Wall clock time and date at job start Tue Mar 31 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99743 * 2 1 4 4 C 1.53008 * 109.47019 * 270.00040 * 3 2 1 5 5 N 1.46501 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.36932 * 119.99772 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00342 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99895 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00039 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47525 * 59.98918 * 10 8 6 12 12 H 1.48495 * 109.47248 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46647 * 299.99231 * 10 8 6 14 14 C 1.34770 * 120.00210 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99998 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99984 * 359.97438 * 14 2 1 17 17 H 1.08996 * 110.72544 * 56.91004 * 16 14 2 18 18 C 1.54933 * 110.66803 * 293.80895 * 16 14 2 19 19 C 1.54594 * 102.92199 * 204.14776 * 18 16 14 20 20 C 1.54000 * 105.13857 * 21.95998 * 19 18 16 21 21 N 1.47897 * 107.05960 * 1.22285 * 20 19 18 22 22 C 1.39666 * 111.00184 * 214.15617 * 21 20 19 23 23 C 1.38912 * 120.07669 * 239.59292 * 22 21 20 24 24 C 1.38103 * 119.93079 * 180.27360 * 23 22 21 25 25 C 1.38290 * 120.06941 * 0.02562 * 24 23 22 26 26 C 1.38284 * 120.15391 * 359.97438 * 25 24 23 27 27 C 1.38105 * 120.07205 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47004 * 270.00144 * 1 2 3 29 29 H 1.09000 * 109.47407 * 30.00160 * 1 2 3 30 30 H 1.09001 * 109.47505 * 150.00039 * 1 2 3 31 31 H 1.09001 * 109.47124 * 29.99936 * 3 2 1 32 32 H 1.08992 * 109.47382 * 150.00139 * 3 2 1 33 33 H 1.08993 * 109.46839 * 300.00136 * 4 3 2 34 34 H 1.09007 * 109.46841 * 60.00282 * 4 3 2 35 35 H 0.96995 * 120.00192 * 359.97438 * 5 4 3 36 36 H 0.97002 * 120.00030 * 180.02562 * 9 8 6 37 37 H 1.09001 * 110.71921 * 85.79382 * 18 16 14 38 38 H 1.08994 * 110.72684 * 322.50933 * 18 16 14 39 39 H 1.08997 * 110.31640 * 263.04683 * 19 18 16 40 40 H 1.09000 * 110.30815 * 140.86928 * 19 18 16 41 41 H 1.08998 * 109.91580 * 241.86896 * 20 19 18 42 42 H 1.09001 * 110.08024 * 120.66850 * 20 19 18 43 43 H 1.08007 * 120.03639 * 0.30326 * 23 22 21 44 44 H 1.07993 * 119.96688 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.92189 * 179.97438 * 25 24 23 46 46 H 1.07993 * 119.96759 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.03661 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1843 2.9795 -1.4426 6 6 3.5260 3.5728 -2.6285 7 1 3.2564 3.1050 -3.5638 8 6 4.2200 4.7750 -2.6285 9 7 4.5491 5.3449 -1.4887 10 14 4.6856 5.5847 -4.2463 11 1 3.4556 5.8803 -5.0239 12 1 5.4151 6.8493 -3.9750 13 1 5.5559 4.6681 -5.0260 14 6 2.1389 -1.1671 -0.0005 15 8 3.3517 -1.1671 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 1 0.7102 -2.5279 -0.8544 18 6 0.6057 -2.6536 1.3260 19 6 0.4465 -4.1880 1.4265 20 6 1.5648 -4.7672 0.5401 21 7 2.3269 -3.6212 -0.0012 22 6 2.7868 -3.8907 -1.2921 23 6 4.1488 -3.8701 -1.5644 24 6 4.5999 -4.1316 -2.8432 25 6 3.6973 -4.4132 -3.8523 26 6 2.3407 -4.4346 -3.5848 27 6 1.8829 -4.1740 -2.3082 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.0414 0.9508 -1.9563 34 1 1.4999 1.8408 -1.9564 35 1 3.4262 3.3999 -0.6026 36 1 5.0337 6.1852 -1.4886 37 1 -0.3684 -2.1676 1.2703 38 1 1.1820 -2.2696 2.1677 39 1 -0.5301 -4.4926 1.0505 40 1 0.5744 -4.5148 2.4585 41 1 1.1302 -5.3433 -0.2768 42 1 2.2217 -5.4028 1.1340 43 1 4.8544 -3.6503 -0.7766 44 1 5.6586 -4.1153 -3.0556 45 1 4.0526 -4.6169 -4.8516 46 1 1.6385 -4.6544 -4.3752 47 1 0.8233 -4.1913 -2.0998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753197139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:19 Heat of formation + Delta-G solvation = 28.983924 kcal Electronic energy + Delta-G solvation = -26998.163412 eV Core-core repulsion = 23374.793281 eV Total energy + Delta-G solvation = -3623.370132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89345 -39.15653 -37.61770 -35.75929 -34.33158 -32.80128 -31.47723 -30.96207 -29.87607 -28.51810 -27.90655 -26.38952 -24.14018 -23.19258 -22.49117 -21.91217 -21.27509 -20.74159 -18.98369 -17.75521 -17.23546 -17.05252 -16.09322 -15.80781 -15.35853 -14.95204 -14.90092 -14.47440 -14.44518 -14.09636 -13.62590 -13.48571 -13.44539 -13.15675 -13.08244 -12.88782 -12.81168 -12.55371 -12.26323 -12.23355 -11.86833 -11.53479 -11.42454 -11.28757 -11.19055 -10.97016 -10.92988 -10.85045 -10.62118 -10.10780 -9.72606 -9.51691 -8.96428 -8.82606 -8.72877 -8.66545 -8.41005 -6.88682 -5.71848 -3.00815 1.20355 1.38743 2.82681 2.97684 3.47748 3.51562 3.53170 3.66518 3.76278 4.28716 4.35475 4.59680 4.64892 4.72088 4.81448 4.84828 4.90645 5.06213 5.09698 5.13204 5.30467 5.34974 5.37820 5.45292 5.49844 5.55355 5.57219 5.62885 5.64308 5.70300 5.72947 5.82579 5.90426 6.01335 6.08995 6.18622 6.31156 6.38787 6.43482 6.49579 6.63998 6.76904 6.80939 6.98407 7.29628 7.58916 7.73899 8.43295 8.47371 9.57520 10.14137 10.49530 11.51095 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003462 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.411689 B = 8086.532019 C = 9507.296796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.110 3.890 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.520 3.480 15 O -0.507 6.507 16 C 0.052 3.948 17 H 0.080 0.920 18 C -0.114 4.114 19 C -0.129 4.129 20 C 0.040 3.960 21 N -0.460 5.460 22 C 0.083 3.917 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.155 4.155 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.016 0.984 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 -23.854 4.233 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C -0.012 4.012 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.306 3.694 15 O -0.380 6.380 16 C -0.059 4.059 17 H 0.098 0.902 18 C -0.152 4.152 19 C -0.167 4.167 20 C -0.087 4.087 21 N -0.182 5.182 22 C -0.011 4.011 23 C -0.091 4.091 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.175 4.175 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.782 -23.710 4.404 26.417 hybrid contribution -0.471 0.573 -1.277 1.477 sum -11.254 -23.138 3.127 25.919 Atomic orbital electron populations 1.21864 0.80117 1.03151 1.01495 1.47747 1.06669 1.06198 1.74227 1.21675 0.97459 0.83059 0.99026 1.20896 0.94968 0.89331 0.93292 1.42198 1.67156 1.21556 1.06553 1.19162 1.29456 1.02320 0.85961 0.91327 1.24737 1.01260 0.98050 0.96890 1.69652 1.45056 1.19586 1.23969 0.86248 0.78127 0.78659 0.83048 1.21291 1.21626 1.21232 1.20072 0.88069 0.84364 0.76911 1.90727 1.13404 1.86676 1.47221 1.22824 0.92851 0.90615 0.99561 0.90215 1.22538 1.00054 0.96458 0.96169 1.22415 0.98298 0.95104 1.00905 1.23000 0.94751 0.92744 0.98176 1.62014 1.33933 1.03121 1.19085 1.18891 0.93786 0.99880 0.88520 1.21070 0.94588 0.96587 0.96855 1.21173 0.99947 0.99411 0.92862 1.21178 0.93345 1.00298 0.99208 1.20948 0.95779 1.00488 0.96200 1.21562 0.99307 1.02469 0.94192 0.92556 0.90571 0.91668 0.90541 0.89721 0.96049 0.96612 0.78266 0.93456 0.89785 0.89900 0.91006 0.90329 0.92997 0.89664 0.85074 0.85701 0.86112 0.86257 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.02 59.85 0.54 1.31 16 2 N -0.61 -9.02 2.87 -181.57 -0.52 -9.54 16 3 C 0.11 1.98 5.52 -4.04 -0.02 1.96 16 4 C 0.14 3.18 6.58 -4.04 -0.03 3.15 16 5 N -0.73 -19.65 5.60 -59.90 -0.34 -19.99 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 10 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.52 8.30 6.97 -10.99 -0.08 8.23 16 15 O -0.51 -10.37 15.81 5.55 0.09 -10.28 16 16 C 0.05 0.61 1.62 -66.94 -0.11 0.50 16 17 H 0.08 0.86 5.79 -51.93 -0.30 0.56 16 18 C -0.11 -0.97 5.77 -24.87 -0.14 -1.11 16 19 C -0.13 -0.89 6.93 -25.37 -0.18 -1.06 16 20 C 0.04 0.36 6.51 -2.75 -0.02 0.34 16 21 N -0.46 -5.74 4.59 -161.06 -0.74 -6.48 16 22 C 0.08 1.10 4.40 -83.79 -0.37 0.73 16 23 C -0.07 -1.01 9.97 -39.38 -0.39 -1.40 16 24 C -0.12 -1.42 10.04 -39.61 -0.40 -1.82 16 25 C -0.12 -1.37 10.04 -39.55 -0.40 -1.77 16 26 C -0.12 -1.26 10.04 -39.61 -0.40 -1.65 16 27 C -0.16 -1.78 7.90 -39.38 -0.31 -2.09 16 28 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 29 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.06 0.52 6.05 -51.93 -0.31 0.21 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.08 1.70 7.42 -51.93 -0.39 1.31 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.08 0.53 6.59 -51.93 -0.34 0.19 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.43 6.68 -51.93 -0.35 0.08 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.10 7.05 -52.49 -0.37 0.73 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -35.69 377.85 -10.04 -45.73 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.38 Total: 7.47 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.54 Total: -2.35 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.87 Total: -64.34 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.69 -10.04 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753197139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.712 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds