 * 2 1 3
5 5 C 1.39030 * 120.00100 * 354.48388 * 4 2 1
6 6 C 1.38198 * 120.21811 * 180.02562 * 5 4 2
7 7 C 1.38021 * 120.22997 * 359.97438 * 6 5 4
8 8 C 1.39575 * 120.00583 * 0.02562 * 7 6 5
9 9 C 1.47859 * 120.11356 * 179.97438 * 8 7 6
10 10 O 1.21555 * 119.99529 * 8.09611 * 9 8 7
11 11 N 1.34777 * 120.00237 * 188.09309 * 9 8 7
12 12 C 1.47023 * 125.64719 * 354.86495 * 11 9 8
13 13 C 1.54320 * 107.26879 * 178.90610 * 12 11 9
14 14 C 1.55158 * 102.94641 * 337.80680 * 13 12 11
15 15 H 1.08996 * 111.00569 * 277.39523 * 14 13 12
16 16 C 1.52996 * 111.00654 * 153.57171 * 14 13 12
17 17 N 1.46505 * 109.47188 * 175.00203 * 16 14 13
18 18 C 1.36933 * 119.99904 * 180.02562 * 17 16 14
19 19 H 1.08002 * 120.00404 * 359.97438 * 18 17 16
20 20 C 1.38814 * 120.00002 * 180.02562 * 18 17 16
21 21 N 1.31618 * 120.00114 * 179.97438 * 20 18 17
22 22 Si 1.86801 * 119.99779 * 359.97438 * 20 18 17
23 23 H 1.48499 * 109.46993 * 90.00148 * 22 20 18
24 24 H 1.48498 * 109.46844 * 209.99835 * 22 20 18
25 25 H 1.48500 * 109.47267 * 330.00293 * 22 20 18
26 26 C 1.47428 * 125.64599 * 174.56078 * 11 9 8
27 27 C 1.38633 * 120.00869 * 174.49983 * 4 2 1
28 28 H 1.08997 * 109.47495 * 269.99274 * 1 2 3
29 29 H 1.08993 * 109.47627 * 30.00404 * 1 2 3
30 30 H 1.09006 * 109.46389 * 150.00162 * 1 2 3
31 31 H 1.08998 * 109.47181 * 185.04017 * 3 2 1
32 32 H 1.09000 * 109.47255 * 305.04610 * 3 2 1
33 33 H 1.09003 * 109.46797 * 65.03909 * 3 2 1
34 34 H 1.08007 * 119.89061 * 0.03839 * 5 4 2
35 35 H 1.08008 * 119.88078 * 179.71586 * 6 5 4
36 36 H 1.08001 * 119.99716 * 179.97438 * 7 6 5
37 37 H 1.08998 * 109.88415 * 298.32215 * 12 11 9
38 38 H 1.09000 * 109.87755 * 59.49057 * 12 11 9
39 39 H 1.08999 * 110.72186 * 96.17027 * 13 12 11
40 40 H 1.09000 * 110.72056 * 219.26957 * 13 12 11
41 41 H 1.09002 * 109.47561 * 295.00533 * 16 14 13
42 42 H 1.09001 * 109.46592 * 55.00479 * 16 14 13
43 43 H 0.96998 * 119.99692 * 0.02562 * 17 16 14
44 44 H 0.97004 * 119.99843 * 179.97438 * 21 20 18
45 45 H 1.08999 * 110.36851 * 323.00395 * 26 11 9
46 46 H 1.09002 * 110.36173 * 85.32786 * 26 11 9
47 47 H 1.08005 * 120.10673 * 359.95934 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.1637 -1.2098 -0.0005
5 6 1.4736 -2.4112 0.1147
6 6 2.1602 -3.6105 0.1152
7 6 3.5356 -3.6238 0.0008
8 6 4.2380 -2.4233 -0.1154
9 6 5.7115 -2.4347 -0.2375
10 8 6.3009 -3.4875 -0.3849
11 7 6.4011 -1.2779 -0.1854
12 6 5.8129 0.0680 -0.1184
13 6 6.9801 1.0750 -0.0476
14 6 8.1514 0.2121 0.4918
15 1 8.1061 0.1267 1.5775
16 6 9.5007 0.7781 0.0449
17 7 10.5825 0.0115 0.6682
18 6 11.8878 0.3384 0.4140
19 1 12.1198 1.1609 -0.2462
20 6 12.9128 -0.3883 1.0042
21 7 14.1674 -0.0745 0.7595
22 14 12.5114 -1.8115 2.1457
23 1 12.4117 -3.0657 1.3568
24 1 13.5860 -1.9496 3.1612
25 1 11.2176 -1.5506 2.8262
26 6 7.8700 -1.1527 -0.1799
27 6 3.5452 -1.2125 -0.1156
28 1 -0.3634 -0.0001 1.0276
29 1 -0.3634 0.8899 -0.5138
30 1 -0.3632 -0.8901 -0.5139
31 1 3.2656 1.0718 -0.0903
32 1 1.8680 1.8785 -0.8413
33 1 2.0034 1.8003 0.9317
34 1 0.3972 -2.4072 0.2039
35 1 1.6190 -4.5404 0.2096
36 1 4.0685 -4.5632 0.0020
37 1 5.2148 0.2559 -1.0100
38 1 5.1918 0.1570 0.7728
39 1 7.2132 1.4655 -1.0381
40 1 6.7473 1.8874 0.6408
41 1 9.5833 0.7071 -1.0397
42 1 9.5746 1.8227 0.3473
43 1 10.3741 -0.7275 1.2609
44 1 14.8836 -0.5821 1.1723
45 1 8.3174 -1.9605 0.3992
46 1 8.2549 -1.1576 -1.1997
47 1 4.0832 -0.2803 -0.2056
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752959759.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:14
Heat of formation + Delta-G solvation = 25.867701 kcal
Electronic energy + Delta-G solvation = -26474.067869 eV
Core-core repulsion = 22850.562608 eV
Total energy + Delta-G solvation = -3623.505261 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.76209 -40.10171 -38.95772 -36.92090 -36.67842 -34.24951 -32.90972 -32.00072
-30.99998 -30.20046 -29.13360 -27.41497 -25.71547 -25.48931 -23.88848 -22.95707
-22.36505 -21.48630 -20.71976 -19.64138 -18.43118 -17.85739 -17.46643 -16.82814
-16.59960 -16.37145 -16.21274 -15.94646 -15.77773 -15.52809 -14.97632 -14.87777
-14.69011 -14.56041 -14.21830 -14.05146 -13.77468 -13.48015 -13.39197 -13.30025
-13.20637 -12.91431 -12.84383 -12.83865 -12.50123 -12.26952 -12.19120 -11.90478
-11.83885 -11.65273 -11.47117 -11.05389 -10.97671 -10.85206 -10.00250 -9.79506
-9.30570 -8.22548 -8.04717 -5.37099 -0.12479 0.55721 1.34707 1.38466
1.43712 1.76992 1.84178 2.23231 2.45417 2.91175 3.24009 3.28390
3.50568 3.53759 3.77905 3.89137 3.98605 4.09738 4.16696 4.25533
4.32321 4.35386 4.41991 4.48034 4.51228 4.57071 4.61306 4.67442
4.72437 4.80340 4.83463 4.88113 4.96522 4.97503 4.99738 5.02169
5.12508 5.17578 5.22997 5.38307 5.42122 5.54486 5.75153 5.75509
6.19819 6.32754 6.38228 6.49643 6.97841 7.06394 7.83529 7.99825
9.16746
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.021399 B = 0.002855 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.137378 B = 9806.179596 C =10791.844413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.641 5.641
3 C 0.078 3.922
4 C 0.202 3.798
5 C -0.174 4.174
6 C -0.077 4.077
7 C -0.143 4.143
8 C -0.100 4.100
9 C 0.560 3.440
10 O -0.588 6.588
11 N -0.610 5.610
12 C 0.087 3.913
13 C -0.114 4.114
14 C -0.100 4.100
15 H 0.086 0.914
16 C 0.166 3.834
17 N -0.762 5.762
18 C -0.230 4.230
19 H 0.064 0.936
20 C -0.062 4.062
21 N -0.982 5.982
22 Si 0.947 3.053
23 H -0.286 1.286
24 H -0.292 1.292
25 H -0.254 1.254
26 C 0.111 3.889
27 C -0.204 4.204
28 H 0.054 0.946
29 H 0.083 0.917
30 H 0.072 0.928
31 H 0.076 0.924
32 H 0.072 0.928
33 H 0.065 0.935
34 H 0.151 0.849
35 H 0.152 0.848
36 H 0.113 0.887
37 H 0.099 0.901
38 H 0.096 0.904
39 H 0.094 0.906
40 H 0.118 0.882
41 H 0.030 0.970
42 H 0.044 0.956
43 H 0.363 0.637
44 H 0.258 0.742
45 H 0.049 0.951
46 H 0.065 0.935
47 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -36.820 3.679 -0.998 37.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.353 5.353
3 C -0.064 4.064
4 C 0.100 3.900
5 C -0.196 4.196
6 C -0.095 4.095
7 C -0.164 4.164
8 C -0.104 4.104
9 C 0.351 3.649
10 O -0.470 6.470
11 N -0.342 5.342
12 C -0.033 4.033
13 C -0.152 4.152
14 C -0.120 4.120
15 H 0.104 0.896
16 C 0.040 3.960
17 N -0.408 5.408
18 C -0.361 4.361
19 H 0.082 0.918
20 C -0.253 4.253
21 N -0.633 5.633
22 Si 0.775 3.225
23 H -0.213 1.213
24 H -0.219 1.219
25 H -0.179 1.179
26 C -0.011 4.011
27 C -0.226 4.226
28 H 0.072 0.928
29 H 0.101 0.899
30 H 0.091 0.909
31 H 0.094 0.906
32 H 0.091 0.909
33 H 0.083 0.917
34 H 0.168 0.832
35 H 0.169 0.831
36 H 0.132 0.868
37 H 0.117 0.883
38 H 0.114 0.886
39 H 0.112 0.888
40 H 0.136 0.864
41 H 0.048 0.952
42 H 0.062 0.938
43 H 0.195 0.805
44 H 0.066 0.934
45 H 0.068 0.932
46 H 0.083 0.917
47 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -36.518 3.420 -1.186 36.697
hybrid contribution 0.932 -1.363 0.586 1.752
sum -35.586 2.057 -0.599 35.650
Atomic orbital electron populations
1.21787 0.77981 1.03737 1.01898 1.46541 1.06010 1.02730 1.80007
1.21933 0.97563 0.84343 1.02554 1.17889 0.90836 0.87161 0.94163
1.21210 1.01158 0.90717 1.06528 1.21106 0.92590 0.99057 0.96773
1.21088 0.95207 0.96784 1.03354 1.19511 0.90465 0.95468 1.04959
1.18634 0.88097 0.82114 0.76017 1.90746 1.71884 1.32130 1.52197
1.48471 1.07348 1.06689 1.71699 1.22880 0.97175 0.80200 1.03091
1.22779 0.91163 0.97166 1.04110 1.22442 0.95283 0.93669 1.00606
0.89602 1.20767 0.84774 0.94693 0.95758 1.42820 1.02283 1.38702
1.56993 1.19066 0.82911 1.11995 1.22115 0.91850 1.25425 0.94936
1.02329 1.02632 1.69862 0.99060 1.44460 1.49874 0.85529 0.77828
0.79954 0.79210 1.21253 1.21902 1.17863 1.22218 0.79798 0.98359
1.00744 1.22341 0.93716 0.99366 1.07159 0.92786 0.89857 0.90921
0.90551 0.90908 0.91666 0.83183 0.83058 0.86847 0.88327 0.88625
0.88770 0.86378 0.95175 0.93780 0.80455 0.93350 0.93225 0.91700
0.80594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.50 10.10 127.77 1.29 1.79 16
2 N -0.64 -6.85 3.41 -747.39 -2.55 -9.40 16
3 C 0.08 0.52 10.62 127.77 1.36 1.88 16
4 C 0.20 3.20 6.53 38.17 0.25 3.45 16
5 C -0.17 -2.54 9.16 22.45 0.21 -2.33 16
6 C -0.08 -1.32 10.02 22.21 0.22 -1.09 16
7 C -0.14 -3.48 9.59 22.54 0.22 -3.27 16
8 C -0.10 -2.58 5.87 -20.11 -0.12 -2.70 16
9 C 0.56 18.12 7.81 86.79 0.68 18.80 16
10 O -0.59 -24.36 16.67 -3.89 -0.06 -24.43 16
11 N -0.61 -16.72 3.33 -826.37 -2.75 -19.47 16
12 C 0.09 1.44 4.71 86.73 0.41 1.85 16
13 C -0.11 -1.84 6.42 31.78 0.20 -1.64 16
14 C -0.10 -2.69 3.03 -9.48 -0.03 -2.72 16
15 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
16 C 0.17 5.84 5.72 86.38 0.49 6.34 16
17 N -0.76 -35.69 5.35 -343.44 -1.84 -37.53 16
18 C -0.23 -13.21 10.47 84.03 0.88 -12.33 16
19 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16
20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16
21 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16
22 Si 0.95 47.45 27.74 68.60 1.90 49.35 16
23 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16
24 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16
25 H -0.25 -11.58 6.52 99.48 0.65 -10.93 16
26 C 0.11 3.52 6.30 86.78 0.55 4.07 16
27 C -0.20 -3.83 7.86 22.67 0.18 -3.65 16
28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16
29 H 0.08 0.23 8.07 -2.39 -0.02 0.21 16
30 H 0.07 0.35 6.44 -2.38 -0.02 0.34 16
31 H 0.08 0.48 4.99 -2.39 -0.01 0.47 16
32 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16
33 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16
34 H 0.15 1.35 6.28 -2.91 -0.02 1.33 16
35 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16
36 H 0.11 3.06 7.67 -2.91 -0.02 3.03 16
37 H 0.10 1.23 6.72 -2.39 -0.02 1.22 16
38 H 0.10 1.27 6.59 -2.39 -0.02 1.25 16
39 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16
40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.03 1.09 7.96 -2.39 -0.02 1.07 16
42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
43 H 0.36 16.72 5.53 -92.71 -0.51 16.20 16
44 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16
45 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16
46 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16
47 H 0.18 2.53 0.59 -7.06 0.00 2.52 16
Total: -1.00 -81.42 369.08 2.67 -78.75
By element:
Atomic # 1 Polarization: 20.72 SS G_CDS: 0.42 Total: 21.14 kcal
Atomic # 6 Polarization: -2.05 SS G_CDS: 7.25 Total: 5.20 kcal
Atomic # 7 Polarization: -123.18 SS G_CDS: -6.83 Total: -130.01 kcal
Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.43 kcal
Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.35 kcal
Total: -81.42 2.67 -78.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752959759.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.620 kcal
(2) G-P(sol) polarization free energy of solvation -81.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.752 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds