Wall clock time and date at job start Tue Mar 31 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99743 * 2 1 4 4 C 1.53008 * 109.47019 * 270.00040 * 3 2 1 5 5 N 1.46501 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.36932 * 119.99772 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00342 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99895 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00039 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47525 * 59.98918 * 10 8 6 12 12 H 1.48495 * 109.47248 * 179.97438 * 10 8 6 13 13 H 1.48510 * 109.46647 * 299.99231 * 10 8 6 14 14 C 1.34770 * 120.00210 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99998 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99984 * 359.97438 * 14 2 1 17 17 H 1.08996 * 110.72544 * 56.91004 * 16 14 2 18 18 C 1.54933 * 110.66803 * 293.80895 * 16 14 2 19 19 C 1.54594 * 102.92199 * 204.14776 * 18 16 14 20 20 C 1.54000 * 105.13857 * 21.95998 * 19 18 16 21 21 N 1.47897 * 107.05960 * 1.22285 * 20 19 18 22 22 C 1.39666 * 111.00184 * 214.15617 * 21 20 19 23 23 C 1.38912 * 120.07669 * 239.59292 * 22 21 20 24 24 C 1.38103 * 119.93079 * 180.27360 * 23 22 21 25 25 C 1.38290 * 120.06941 * 0.02562 * 24 23 22 26 26 C 1.38284 * 120.15391 * 359.97438 * 25 24 23 27 27 C 1.38105 * 120.07205 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47004 * 270.00144 * 1 2 3 29 29 H 1.09000 * 109.47407 * 30.00160 * 1 2 3 30 30 H 1.09001 * 109.47505 * 150.00039 * 1 2 3 31 31 H 1.09001 * 109.47124 * 29.99936 * 3 2 1 32 32 H 1.08992 * 109.47382 * 150.00139 * 3 2 1 33 33 H 1.08993 * 109.46839 * 300.00136 * 4 3 2 34 34 H 1.09007 * 109.46841 * 60.00282 * 4 3 2 35 35 H 0.96995 * 120.00192 * 359.97438 * 5 4 3 36 36 H 0.97002 * 120.00030 * 180.02562 * 9 8 6 37 37 H 1.09001 * 110.71921 * 85.79382 * 18 16 14 38 38 H 1.08994 * 110.72684 * 322.50933 * 18 16 14 39 39 H 1.08997 * 110.31640 * 263.04683 * 19 18 16 40 40 H 1.09000 * 110.30815 * 140.86928 * 19 18 16 41 41 H 1.08998 * 109.91580 * 241.86896 * 20 19 18 42 42 H 1.09001 * 110.08024 * 120.66850 * 20 19 18 43 43 H 1.08007 * 120.03639 * 0.30326 * 23 22 21 44 44 H 1.07993 * 119.96688 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.92189 * 179.97438 * 25 24 23 46 46 H 1.07993 * 119.96759 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.03661 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1843 2.9795 -1.4426 6 6 3.5260 3.5728 -2.6285 7 1 3.2564 3.1050 -3.5638 8 6 4.2200 4.7750 -2.6285 9 7 4.5491 5.3449 -1.4887 10 14 4.6856 5.5847 -4.2463 11 1 3.4556 5.8803 -5.0239 12 1 5.4151 6.8493 -3.9750 13 1 5.5559 4.6681 -5.0260 14 6 2.1389 -1.1671 -0.0005 15 8 3.3517 -1.1671 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 1 0.7102 -2.5279 -0.8544 18 6 0.6057 -2.6536 1.3260 19 6 0.4465 -4.1880 1.4265 20 6 1.5648 -4.7672 0.5401 21 7 2.3269 -3.6212 -0.0012 22 6 2.7868 -3.8907 -1.2921 23 6 4.1488 -3.8701 -1.5644 24 6 4.5999 -4.1316 -2.8432 25 6 3.6973 -4.4132 -3.8523 26 6 2.3407 -4.4346 -3.5848 27 6 1.8829 -4.1740 -2.3082 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 3.0414 0.9508 -1.9563 34 1 1.4999 1.8408 -1.9564 35 1 3.4262 3.3999 -0.6026 36 1 5.0337 6.1852 -1.4886 37 1 -0.3684 -2.1676 1.2703 38 1 1.1820 -2.2696 2.1677 39 1 -0.5301 -4.4926 1.0505 40 1 0.5744 -4.5148 2.4585 41 1 1.1302 -5.3433 -0.2768 42 1 2.2217 -5.4028 1.1340 43 1 4.8544 -3.6503 -0.7766 44 1 5.6586 -4.1153 -3.0556 45 1 4.0526 -4.6169 -4.8516 46 1 1.6385 -4.6544 -4.3752 47 1 0.8233 -4.1913 -2.0998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753197139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:18 Heat of formation + Delta-G solvation = 5.025311 kcal Electronic energy + Delta-G solvation = -26999.202336 eV Core-core repulsion = 23374.793281 eV Total energy + Delta-G solvation = -3624.409055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84480 -40.25734 -38.51108 -37.29851 -36.09999 -33.73954 -33.30274 -31.85954 -31.07749 -29.42625 -29.23428 -27.51318 -25.84510 -24.35286 -23.56296 -23.21192 -22.28573 -21.66943 -20.14018 -19.22205 -18.61079 -18.21814 -17.26600 -16.96010 -16.59335 -16.20690 -16.06446 -15.74844 -15.38944 -15.29043 -15.09346 -15.01774 -14.77040 -14.36732 -14.26568 -13.97504 -13.77059 -13.39649 -13.19602 -13.11251 -13.05615 -12.87376 -12.76478 -12.62128 -12.36368 -12.27405 -12.19179 -12.18152 -12.11721 -11.89541 -11.54750 -11.00126 -10.75261 -9.88232 -9.68527 -9.58601 -9.53398 -9.09956 -7.99956 -5.31312 0.30954 0.46175 1.43823 1.48436 1.54521 1.63952 1.86910 2.53378 2.75825 2.89876 3.32755 3.47362 3.54913 3.87351 3.94487 3.99117 4.04478 4.06982 4.13009 4.19562 4.21865 4.23622 4.35366 4.47260 4.51327 4.52900 4.55293 4.70599 4.74229 4.79749 4.86021 4.91539 4.97688 4.99847 5.06173 5.08888 5.11277 5.24906 5.39465 5.43917 5.49724 5.52909 5.57867 5.71303 5.89911 6.21157 6.39485 6.47119 7.24180 7.27269 7.98250 8.24589 9.23204 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.003462 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.411689 B = 8086.532019 C = 9507.296796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.611 5.611 3 C 0.125 3.875 4 C 0.152 3.848 5 N -0.742 5.742 6 C -0.255 4.255 7 H 0.071 0.929 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.978 3.022 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.510 3.490 15 O -0.567 6.567 16 C 0.058 3.942 17 H 0.098 0.902 18 C -0.108 4.108 19 C -0.119 4.119 20 C 0.037 3.963 21 N -0.488 5.488 22 C 0.073 3.927 23 C -0.107 4.107 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.116 4.116 27 C -0.159 4.159 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.055 0.945 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.376 0.624 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 -24.956 3.240 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C 0.001 3.999 4 C 0.025 3.975 5 N -0.386 5.386 6 C -0.387 4.387 7 H 0.089 0.911 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.806 3.194 11 H -0.198 1.198 12 H -0.215 1.215 13 H -0.207 1.207 14 C 0.298 3.702 15 O -0.444 6.444 16 C -0.052 4.052 17 H 0.116 0.884 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.088 4.088 21 N -0.210 5.210 22 C -0.021 4.021 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.134 4.134 27 C -0.178 4.178 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.208 0.792 36 H 0.063 0.937 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.208 -24.852 3.414 28.830 hybrid contribution 0.590 0.869 -0.956 1.421 sum -13.618 -23.982 2.457 27.688 Atomic orbital electron populations 1.22240 0.76647 1.04601 1.03880 1.47840 1.08685 1.04563 1.73387 1.21284 0.97278 0.85361 0.95970 1.20909 0.94078 0.86613 0.95950 1.42378 1.67701 1.22880 1.05613 1.19543 1.29526 1.02735 0.86867 0.91111 1.25632 1.01406 0.98722 1.00569 1.69813 1.45820 1.19877 1.26193 0.85155 0.78121 0.77336 0.78797 1.19767 1.21542 1.20714 1.21029 0.87767 0.86005 0.75441 1.90703 1.16203 1.87605 1.49904 1.22837 0.92397 0.87856 1.02074 0.88431 1.22597 1.00604 0.98059 0.93395 1.22424 0.98652 0.93406 1.01160 1.23089 0.95174 0.91806 0.98762 1.61918 1.35401 1.04559 1.19107 1.19052 0.93635 0.99848 0.89571 1.21114 0.95323 0.98995 0.97163 1.21372 1.00929 0.99629 0.92748 1.21505 0.93627 0.99824 0.99833 1.21367 0.96110 0.99121 0.96803 1.21817 1.00217 1.01913 0.93888 0.89649 0.90424 0.88986 0.88435 0.92685 0.99053 0.95239 0.79227 0.93691 0.86553 0.91694 0.88140 0.89375 0.91921 0.90231 0.87646 0.84955 0.83786 0.83317 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.02 127.77 1.15 2.28 16 2 N -0.61 -17.49 2.87 -846.75 -2.43 -19.92 16 3 C 0.12 4.57 5.52 86.38 0.48 5.05 16 4 C 0.15 6.88 6.58 86.38 0.57 7.45 16 5 N -0.74 -40.98 5.60 -343.44 -1.92 -42.90 16 6 C -0.26 -15.22 9.99 84.04 0.84 -14.38 16 7 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 9 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 10 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 C 0.51 16.41 6.97 87.66 0.61 17.02 16 15 O -0.57 -24.72 15.81 -3.05 -0.05 -24.77 16 16 C 0.06 1.28 1.62 44.51 0.07 1.35 16 17 H 0.10 1.78 5.79 -2.39 -0.01 1.76 16 18 C -0.11 -1.52 5.77 31.80 0.18 -1.33 16 19 C -0.12 -1.21 6.93 31.47 0.22 -0.99 16 20 C 0.04 0.60 6.51 86.45 0.56 1.17 16 21 N -0.49 -12.08 4.59 -663.47 -3.04 -15.12 16 22 C 0.07 1.95 4.40 38.22 0.17 2.11 16 23 C -0.11 -3.24 9.97 22.40 0.22 -3.01 16 24 C -0.13 -3.32 10.04 22.25 0.22 -3.10 16 25 C -0.13 -2.81 10.04 22.29 0.22 -2.58 16 26 C -0.12 -2.28 10.04 22.25 0.22 -2.05 16 27 C -0.16 -3.35 7.90 22.40 0.18 -3.18 16 28 H 0.09 0.98 7.72 -2.38 -0.02 0.96 16 29 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 30 H 0.09 1.06 6.05 -2.39 -0.01 1.04 16 31 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 32 H 0.05 2.34 7.42 -2.39 -0.02 2.32 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.38 21.61 7.67 -92.71 -0.71 20.90 16 36 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.12 0.87 6.59 -2.39 -0.02 0.86 16 38 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.87 6.68 -2.39 -0.02 0.86 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.14 2.17 7.05 -2.91 -0.02 2.15 16 Total: -1.00 -81.77 377.85 1.50 -80.26 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.25 Total: 31.57 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.39 Total: 2.03 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -7.12 Total: -138.72 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -81.77 1.50 -80.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753197139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.290 kcal (2) G-P(sol) polarization free energy of solvation -81.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds