Wall clock time and date at job start Tue Mar 31 2020 11:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99486 * 2 1 4 4 C 1.39704 * 120.00750 * 180.02562 * 2 1 3 5 5 C 1.39030 * 120.00100 * 354.48388 * 4 2 1 6 6 C 1.38198 * 120.21811 * 180.02562 * 5 4 2 7 7 C 1.38021 * 120.22997 * 359.97438 * 6 5 4 8 8 C 1.39575 * 120.00583 * 0.02562 * 7 6 5 9 9 C 1.47859 * 120.11356 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99529 * 8.09611 * 9 8 7 11 11 N 1.34777 * 120.00237 * 188.09309 * 9 8 7 12 12 C 1.47023 * 125.64719 * 354.86495 * 11 9 8 13 13 C 1.54320 * 107.26879 * 178.90610 * 12 11 9 14 14 C 1.55158 * 102.94641 * 337.80680 * 13 12 11 15 15 H 1.08996 * 111.00569 * 277.39523 * 14 13 12 16 16 C 1.52996 * 111.00654 * 153.57171 * 14 13 12 17 17 N 1.46505 * 109.47188 * 175.00203 * 16 14 13 18 18 C 1.36933 * 119.99904 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00404 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00114 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99779 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46993 * 90.00148 * 22 20 18 24 24 H 1.48498 * 109.46844 * 209.99835 * 22 20 18 25 25 H 1.48500 * 109.47267 * 330.00293 * 22 20 18 26 26 C 1.47428 * 125.64599 * 174.56078 * 11 9 8 27 27 C 1.38633 * 120.00869 * 174.49983 * 4 2 1 28 28 H 1.08997 * 109.47495 * 269.99274 * 1 2 3 29 29 H 1.08993 * 109.47627 * 30.00404 * 1 2 3 30 30 H 1.09006 * 109.46389 * 150.00162 * 1 2 3 31 31 H 1.08998 * 109.47181 * 185.04017 * 3 2 1 32 32 H 1.09000 * 109.47255 * 305.04610 * 3 2 1 33 33 H 1.09003 * 109.46797 * 65.03909 * 3 2 1 34 34 H 1.08007 * 119.89061 * 0.03839 * 5 4 2 35 35 H 1.08008 * 119.88078 * 179.71586 * 6 5 4 36 36 H 1.08001 * 119.99716 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.88415 * 298.32215 * 12 11 9 38 38 H 1.09000 * 109.87755 * 59.49057 * 12 11 9 39 39 H 1.08999 * 110.72186 * 96.17027 * 13 12 11 40 40 H 1.09000 * 110.72056 * 219.26957 * 13 12 11 41 41 H 1.09002 * 109.47561 * 295.00533 * 16 14 13 42 42 H 1.09001 * 109.46592 * 55.00479 * 16 14 13 43 43 H 0.96998 * 119.99692 * 0.02562 * 17 16 14 44 44 H 0.97004 * 119.99843 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.36851 * 323.00395 * 26 11 9 46 46 H 1.09002 * 110.36173 * 85.32786 * 26 11 9 47 47 H 1.08005 * 120.10673 * 359.95934 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1637 -1.2098 -0.0005 5 6 1.4736 -2.4112 0.1147 6 6 2.1602 -3.6105 0.1152 7 6 3.5356 -3.6238 0.0008 8 6 4.2380 -2.4233 -0.1154 9 6 5.7115 -2.4347 -0.2375 10 8 6.3009 -3.4875 -0.3849 11 7 6.4011 -1.2779 -0.1854 12 6 5.8129 0.0680 -0.1184 13 6 6.9801 1.0750 -0.0476 14 6 8.1514 0.2121 0.4918 15 1 8.1061 0.1267 1.5775 16 6 9.5007 0.7781 0.0449 17 7 10.5825 0.0115 0.6682 18 6 11.8878 0.3384 0.4140 19 1 12.1198 1.1609 -0.2462 20 6 12.9128 -0.3883 1.0042 21 7 14.1674 -0.0745 0.7595 22 14 12.5114 -1.8115 2.1457 23 1 12.4117 -3.0657 1.3568 24 1 13.5860 -1.9496 3.1612 25 1 11.2176 -1.5506 2.8262 26 6 7.8700 -1.1527 -0.1799 27 6 3.5452 -1.2125 -0.1156 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5139 31 1 3.2656 1.0718 -0.0903 32 1 1.8680 1.8785 -0.8413 33 1 2.0034 1.8003 0.9317 34 1 0.3972 -2.4072 0.2039 35 1 1.6190 -4.5404 0.2096 36 1 4.0685 -4.5632 0.0020 37 1 5.2148 0.2559 -1.0100 38 1 5.1918 0.1570 0.7728 39 1 7.2132 1.4655 -1.0381 40 1 6.7473 1.8874 0.6408 41 1 9.5833 0.7071 -1.0397 42 1 9.5746 1.8227 0.3473 43 1 10.3741 -0.7275 1.2609 44 1 14.8836 -0.5821 1.1723 45 1 8.3174 -1.9605 0.3992 46 1 8.2549 -1.1576 -1.1997 47 1 4.0832 -0.2803 -0.2056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752959759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:14 Heat of formation + Delta-G solvation = 25.867701 kcal Electronic energy + Delta-G solvation = -26474.067869 eV Core-core repulsion = 22850.562608 eV Total energy + Delta-G solvation = -3623.505261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76209 -40.10171 -38.95772 -36.92090 -36.67842 -34.24951 -32.90972 -32.00072 -30.99998 -30.20046 -29.13360 -27.41497 -25.71547 -25.48931 -23.88848 -22.95707 -22.36505 -21.48630 -20.71976 -19.64138 -18.43118 -17.85739 -17.46643 -16.82814 -16.59960 -16.37145 -16.21274 -15.94646 -15.77773 -15.52809 -14.97632 -14.87777 -14.69011 -14.56041 -14.21830 -14.05146 -13.77468 -13.48015 -13.39197 -13.30025 -13.20637 -12.91431 -12.84383 -12.83865 -12.50123 -12.26952 -12.19120 -11.90478 -11.83885 -11.65273 -11.47117 -11.05389 -10.97671 -10.85206 -10.00250 -9.79506 -9.30570 -8.22548 -8.04717 -5.37099 -0.12479 0.55721 1.34707 1.38466 1.43712 1.76992 1.84178 2.23231 2.45417 2.91175 3.24009 3.28390 3.50568 3.53759 3.77905 3.89137 3.98605 4.09738 4.16696 4.25533 4.32321 4.35386 4.41991 4.48034 4.51228 4.57071 4.61306 4.67442 4.72437 4.80340 4.83463 4.88113 4.96522 4.97503 4.99738 5.02169 5.12508 5.17578 5.22997 5.38307 5.42122 5.54486 5.75153 5.75509 6.19819 6.32754 6.38228 6.49643 6.97841 7.06394 7.83529 7.99825 9.16746 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002855 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.137378 B = 9806.179596 C =10791.844413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.641 5.641 3 C 0.078 3.922 4 C 0.202 3.798 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.143 4.143 8 C -0.100 4.100 9 C 0.560 3.440 10 O -0.588 6.588 11 N -0.610 5.610 12 C 0.087 3.913 13 C -0.114 4.114 14 C -0.100 4.100 15 H 0.086 0.914 16 C 0.166 3.834 17 N -0.762 5.762 18 C -0.230 4.230 19 H 0.064 0.936 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.947 3.053 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.254 1.254 26 C 0.111 3.889 27 C -0.204 4.204 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.820 3.679 -0.998 37.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.353 5.353 3 C -0.064 4.064 4 C 0.100 3.900 5 C -0.196 4.196 6 C -0.095 4.095 7 C -0.164 4.164 8 C -0.104 4.104 9 C 0.351 3.649 10 O -0.470 6.470 11 N -0.342 5.342 12 C -0.033 4.033 13 C -0.152 4.152 14 C -0.120 4.120 15 H 0.104 0.896 16 C 0.040 3.960 17 N -0.408 5.408 18 C -0.361 4.361 19 H 0.082 0.918 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.775 3.225 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.179 1.179 26 C -0.011 4.011 27 C -0.226 4.226 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.195 0.805 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -36.518 3.420 -1.186 36.697 hybrid contribution 0.932 -1.363 0.586 1.752 sum -35.586 2.057 -0.599 35.650 Atomic orbital electron populations 1.21787 0.77981 1.03737 1.01898 1.46541 1.06010 1.02730 1.80007 1.21933 0.97563 0.84343 1.02554 1.17889 0.90836 0.87161 0.94163 1.21210 1.01158 0.90717 1.06528 1.21106 0.92590 0.99057 0.96773 1.21088 0.95207 0.96784 1.03354 1.19511 0.90465 0.95468 1.04959 1.18634 0.88097 0.82114 0.76017 1.90746 1.71884 1.32130 1.52197 1.48471 1.07348 1.06689 1.71699 1.22880 0.97175 0.80200 1.03091 1.22779 0.91163 0.97166 1.04110 1.22442 0.95283 0.93669 1.00606 0.89602 1.20767 0.84774 0.94693 0.95758 1.42820 1.02283 1.38702 1.56993 1.19066 0.82911 1.11995 1.22115 0.91850 1.25425 0.94936 1.02329 1.02632 1.69862 0.99060 1.44460 1.49874 0.85529 0.77828 0.79954 0.79210 1.21253 1.21902 1.17863 1.22218 0.79798 0.98359 1.00744 1.22341 0.93716 0.99366 1.07159 0.92786 0.89857 0.90921 0.90551 0.90908 0.91666 0.83183 0.83058 0.86847 0.88327 0.88625 0.88770 0.86378 0.95175 0.93780 0.80455 0.93350 0.93225 0.91700 0.80594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.10 127.77 1.29 1.79 16 2 N -0.64 -6.85 3.41 -747.39 -2.55 -9.40 16 3 C 0.08 0.52 10.62 127.77 1.36 1.88 16 4 C 0.20 3.20 6.53 38.17 0.25 3.45 16 5 C -0.17 -2.54 9.16 22.45 0.21 -2.33 16 6 C -0.08 -1.32 10.02 22.21 0.22 -1.09 16 7 C -0.14 -3.48 9.59 22.54 0.22 -3.27 16 8 C -0.10 -2.58 5.87 -20.11 -0.12 -2.70 16 9 C 0.56 18.12 7.81 86.79 0.68 18.80 16 10 O -0.59 -24.36 16.67 -3.89 -0.06 -24.43 16 11 N -0.61 -16.72 3.33 -826.37 -2.75 -19.47 16 12 C 0.09 1.44 4.71 86.73 0.41 1.85 16 13 C -0.11 -1.84 6.42 31.78 0.20 -1.64 16 14 C -0.10 -2.69 3.03 -9.48 -0.03 -2.72 16 15 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 16 C 0.17 5.84 5.72 86.38 0.49 6.34 16 17 N -0.76 -35.69 5.35 -343.44 -1.84 -37.53 16 18 C -0.23 -13.21 10.47 84.03 0.88 -12.33 16 19 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16 22 Si 0.95 47.45 27.74 68.60 1.90 49.35 16 23 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.25 -11.58 6.52 99.48 0.65 -10.93 16 26 C 0.11 3.52 6.30 86.78 0.55 4.07 16 27 C -0.20 -3.83 7.86 22.67 0.18 -3.65 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.23 8.07 -2.39 -0.02 0.21 16 30 H 0.07 0.35 6.44 -2.38 -0.02 0.34 16 31 H 0.08 0.48 4.99 -2.39 -0.01 0.47 16 32 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.15 1.35 6.28 -2.91 -0.02 1.33 16 35 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.11 3.06 7.67 -2.91 -0.02 3.03 16 37 H 0.10 1.23 6.72 -2.39 -0.02 1.22 16 38 H 0.10 1.27 6.59 -2.39 -0.02 1.25 16 39 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 1.09 7.96 -2.39 -0.02 1.07 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.36 16.72 5.53 -92.71 -0.51 16.20 16 44 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 45 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 46 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16 47 H 0.18 2.53 0.59 -7.06 0.00 2.52 16 Total: -1.00 -81.42 369.08 2.67 -78.75 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.42 Total: 21.14 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 7.25 Total: 5.20 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -6.83 Total: -130.01 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.43 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.35 kcal Total: -81.42 2.67 -78.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752959759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.620 kcal (2) G-P(sol) polarization free energy of solvation -81.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds