Wall clock time and date at job start Tue Mar 31 2020 11:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 120.00081 * 2 1 4 4 C 1.50709 * 109.47133 * 270.00025 * 3 2 1 5 5 O 1.21274 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00011 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00154 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47325 * 180.02562 * 7 6 4 9 9 H 1.09001 * 110.78085 * 51.76059 * 8 7 6 10 10 C 1.55158 * 110.72138 * 174.99863 * 8 7 6 11 11 C 1.54908 * 101.58024 * 153.86363 * 10 8 7 12 12 N 1.47426 * 104.92948 * 322.93552 * 11 10 8 13 13 C 1.36940 * 125.64782 * 204.15046 * 12 11 10 14 14 H 1.07998 * 120.00050 * 161.52040 * 13 12 11 15 15 C 1.38813 * 119.99845 * 341.52923 * 13 12 11 16 16 N 1.31625 * 119.99502 * 157.60351 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 337.60447 * 15 13 12 18 18 H 1.48498 * 109.47196 * 84.54220 * 17 15 13 19 19 H 1.48510 * 109.47106 * 204.53762 * 17 15 13 20 20 H 1.48492 * 109.47267 * 324.53766 * 17 15 13 21 21 C 1.47283 * 108.55833 * 24.15781 * 12 11 10 22 22 C 1.39677 * 119.99907 * 180.02562 * 2 1 3 23 23 C 1.38909 * 120.07357 * 179.72529 * 22 2 1 24 24 C 1.38103 * 119.92499 * 179.76946 * 23 22 2 25 25 C 1.38286 * 120.07325 * 0.49945 * 24 23 22 26 26 C 1.38289 * 120.14895 * 359.75101 * 25 24 23 27 27 C 1.38104 * 120.07416 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46885 * 89.99727 * 1 2 3 29 29 H 1.08997 * 109.46693 * 210.00113 * 1 2 3 30 30 H 1.08997 * 109.46932 * 329.99640 * 1 2 3 31 31 H 1.08995 * 109.47361 * 150.00185 * 3 2 1 32 32 H 1.08997 * 109.47072 * 30.00130 * 3 2 1 33 33 H 0.97005 * 119.99911 * 0.02562 * 6 4 3 34 34 H 1.08995 * 109.46916 * 59.99887 * 7 6 4 35 35 H 1.08997 * 109.47034 * 300.00127 * 7 6 4 36 36 H 1.08995 * 111.00138 * 35.79092 * 10 8 7 37 37 H 1.08996 * 111.03892 * 271.95350 * 10 8 7 38 38 H 1.09001 * 110.37003 * 81.82903 * 11 10 8 39 39 H 1.09001 * 110.36869 * 204.04618 * 11 10 8 40 40 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.86001 * 239.49686 * 21 12 11 42 42 H 1.09000 * 110.00602 * 118.42786 * 21 12 11 43 43 H 1.08001 * 120.03580 * 359.97438 * 23 22 2 44 44 H 1.07996 * 119.96508 * 180.24999 * 24 23 22 45 45 H 1.07998 * 119.92634 * 179.76581 * 25 24 23 46 46 H 1.08003 * 119.96060 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.03192 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 8 2.0543 1.0214 -2.3426 6 7 3.1108 2.8515 -1.6672 7 6 3.3545 3.2747 -3.0484 8 6 4.1196 4.5997 -3.0484 9 1 5.0064 4.5341 -2.4180 10 6 4.5032 5.0121 -4.4941 11 6 4.6043 6.5522 -4.3616 12 7 3.5257 6.9248 -3.4282 13 6 2.9221 8.1518 -3.3550 14 1 1.9639 8.2540 -2.8675 15 6 3.5419 9.2642 -3.9075 16 7 2.8273 10.3184 -4.2399 17 14 5.3900 9.2652 -4.1792 18 1 5.6999 8.6130 -5.4768 19 1 5.8870 10.6645 -4.1974 20 1 6.0524 8.5189 -3.0794 21 6 3.2076 5.7568 -2.5893 22 6 2.1634 -1.2097 -0.0005 23 6 3.5525 -1.2115 -0.0063 24 6 4.2399 -2.4093 -0.0020 25 6 3.5469 -3.6059 -0.0024 26 6 2.1640 -3.6077 -0.0019 27 6 1.4704 -2.4135 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.1500 1.1384 0.5138 32 1 1.6085 2.0283 0.5138 33 1 3.4260 3.3974 -0.9298 34 1 2.4020 3.4048 -3.5619 35 1 3.9437 2.5154 -3.5624 36 1 3.7222 4.7312 -5.2007 37 1 5.4617 4.5810 -4.7828 38 1 5.5744 6.8349 -3.9527 39 1 4.4487 7.0273 -5.3302 40 1 3.2604 11.0959 -4.6257 41 1 2.1618 5.4796 -2.7217 42 1 3.4000 5.9870 -1.5413 43 1 4.0943 -0.2772 -0.0108 44 1 5.3199 -2.4114 -0.0024 45 1 4.0869 -4.5412 -0.0029 46 1 1.6259 -4.5441 -0.0018 47 1 0.3904 -2.4157 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753140551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:46 Heat of formation + Delta-G solvation = 32.532814 kcal Electronic energy + Delta-G solvation = -25971.786333 eV Core-core repulsion = 22348.570093 eV Total energy + Delta-G solvation = -3623.216240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29046 -39.23060 -38.00854 -36.18552 -34.74665 -32.61565 -31.41769 -30.70736 -30.12599 -29.16158 -28.36854 -26.07710 -25.06047 -23.34421 -22.43047 -21.41706 -21.08244 -20.27147 -19.74749 -17.98962 -17.43166 -16.82068 -16.48375 -15.83491 -15.68841 -15.35497 -15.18703 -14.96769 -14.48037 -14.36700 -13.87623 -13.75473 -13.58672 -13.35213 -13.25023 -12.79953 -12.76650 -12.39575 -12.30431 -12.19028 -11.97673 -11.61738 -11.60260 -11.30520 -11.04809 -11.00079 -10.62581 -10.58146 -10.48397 -10.07992 -10.03283 -9.69568 -9.45658 -9.07741 -9.07417 -8.70813 -7.51822 -7.07352 -5.97085 -3.27513 1.28550 1.44979 2.55129 2.65320 3.26122 3.32430 3.45389 3.47631 3.76592 4.52359 4.56166 4.59679 4.64944 4.80500 4.83113 4.91100 4.96391 5.00635 5.04909 5.06666 5.20235 5.26211 5.29960 5.41732 5.44598 5.55408 5.55958 5.58991 5.77779 5.81493 5.83474 6.00327 6.06431 6.08055 6.25218 6.32025 6.35869 6.47338 6.47803 6.58673 6.66274 6.69695 6.72659 6.92151 7.24298 7.45570 7.68108 8.16723 8.28686 8.80546 9.66255 10.15361 11.19054 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002295 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.794894 B =12198.793087 C =12713.919233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.612 5.612 3 C 0.104 3.896 4 C 0.485 3.515 5 O -0.529 6.529 6 N -0.727 5.727 7 C 0.134 3.866 8 C -0.116 4.116 9 H 0.080 0.920 10 C -0.122 4.122 11 C 0.110 3.890 12 N -0.610 5.610 13 C -0.243 4.243 14 H 0.091 0.909 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.303 1.303 20 H -0.277 1.277 21 C 0.141 3.859 22 C 0.225 3.775 23 C -0.195 4.195 24 C -0.073 4.073 25 C -0.182 4.182 26 C -0.074 4.074 27 C -0.195 4.195 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.028 0.972 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -25.222 11.269 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.322 5.322 3 C -0.024 4.024 4 C 0.269 3.731 5 O -0.404 6.404 6 N -0.380 5.380 7 C 0.010 3.990 8 C -0.135 4.135 9 H 0.098 0.902 10 C -0.161 4.161 11 C -0.015 4.015 12 N -0.337 5.337 13 C -0.370 4.370 14 H 0.109 0.891 15 C -0.178 4.178 16 N -0.552 5.552 17 Si 0.715 3.285 18 H -0.212 1.212 19 H -0.230 1.230 20 H -0.203 1.203 21 C 0.015 3.985 22 C 0.124 3.876 23 C -0.217 4.217 24 C -0.091 4.091 25 C -0.202 4.202 26 C -0.093 4.093 27 C -0.217 4.217 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.128 -25.299 10.548 27.410 hybrid contribution 1.271 0.634 0.078 1.423 sum 1.399 -24.665 10.626 26.893 Atomic orbital electron populations 1.21686 0.78902 1.02452 1.01817 1.45918 1.04953 1.01821 1.79489 1.21327 0.99729 0.87280 0.94069 1.21457 0.78174 0.80997 0.92476 1.90716 1.50056 1.53586 1.46044 1.46098 1.58433 1.23896 1.09560 1.21388 1.00261 0.95115 0.82202 1.22463 0.98756 0.93622 0.98670 0.90155 1.22716 1.01045 0.97155 0.95145 1.21960 0.92085 0.92539 0.94937 1.44834 1.42308 1.09356 1.37153 1.18627 1.01042 0.81843 1.35450 0.89128 1.25007 0.97855 0.95441 0.99478 1.69852 1.34812 1.06466 1.44062 0.86946 0.88042 0.75367 0.78125 1.21198 1.23047 1.20343 1.21439 0.96314 0.86627 0.94089 1.17776 0.91150 0.85507 0.93197 1.20641 0.92163 0.98610 1.10319 1.20871 0.99406 0.91991 0.96870 1.20888 0.94294 0.97760 1.07297 1.20875 0.94250 0.97104 0.97062 1.20664 0.99642 0.91073 1.10359 0.92846 0.91150 0.91429 0.87744 0.87530 0.76476 0.91131 0.91641 0.90827 0.91374 0.95717 0.92211 0.92694 0.94811 0.95364 0.86532 0.86324 0.86627 0.86331 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.23 59.85 0.61 1.38 16 2 N -0.61 -6.08 2.50 -181.00 -0.45 -6.53 16 3 C 0.10 0.88 5.68 -5.19 -0.03 0.85 16 4 C 0.49 5.81 7.90 -10.98 -0.09 5.72 16 5 O -0.53 -8.70 16.43 5.56 0.09 -8.61 16 6 N -0.73 -7.94 5.47 -60.30 -0.33 -8.27 16 7 C 0.13 1.75 5.02 -4.04 -0.02 1.73 16 8 C -0.12 -1.68 2.96 -88.78 -0.26 -1.94 16 9 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 10 C -0.12 -1.94 6.53 -24.58 -0.16 -2.11 16 11 C 0.11 2.33 4.69 -2.53 -0.01 2.32 16 12 N -0.61 -14.48 3.22 -169.86 -0.55 -15.03 16 13 C -0.24 -6.85 10.58 -15.06 -0.16 -7.01 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 15 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 16 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 17 Si 0.88 22.46 24.27 -169.99 -4.13 18.33 16 18 H -0.28 -6.96 6.48 56.52 0.37 -6.59 16 19 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.28 -6.91 6.65 56.52 0.38 -6.53 16 21 C 0.14 2.60 6.77 -2.92 -0.02 2.58 16 22 C 0.22 2.46 6.55 -83.79 -0.55 1.91 16 23 C -0.20 -2.06 9.20 -39.38 -0.36 -2.42 16 24 C -0.07 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.18 -1.68 10.04 -39.54 -0.40 -2.08 16 26 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 27 C -0.20 -1.97 9.21 -39.38 -0.36 -2.33 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 6.20 -51.93 -0.32 0.15 16 30 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 31 H 0.10 0.70 6.21 -51.93 -0.32 0.37 16 32 H 0.11 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.40 3.41 8.47 -40.82 -0.35 3.06 16 34 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.55 5.57 -51.93 -0.29 0.26 16 39 H 0.06 1.37 6.63 -51.93 -0.34 1.03 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.03 0.64 7.68 -51.93 -0.40 0.24 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.12 1.11 6.15 -52.49 -0.32 0.78 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 47 H 0.12 1.03 6.14 -52.49 -0.32 0.71 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.33 373.04 -8.98 -44.31 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.32 Total: 0.41 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.70 Total: -3.04 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.55 Total: -57.03 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.33 -8.98 -44.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753140551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.848 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds