Wall clock time and date at job start Tue Mar 31 2020 11:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99873 * 2 1 4 4 C 1.39708 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.39018 * 120.00507 * 179.97438 * 4 2 1 6 6 C 1.38201 * 120.22162 * 180.02562 * 5 4 2 7 7 C 1.38025 * 120.22842 * 359.71534 * 6 5 4 8 8 C 1.39582 * 120.00098 * 0.55958 * 7 6 5 9 9 C 1.47866 * 120.10521 * 179.71719 * 8 7 6 10 10 O 1.21552 * 119.99469 * 187.02621 * 9 8 7 11 11 N 1.34773 * 119.99982 * 7.02749 * 9 8 7 12 12 C 1.47020 * 125.65190 * 354.31871 * 11 9 8 13 13 C 1.54322 * 107.27243 * 181.09585 * 12 11 9 14 14 C 1.55164 * 102.94218 * 22.19362 * 13 12 11 15 15 H 1.08997 * 111.03767 * 82.58474 * 14 13 12 16 16 C 1.52995 * 111.00143 * 206.42620 * 14 13 12 17 17 N 1.46501 * 109.46907 * 178.64618 * 16 14 13 18 18 C 1.36937 * 120.00344 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99772 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00707 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99617 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00425 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47269 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47190 * 300.00480 * 22 20 18 25 25 H 1.48495 * 109.47158 * 60.00401 * 22 20 18 26 26 C 1.47422 * 125.64502 * 174.36018 * 11 9 8 27 27 C 1.38643 * 120.00307 * 359.97438 * 4 2 1 28 28 H 1.09006 * 109.46711 * 239.99837 * 1 2 3 29 29 H 1.08995 * 109.47404 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47446 * 120.00304 * 1 2 3 31 31 H 1.09007 * 109.47510 * 270.00280 * 3 2 1 32 32 H 1.08995 * 109.47302 * 30.00362 * 3 2 1 33 33 H 1.09004 * 109.47082 * 150.00342 * 3 2 1 34 34 H 1.08003 * 119.88980 * 0.03063 * 5 4 2 35 35 H 1.07999 * 119.88437 * 179.97438 * 6 5 4 36 36 H 1.08005 * 120.00270 * 180.27319 * 7 6 5 37 37 H 1.09005 * 109.87729 * 300.51120 * 12 11 9 38 38 H 1.09000 * 109.88251 * 61.52279 * 12 11 9 39 39 H 1.09000 * 110.72102 * 263.82744 * 13 12 11 40 40 H 1.09003 * 110.72221 * 140.55329 * 13 12 11 41 41 H 1.09000 * 109.47757 * 58.65075 * 16 14 13 42 42 H 1.08996 * 109.47219 * 298.64217 * 16 14 13 43 43 H 0.96997 * 120.00259 * 0.02562 * 17 16 14 44 44 H 0.96994 * 120.00351 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.36744 * 36.99630 * 26 11 9 46 46 H 1.09003 * 110.46469 * 274.71992 * 26 11 9 47 47 H 1.07993 * 120.11246 * 359.96344 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5537 -1.2100 -0.0011 6 6 4.2493 -2.4043 -0.0021 7 6 3.5684 -3.6049 0.0032 8 6 2.1727 -3.6158 -0.0020 9 6 1.4410 -4.9008 -0.0026 10 8 0.2329 -4.9121 -0.1359 11 7 2.1137 -6.0593 0.1447 12 6 3.5762 -6.2004 0.1966 13 6 3.8864 -7.7048 0.3457 14 6 2.6001 -8.3805 -0.1990 15 1 2.6215 -8.4425 -1.2870 16 6 2.4024 -9.7644 0.4226 17 7 1.1645 -10.3573 -0.0893 18 6 0.7778 -11.6027 0.3285 19 1 1.3854 -12.1478 1.0359 20 6 -0.3954 -12.1643 -0.1561 21 7 -1.1361 -11.5000 -1.0177 22 14 -0.9232 -13.8629 0.4145 23 1 -2.2007 -14.2323 -0.2462 24 1 0.1237 -14.8532 0.0554 25 1 -1.1116 -13.8540 1.8874 26 6 1.5048 -7.3951 0.2797 27 6 1.4704 -2.4106 -0.0005 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.0920 -0.2737 -0.0006 35 1 5.3292 -2.3980 -0.0030 36 1 4.1157 -4.5360 0.0068 37 1 4.0181 -5.8203 -0.7244 38 1 3.9715 -5.6516 1.0514 39 1 4.0445 -7.9641 1.3925 40 1 4.7519 -7.9816 -0.2563 41 1 2.3388 -9.6702 1.5067 42 1 3.2461 -10.4035 0.1623 43 1 0.6190 -9.8680 -0.7249 44 1 -1.9557 -11.8924 -1.3567 45 1 0.6205 -7.4746 -0.3527 46 1 1.2454 -7.5924 1.3198 47 1 0.3905 -2.4128 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752959760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:19 Heat of formation + Delta-G solvation = 18.975461 kcal Electronic energy + Delta-G solvation = -26007.848168 eV Core-core repulsion = 22384.044037 eV Total energy + Delta-G solvation = -3623.804131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66086 -40.13288 -38.80979 -37.12377 -36.43101 -34.04602 -32.44943 -31.87462 -31.30478 -29.86397 -29.14528 -27.23879 -25.95451 -25.40343 -23.90136 -23.28912 -21.97556 -21.38826 -20.77345 -19.16988 -18.47314 -17.67472 -17.44217 -16.89292 -16.55725 -16.28466 -16.12577 -15.94910 -15.72963 -15.28710 -15.12686 -14.76254 -14.66306 -14.53379 -14.13439 -13.91803 -13.64243 -13.49185 -13.40320 -13.23419 -13.12564 -13.08046 -12.92029 -12.70112 -12.45955 -12.17384 -12.04913 -12.00749 -11.73366 -11.60956 -11.34093 -11.02476 -10.91914 -10.81485 -10.02347 -9.67149 -9.00090 -8.27993 -7.94379 -5.24064 -0.09323 0.60339 1.46383 1.50459 1.56494 1.80800 1.85703 2.24323 2.56307 2.95109 3.33075 3.39739 3.59890 3.68479 3.89985 3.97092 4.09714 4.15695 4.20843 4.25294 4.34880 4.37793 4.45784 4.47500 4.57185 4.58715 4.65512 4.72974 4.76006 4.80330 4.83655 4.85740 4.90709 4.95210 5.02896 5.08323 5.18494 5.23850 5.26728 5.42886 5.44040 5.50107 5.54714 5.84169 6.26958 6.28503 6.43329 6.49265 7.02392 7.32665 8.09718 8.30846 9.29270 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.002377 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.893109 B =11775.132987 C =12727.594501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.195 3.805 5 C -0.171 4.171 6 C -0.073 4.073 7 C -0.178 4.178 8 C -0.102 4.102 9 C 0.557 3.443 10 O -0.596 6.596 11 N -0.609 5.609 12 C 0.086 3.914 13 C -0.113 4.113 14 C -0.097 4.097 15 H 0.077 0.923 16 C 0.163 3.837 17 N -0.750 5.750 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.977 3.023 23 H -0.299 1.299 24 H -0.273 1.273 25 H -0.277 1.277 26 C 0.118 3.882 27 C -0.165 4.165 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.026 0.974 42 H 0.038 0.962 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.943 27.497 3.469 33.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.357 5.357 3 C -0.053 4.053 4 C 0.093 3.907 5 C -0.193 4.193 6 C -0.091 4.091 7 C -0.198 4.198 8 C -0.106 4.106 9 C 0.349 3.651 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.035 4.035 13 C -0.151 4.151 14 C -0.117 4.117 15 H 0.095 0.905 16 C 0.037 3.963 17 N -0.392 5.392 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.274 4.274 21 N -0.625 5.625 22 Si 0.806 3.194 23 H -0.225 1.225 24 H -0.199 1.199 25 H -0.203 1.203 26 C -0.004 4.004 27 C -0.188 4.188 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.196 0.804 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.209 27.596 3.507 32.711 hybrid contribution -1.857 -0.994 -0.203 2.116 sum 15.352 26.603 3.304 30.892 Atomic orbital electron populations 1.21669 0.79253 1.03703 1.00514 1.46561 1.05477 1.03417 1.80273 1.21868 0.97782 0.83652 1.01975 1.17844 0.92191 0.85436 0.95264 1.21288 0.91109 1.00598 1.06340 1.21337 1.01531 0.90458 0.95752 1.22767 0.91958 1.02409 1.02639 1.19503 0.95153 0.90629 1.05274 1.18723 0.86300 0.84200 0.75914 1.90741 1.16610 1.87794 1.52663 1.48475 1.09292 1.05574 1.70760 1.22936 0.78466 0.98161 1.03904 1.22785 0.96699 0.91918 1.03731 1.22421 0.95439 0.93265 1.00526 0.90472 1.20788 0.88281 0.91311 0.95940 1.42656 1.25145 1.18027 1.53419 1.19651 1.04094 0.93896 1.19896 0.90093 1.25662 0.98292 1.02854 1.00594 1.69842 1.16311 1.39855 1.36466 0.85155 0.76931 0.79695 0.77648 1.22510 1.19925 1.20347 1.22104 0.96761 0.81324 1.00254 1.20646 0.99535 0.90997 1.07668 0.93783 0.88090 0.93969 0.92738 0.89902 0.90180 0.82880 0.81513 0.80442 0.87936 0.87438 0.88863 0.86500 0.95559 0.94380 0.79803 0.94143 0.94250 0.92181 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 9.40 127.77 1.20 2.66 16 2 N -0.65 -10.77 3.41 -747.42 -2.55 -13.32 16 3 C 0.09 0.78 10.15 127.77 1.30 2.07 16 4 C 0.19 4.07 6.55 38.17 0.25 4.32 16 5 C -0.17 -2.57 9.20 22.45 0.21 -2.37 16 6 C -0.07 -0.98 10.02 22.21 0.22 -0.75 16 7 C -0.18 -3.30 8.61 22.54 0.19 -3.11 16 8 C -0.10 -2.84 5.87 -20.10 -0.12 -2.96 16 9 C 0.56 19.91 7.81 86.79 0.68 20.59 16 10 O -0.60 -27.37 16.60 -3.88 -0.06 -27.43 16 11 N -0.61 -18.75 3.33 -829.25 -2.76 -21.51 16 12 C 0.09 1.58 4.87 86.73 0.42 2.01 16 13 C -0.11 -2.12 6.42 31.78 0.20 -1.92 16 14 C -0.10 -3.00 3.11 -9.40 -0.03 -3.03 16 15 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 16 C 0.16 6.27 5.71 86.38 0.49 6.77 16 17 N -0.75 -39.10 5.45 -343.46 -1.87 -40.97 16 18 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 21 N -0.97 -62.53 13.06 21.65 0.28 -62.24 16 22 Si 0.98 47.43 29.55 68.60 2.03 49.45 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.12 4.34 6.11 86.86 0.53 4.87 16 27 C -0.16 -4.57 8.85 22.67 0.20 -4.37 16 28 H 0.04 0.79 7.95 -2.38 -0.02 0.77 16 29 H 0.10 0.97 7.79 -2.39 -0.02 0.95 16 30 H 0.04 0.78 7.95 -2.39 -0.02 0.76 16 31 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.08 0.46 7.92 -2.39 -0.02 0.44 16 33 H 0.08 0.50 6.19 -2.38 -0.01 0.49 16 34 H 0.15 1.36 6.13 -2.91 -0.02 1.34 16 35 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.18 2.39 2.73 -8.32 -0.02 2.37 16 37 H 0.10 1.45 6.74 -2.38 -0.02 1.44 16 38 H 0.11 1.44 6.73 -2.39 -0.02 1.43 16 39 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.03 1.00 8.10 -2.39 -0.02 0.99 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.37 21.13 7.53 -92.71 -0.70 20.43 16 44 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.04 1.77 7.98 -2.38 -0.02 1.75 16 46 H 0.06 2.31 8.00 -2.39 -0.02 2.29 16 47 H 0.11 3.40 6.33 -2.91 -0.02 3.38 16 Total: -1.00 -83.01 373.77 2.40 -80.61 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.27 Total: 28.11 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 7.06 Total: 7.30 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -6.90 Total: -138.05 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -83.01 2.40 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752959760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.590 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds