Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99873 * 2 1 4 4 C 1.39708 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.39018 * 120.00507 * 179.97438 * 4 2 1 6 6 C 1.38201 * 120.22162 * 180.02562 * 5 4 2 7 7 C 1.38025 * 120.22842 * 359.71534 * 6 5 4 8 8 C 1.39582 * 120.00098 * 0.55958 * 7 6 5 9 9 C 1.47866 * 120.10521 * 179.71719 * 8 7 6 10 10 O 1.21552 * 119.99469 * 187.02621 * 9 8 7 11 11 N 1.34773 * 119.99982 * 7.02749 * 9 8 7 12 12 C 1.47020 * 125.65190 * 354.31871 * 11 9 8 13 13 C 1.54322 * 107.27243 * 181.09585 * 12 11 9 14 14 C 1.55164 * 102.94218 * 22.19362 * 13 12 11 15 15 H 1.08997 * 111.03767 * 82.58474 * 14 13 12 16 16 C 1.52995 * 111.00143 * 206.42620 * 14 13 12 17 17 N 1.46501 * 109.46907 * 178.64618 * 16 14 13 18 18 C 1.36937 * 120.00344 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99772 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00707 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99617 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00425 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47269 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47190 * 300.00480 * 22 20 18 25 25 H 1.48495 * 109.47158 * 60.00401 * 22 20 18 26 26 C 1.47422 * 125.64502 * 174.36018 * 11 9 8 27 27 C 1.38643 * 120.00307 * 359.97438 * 4 2 1 28 28 H 1.09006 * 109.46711 * 239.99837 * 1 2 3 29 29 H 1.08995 * 109.47404 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47446 * 120.00304 * 1 2 3 31 31 H 1.09007 * 109.47510 * 270.00280 * 3 2 1 32 32 H 1.08995 * 109.47302 * 30.00362 * 3 2 1 33 33 H 1.09004 * 109.47082 * 150.00342 * 3 2 1 34 34 H 1.08003 * 119.88980 * 0.03063 * 5 4 2 35 35 H 1.07999 * 119.88437 * 179.97438 * 6 5 4 36 36 H 1.08005 * 120.00270 * 180.27319 * 7 6 5 37 37 H 1.09005 * 109.87729 * 300.51120 * 12 11 9 38 38 H 1.09000 * 109.88251 * 61.52279 * 12 11 9 39 39 H 1.09000 * 110.72102 * 263.82744 * 13 12 11 40 40 H 1.09003 * 110.72221 * 140.55329 * 13 12 11 41 41 H 1.09000 * 109.47757 * 58.65075 * 16 14 13 42 42 H 1.08996 * 109.47219 * 298.64217 * 16 14 13 43 43 H 0.96997 * 120.00259 * 0.02562 * 17 16 14 44 44 H 0.96994 * 120.00351 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.36744 * 36.99630 * 26 11 9 46 46 H 1.09003 * 110.46469 * 274.71992 * 26 11 9 47 47 H 1.07993 * 120.11246 * 359.96344 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5537 -1.2100 -0.0011 6 6 4.2493 -2.4043 -0.0021 7 6 3.5684 -3.6049 0.0032 8 6 2.1727 -3.6158 -0.0020 9 6 1.4410 -4.9008 -0.0026 10 8 0.2329 -4.9121 -0.1359 11 7 2.1137 -6.0593 0.1447 12 6 3.5762 -6.2004 0.1966 13 6 3.8864 -7.7048 0.3457 14 6 2.6001 -8.3805 -0.1990 15 1 2.6215 -8.4425 -1.2870 16 6 2.4024 -9.7644 0.4226 17 7 1.1645 -10.3573 -0.0893 18 6 0.7778 -11.6027 0.3285 19 1 1.3854 -12.1478 1.0359 20 6 -0.3954 -12.1643 -0.1561 21 7 -1.1361 -11.5000 -1.0177 22 14 -0.9232 -13.8629 0.4145 23 1 -2.2007 -14.2323 -0.2462 24 1 0.1237 -14.8532 0.0554 25 1 -1.1116 -13.8540 1.8874 26 6 1.5048 -7.3951 0.2797 27 6 1.4704 -2.4106 -0.0005 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.0920 -0.2737 -0.0006 35 1 5.3292 -2.3980 -0.0030 36 1 4.1157 -4.5360 0.0068 37 1 4.0181 -5.8203 -0.7244 38 1 3.9715 -5.6516 1.0514 39 1 4.0445 -7.9641 1.3925 40 1 4.7519 -7.9816 -0.2563 41 1 2.3388 -9.6702 1.5067 42 1 3.2461 -10.4035 0.1623 43 1 0.6190 -9.8680 -0.7249 44 1 -1.9557 -11.8924 -1.3567 45 1 0.6205 -7.4746 -0.3527 46 1 1.2454 -7.5924 1.3198 47 1 0.3905 -2.4128 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752959760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = 42.393395 kcal Electronic energy + Delta-G solvation = -26006.832690 eV Core-core repulsion = 22384.044037 eV Total energy + Delta-G solvation = -3622.788653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58132 -39.21975 -37.50676 -36.33316 -34.66998 -32.40710 -31.36910 -30.50879 -30.35119 -28.68380 -28.44071 -25.67583 -25.14120 -23.98996 -22.53807 -22.16616 -21.14947 -20.05157 -19.66540 -17.69604 -16.99251 -16.66429 -16.29196 -15.92462 -15.39942 -15.34194 -15.07084 -14.65898 -14.45339 -14.01615 -13.81243 -13.65664 -13.40166 -13.15298 -13.00187 -12.84204 -12.78857 -12.57294 -12.50017 -12.33826 -12.27170 -11.87713 -11.40971 -11.26509 -10.94060 -10.81523 -10.57285 -10.48072 -10.38799 -10.08112 -9.99696 -9.76545 -9.63708 -9.10508 -8.84428 -8.48499 -7.56530 -6.89595 -5.72078 -3.01701 0.83442 1.38787 2.76778 2.94431 3.11480 3.47165 3.51168 3.52739 3.84643 4.38104 4.58954 4.60687 4.64113 4.68253 4.81362 4.89918 4.92237 4.96941 5.02242 5.20136 5.26552 5.28783 5.31206 5.37357 5.42149 5.45186 5.50245 5.61379 5.64732 5.69745 5.90255 5.99113 6.00465 6.03842 6.14161 6.22873 6.29299 6.34067 6.43222 6.44973 6.62482 6.71703 6.85552 6.93430 7.18765 7.62841 7.72492 8.27921 8.46082 9.57075 10.14329 10.48575 11.50505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.002377 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.893109 B =11775.132987 C =12727.594501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.202 3.798 5 C -0.178 4.178 6 C -0.082 4.082 7 C -0.182 4.182 8 C -0.079 4.079 9 C 0.567 3.433 10 O -0.535 6.535 11 N -0.611 5.611 12 C 0.092 3.908 13 C -0.129 4.129 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.165 3.835 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.115 3.885 27 C -0.136 4.136 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.484 26.012 2.537 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C -0.048 4.048 4 C 0.101 3.899 5 C -0.201 4.201 6 C -0.101 4.101 7 C -0.201 4.201 8 C -0.083 4.083 9 C 0.357 3.643 10 O -0.413 6.413 11 N -0.344 5.344 12 C -0.030 4.030 13 C -0.167 4.167 14 C -0.125 4.125 15 H 0.103 0.897 16 C 0.037 3.963 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.006 4.006 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.654 26.092 2.542 29.109 hybrid contribution -0.535 -0.652 0.058 0.845 sum 12.119 25.440 2.600 28.299 Atomic orbital electron populations 1.21639 0.79196 1.02355 1.01739 1.46293 1.05098 1.02922 1.80964 1.21645 0.97252 0.84856 1.01082 1.17666 0.91147 0.85577 0.95472 1.20858 0.91990 0.98893 1.08315 1.20866 0.99601 0.91632 0.97972 1.22546 0.93665 1.00523 1.03397 1.19643 0.93716 0.92557 1.02377 1.18004 0.86643 0.82728 0.76930 1.90790 1.13895 1.86871 1.49719 1.48403 1.07251 1.07042 1.71730 1.22537 0.81471 0.97742 1.01278 1.22749 0.98575 0.92791 1.02618 1.22587 0.93255 0.95506 1.01166 0.89677 1.20586 0.90489 0.89446 0.95777 1.42366 1.23320 1.18525 1.53553 1.19161 1.04319 0.93025 1.20806 0.91216 1.24760 0.97742 0.98708 0.99755 1.69652 1.15876 1.37998 1.34473 0.86259 0.77655 0.84194 0.78006 1.21714 1.21300 1.21273 1.22355 0.97234 0.78948 1.02071 1.20717 1.00422 0.89615 1.05202 0.92580 0.90879 0.92493 0.93466 0.91558 0.91390 0.85902 0.85636 0.82429 0.90486 0.90441 0.90147 0.89832 0.96029 0.95797 0.78171 0.93415 0.89661 0.90890 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 9.40 59.85 0.56 1.28 16 2 N -0.64 -5.67 3.41 -187.59 -0.64 -6.31 16 3 C 0.09 0.55 10.15 59.84 0.61 1.15 16 4 C 0.20 2.20 6.55 -83.83 -0.55 1.65 16 5 C -0.18 -1.65 9.20 -39.31 -0.36 -2.02 16 6 C -0.08 -0.74 10.02 -39.67 -0.40 -1.14 16 7 C -0.18 -1.95 8.61 -39.16 -0.34 -2.28 16 8 C -0.08 -1.09 5.87 -104.99 -0.62 -1.70 16 9 C 0.57 9.52 7.81 -12.32 -0.10 9.43 16 10 O -0.53 -11.05 16.60 5.32 0.09 -10.96 16 11 N -0.61 -9.23 3.33 -176.07 -0.59 -9.82 16 12 C 0.09 0.99 4.87 -3.07 -0.01 0.98 16 13 C -0.13 -1.44 6.42 -24.89 -0.16 -1.60 16 14 C -0.11 -1.66 3.11 -88.47 -0.27 -1.93 16 15 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.17 3.21 5.71 -4.04 -0.02 3.19 16 17 N -0.73 -18.63 5.45 -59.91 -0.33 -18.96 16 18 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.12 2.00 6.11 -2.53 -0.02 1.98 16 27 C -0.14 -1.79 8.85 -38.97 -0.34 -2.13 16 28 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 29 H 0.07 0.38 7.79 -51.93 -0.40 -0.02 16 30 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 31 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 33 H 0.07 0.34 6.19 -51.93 -0.32 0.02 16 34 H 0.12 0.86 6.13 -52.48 -0.32 0.53 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.16 1.41 2.73 -58.25 -0.16 1.25 16 37 H 0.08 0.71 6.74 -51.93 -0.35 0.36 16 38 H 0.08 0.70 6.73 -51.93 -0.35 0.35 16 39 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 10.39 7.53 -40.82 -0.31 10.09 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.08 1.73 7.98 -51.93 -0.41 1.31 16 46 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 47 H 0.13 1.84 6.33 -52.49 -0.33 1.51 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -35.04 373.77 -9.51 -44.55 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.11 Total: 6.85 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.27 Total: -0.61 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.83 Total: -63.17 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.04 -9.51 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752959760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.945 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds