Wall clock time and date at job start Tue Mar 31 2020 11:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 120.00081 * 2 1 4 4 C 1.50709 * 109.47133 * 270.00025 * 3 2 1 5 5 O 1.21274 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00011 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00154 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47325 * 180.02562 * 7 6 4 9 9 H 1.09001 * 110.78085 * 51.76059 * 8 7 6 10 10 C 1.55158 * 110.72138 * 174.99863 * 8 7 6 11 11 C 1.54908 * 101.58024 * 153.86363 * 10 8 7 12 12 N 1.47426 * 104.92948 * 322.93552 * 11 10 8 13 13 C 1.36940 * 125.64782 * 204.15046 * 12 11 10 14 14 H 1.07998 * 120.00050 * 161.52040 * 13 12 11 15 15 C 1.38813 * 119.99845 * 341.52923 * 13 12 11 16 16 N 1.31625 * 119.99502 * 157.60351 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 337.60447 * 15 13 12 18 18 H 1.48498 * 109.47196 * 84.54220 * 17 15 13 19 19 H 1.48510 * 109.47106 * 204.53762 * 17 15 13 20 20 H 1.48492 * 109.47267 * 324.53766 * 17 15 13 21 21 C 1.47283 * 108.55833 * 24.15781 * 12 11 10 22 22 C 1.39677 * 119.99907 * 180.02562 * 2 1 3 23 23 C 1.38909 * 120.07357 * 179.72529 * 22 2 1 24 24 C 1.38103 * 119.92499 * 179.76946 * 23 22 2 25 25 C 1.38286 * 120.07325 * 0.49945 * 24 23 22 26 26 C 1.38289 * 120.14895 * 359.75101 * 25 24 23 27 27 C 1.38104 * 120.07416 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46885 * 89.99727 * 1 2 3 29 29 H 1.08997 * 109.46693 * 210.00113 * 1 2 3 30 30 H 1.08997 * 109.46932 * 329.99640 * 1 2 3 31 31 H 1.08995 * 109.47361 * 150.00185 * 3 2 1 32 32 H 1.08997 * 109.47072 * 30.00130 * 3 2 1 33 33 H 0.97005 * 119.99911 * 0.02562 * 6 4 3 34 34 H 1.08995 * 109.46916 * 59.99887 * 7 6 4 35 35 H 1.08997 * 109.47034 * 300.00127 * 7 6 4 36 36 H 1.08995 * 111.00138 * 35.79092 * 10 8 7 37 37 H 1.08996 * 111.03892 * 271.95350 * 10 8 7 38 38 H 1.09001 * 110.37003 * 81.82903 * 11 10 8 39 39 H 1.09001 * 110.36869 * 204.04618 * 11 10 8 40 40 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.86001 * 239.49686 * 21 12 11 42 42 H 1.09000 * 110.00602 * 118.42786 * 21 12 11 43 43 H 1.08001 * 120.03580 * 359.97438 * 23 22 2 44 44 H 1.07996 * 119.96508 * 180.24999 * 24 23 22 45 45 H 1.07998 * 119.92634 * 179.76581 * 25 24 23 46 46 H 1.08003 * 119.96060 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.03192 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 8 2.0543 1.0214 -2.3426 6 7 3.1108 2.8515 -1.6672 7 6 3.3545 3.2747 -3.0484 8 6 4.1196 4.5997 -3.0484 9 1 5.0064 4.5341 -2.4180 10 6 4.5032 5.0121 -4.4941 11 6 4.6043 6.5522 -4.3616 12 7 3.5257 6.9248 -3.4282 13 6 2.9221 8.1518 -3.3550 14 1 1.9639 8.2540 -2.8675 15 6 3.5419 9.2642 -3.9075 16 7 2.8273 10.3184 -4.2399 17 14 5.3900 9.2652 -4.1792 18 1 5.6999 8.6130 -5.4768 19 1 5.8870 10.6645 -4.1974 20 1 6.0524 8.5189 -3.0794 21 6 3.2076 5.7568 -2.5893 22 6 2.1634 -1.2097 -0.0005 23 6 3.5525 -1.2115 -0.0063 24 6 4.2399 -2.4093 -0.0020 25 6 3.5469 -3.6059 -0.0024 26 6 2.1640 -3.6077 -0.0019 27 6 1.4704 -2.4135 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.1500 1.1384 0.5138 32 1 1.6085 2.0283 0.5138 33 1 3.4260 3.3974 -0.9298 34 1 2.4020 3.4048 -3.5619 35 1 3.9437 2.5154 -3.5624 36 1 3.7222 4.7312 -5.2007 37 1 5.4617 4.5810 -4.7828 38 1 5.5744 6.8349 -3.9527 39 1 4.4487 7.0273 -5.3302 40 1 3.2604 11.0959 -4.6257 41 1 2.1618 5.4796 -2.7217 42 1 3.4000 5.9870 -1.5413 43 1 4.0943 -0.2772 -0.0108 44 1 5.3199 -2.4114 -0.0024 45 1 4.0869 -4.5412 -0.0029 46 1 1.6259 -4.5441 -0.0018 47 1 0.3904 -2.4157 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753140551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:45 Heat of formation + Delta-G solvation = 8.777583 kcal Electronic energy + Delta-G solvation = -25972.816437 eV Core-core repulsion = 22348.570093 eV Total energy + Delta-G solvation = -3624.246344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14137 -40.12088 -39.38497 -36.92905 -35.99050 -34.44651 -32.42809 -31.95394 -30.99066 -30.30697 -29.43245 -27.46908 -26.04593 -24.75763 -23.16469 -22.78649 -22.10044 -21.40141 -20.91516 -18.95829 -18.67140 -18.17935 -17.46251 -17.18649 -16.74294 -16.54082 -16.16461 -16.01636 -15.44584 -15.36042 -15.19675 -14.98468 -14.56545 -14.44783 -14.18665 -14.13493 -13.93232 -13.67112 -13.45450 -13.26768 -12.99580 -12.90633 -12.81193 -12.66023 -12.26394 -12.25373 -12.01774 -11.82929 -11.66648 -11.63936 -11.38457 -11.30546 -10.81797 -10.56044 -10.06796 -9.78075 -9.05808 -8.23037 -8.19229 -5.45726 0.58190 0.73742 1.30717 1.38384 1.47909 1.65325 1.93910 2.41034 2.44046 3.02278 3.05434 3.29822 3.67225 3.83086 3.87364 3.90308 3.95004 4.02138 4.17044 4.32374 4.38023 4.38090 4.40911 4.43416 4.55897 4.64305 4.66220 4.74757 4.77111 4.80636 4.83550 4.88134 4.92143 5.01985 5.06010 5.18138 5.18298 5.35009 5.37693 5.48673 5.64288 5.66867 5.78646 6.00007 6.08788 6.23374 6.53281 6.63501 6.75471 7.29180 7.53044 8.09998 9.00705 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002295 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.794894 B =12198.793087 C =12713.919233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.619 5.619 3 C 0.105 3.895 4 C 0.485 3.515 5 O -0.578 6.578 6 N -0.717 5.717 7 C 0.145 3.855 8 C -0.094 4.094 9 H 0.108 0.892 10 C -0.112 4.112 11 C 0.100 3.900 12 N -0.631 5.631 13 C -0.236 4.236 14 H 0.056 0.944 15 C -0.041 4.041 16 N -0.958 5.958 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.309 1.309 20 H -0.264 1.264 21 C 0.136 3.864 22 C 0.205 3.795 23 C -0.212 4.212 24 C -0.082 4.082 25 C -0.191 4.191 26 C -0.081 4.081 27 C -0.211 4.211 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.416 0.584 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.024 0.976 42 H 0.039 0.961 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -27.500 12.459 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.328 5.328 3 C -0.022 4.022 4 C 0.271 3.729 5 O -0.457 6.457 6 N -0.371 5.371 7 C 0.020 3.980 8 C -0.113 4.113 9 H 0.126 0.874 10 C -0.151 4.151 11 C -0.025 4.025 12 N -0.358 5.358 13 C -0.365 4.365 14 H 0.074 0.926 15 C -0.236 4.236 16 N -0.605 5.605 17 Si 0.780 3.220 18 H -0.196 1.196 19 H -0.238 1.238 20 H -0.189 1.189 21 C 0.011 3.989 22 C 0.104 3.896 23 C -0.234 4.234 24 C -0.101 4.101 25 C -0.211 4.211 26 C -0.100 4.100 27 C -0.233 4.233 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.142 0.858 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.259 -27.612 11.775 30.103 hybrid contribution 0.502 1.278 -0.280 1.401 sum 2.761 -26.335 11.496 28.867 Atomic orbital electron populations 1.21756 0.78389 1.04074 1.00833 1.46104 1.05500 1.01993 1.79244 1.21516 1.01351 0.87463 0.91861 1.22132 0.76965 0.80363 0.93478 1.90699 1.52100 1.55107 1.47822 1.45998 1.58016 1.23870 1.09202 1.21126 0.99037 0.94465 0.83365 1.22332 0.98749 0.92249 0.97987 0.87422 1.22694 1.03136 0.93140 0.96118 1.22101 0.91112 0.96147 0.93121 1.44969 1.42721 1.08984 1.39119 1.18569 1.00062 0.84075 1.33753 0.92614 1.25697 1.02281 0.95296 1.00298 1.69988 1.36604 1.07490 1.46406 0.85875 0.82149 0.75048 0.78977 1.19611 1.23792 1.18948 1.21626 0.96860 0.86302 0.94072 1.18053 0.91668 0.86192 0.93701 1.20854 0.92287 0.99356 1.10906 1.21176 1.00477 0.91947 0.96488 1.21208 0.94558 0.98539 1.06822 1.21199 0.94629 0.97741 0.96415 1.20918 1.00332 0.91374 1.10704 0.95098 0.89889 0.89527 0.85544 0.84749 0.74748 0.93334 0.90946 0.90956 0.87690 0.95340 0.94575 0.92898 0.95767 0.94246 0.85839 0.84608 0.84778 0.84339 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.23 127.77 1.31 2.72 16 2 N -0.62 -11.40 2.50 -726.56 -1.81 -13.21 16 3 C 0.11 1.54 5.68 85.64 0.49 2.02 16 4 C 0.48 10.73 7.90 87.66 0.69 11.42 16 5 O -0.58 -18.68 16.43 -3.01 -0.05 -18.73 16 6 N -0.72 -13.77 5.47 -463.08 -2.53 -16.30 16 7 C 0.14 3.42 5.02 86.38 0.43 3.85 16 8 C -0.09 -2.40 2.96 -9.60 -0.03 -2.43 16 9 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 10 C -0.11 -3.22 6.53 31.99 0.21 -3.01 16 11 C 0.10 4.03 4.69 86.85 0.41 4.44 16 12 N -0.63 -29.56 3.22 -691.31 -2.22 -31.78 16 13 C -0.24 -13.60 10.58 84.03 0.89 -12.71 16 14 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 15 C -0.04 -2.45 5.43 84.86 0.46 -1.99 16 16 N -0.96 -60.94 13.97 21.65 0.30 -60.64 16 17 Si 0.95 46.57 24.27 68.60 1.66 48.23 16 18 H -0.27 -12.45 6.48 99.48 0.65 -11.80 16 19 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.26 -12.23 6.65 99.48 0.66 -11.57 16 21 C 0.14 4.80 6.77 86.68 0.59 5.38 16 22 C 0.21 4.26 6.55 38.21 0.25 4.51 16 23 C -0.21 -4.16 9.20 22.40 0.21 -3.96 16 24 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 25 C -0.19 -3.20 10.04 22.29 0.22 -2.97 16 26 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 27 C -0.21 -4.06 9.21 22.40 0.21 -3.85 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.02 6.20 -2.39 -0.01 1.00 16 30 H 0.09 0.95 7.89 -2.39 -0.02 0.94 16 31 H 0.13 1.30 6.21 -2.39 -0.01 1.28 16 32 H 0.13 1.21 7.89 -2.39 -0.02 1.19 16 33 H 0.42 5.60 8.47 -92.70 -0.79 4.81 16 34 H 0.05 1.39 7.93 -2.39 -0.02 1.37 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.03 1.16 5.57 -2.39 -0.01 1.15 16 39 H 0.04 1.62 6.63 -2.39 -0.02 1.60 16 40 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.02 0.90 7.68 -2.39 -0.02 0.88 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 2.10 6.15 -2.91 -0.02 2.08 16 44 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.13 2.11 6.14 -2.91 -0.02 2.09 16 Total: -1.00 -79.53 373.04 2.20 -77.33 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.08 Total: 14.08 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.78 Total: 1.03 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.27 Total: -121.94 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.66 Total: 48.23 kcal Total: -79.53 2.20 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753140551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.107 kcal (2) G-P(sol) polarization free energy of solvation -79.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds