Wall clock time and date at job start Tue Mar 31 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00331 * 2 1 4 4 H 1.08001 * 120.00205 * 203.31610 * 3 2 1 5 5 C 1.38806 * 120.00022 * 23.32024 * 3 2 1 6 6 N 1.31621 * 119.99996 * 14.41141 * 5 3 2 7 7 Si 1.86805 * 120.00076 * 194.41777 * 5 3 2 8 8 H 1.48496 * 109.46906 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47227 * 119.99580 * 7 5 3 10 10 H 1.48500 * 109.46705 * 239.99556 * 7 5 3 11 11 C 1.46502 * 119.99703 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47460 * 89.99909 * 11 2 1 13 13 H 1.09002 * 110.88391 * 57.42471 * 12 11 2 14 14 C 1.55155 * 111.00286 * 293.55024 * 12 11 2 15 15 C 1.54323 * 102.93946 * 206.42281 * 14 12 11 16 16 N 1.47025 * 107.27398 * 22.19300 * 15 14 12 17 17 C 1.34773 * 125.64932 * 181.02818 * 16 15 14 18 18 O 1.21277 * 120.00099 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00216 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47194 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46830 * 180.02562 * 20 19 17 22 22 C 1.38666 * 120.42297 * 90.00365 * 21 20 19 23 23 C 1.38627 * 118.42446 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.15850 * 359.97438 * 23 22 21 25 25 N 1.31849 * 120.76455 * 0.02562 * 24 23 22 26 26 C 1.31886 * 121.72647 * 359.70971 * 25 24 23 27 27 C 1.47428 * 108.69978 * 1.28435 * 16 15 14 28 28 H 1.08998 * 109.47053 * 275.19320 * 1 2 3 29 29 H 1.09009 * 109.46384 * 35.18372 * 1 2 3 30 30 H 1.08990 * 109.47354 * 155.18419 * 1 2 3 31 31 H 0.97008 * 119.99714 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46876 * 329.99625 * 11 2 1 33 33 H 1.09003 * 109.46809 * 209.99956 * 11 2 1 34 34 H 1.08988 * 110.72429 * 88.05713 * 14 12 11 35 35 H 1.09002 * 110.71771 * 324.78302 * 14 12 11 36 36 H 1.08997 * 109.88193 * 262.77214 * 15 14 12 37 37 H 1.08999 * 110.01033 * 141.67954 * 15 14 12 38 38 H 1.09000 * 109.46899 * 60.00028 * 19 17 16 39 39 H 1.09006 * 109.47251 * 300.00427 * 19 17 16 40 40 H 1.08997 * 109.47296 * 300.00008 * 20 19 17 41 41 H 1.08994 * 109.47032 * 60.00103 * 20 19 17 42 42 H 1.08001 * 120.78937 * 0.02562 * 22 21 20 43 43 H 1.07995 * 120.42220 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.61439 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.62143 * 180.30921 * 26 25 24 46 46 H 1.08998 * 110.36132 * 94.48823 * 27 16 15 47 47 H 1.08998 * 110.36340 * 216.80508 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1636 1.2241 -0.3702 5 6 1.5408 2.3389 0.4759 6 7 0.4323 2.2549 1.1805 7 14 2.2945 4.0099 0.1161 8 1 3.5299 3.8327 -0.6887 9 1 1.3233 4.8379 -0.6430 10 1 2.6298 4.6872 1.3944 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9451 -1.9920 14 6 1.1224 -2.0615 -2.1606 15 6 1.5675 -3.0733 -3.2374 16 7 2.8440 -3.6512 -2.7924 17 6 3.5709 -4.5637 -3.4672 18 8 4.6136 -4.9727 -3.0022 19 6 3.0879 -5.0760 -4.7996 20 6 4.0894 -6.0945 -5.3479 21 6 3.6066 -6.6062 -6.6807 22 6 3.9741 -5.9650 -7.8540 23 6 3.5059 -6.4707 -9.0568 24 6 2.6945 -7.5898 -9.0467 25 7 2.3654 -8.1739 -7.9115 26 6 2.7964 -7.7235 -6.7493 27 6 3.1942 -3.0718 -1.4828 28 1 -0.3633 0.0930 1.0234 29 1 -0.3632 0.8400 -0.5922 30 1 -0.3633 -0.9327 -0.4313 31 1 0.0066 3.0608 1.5128 32 1 1.6083 -2.0286 0.5130 33 1 3.1499 -1.1387 0.5133 34 1 0.6865 -1.1750 -2.6211 35 1 0.4195 -2.5217 -1.4660 36 1 1.7037 -2.5637 -4.1912 37 1 0.8205 -3.8603 -3.3412 38 1 2.9967 -4.2436 -5.4975 39 1 2.1160 -5.5535 -4.6748 40 1 5.0614 -5.6174 -5.4728 41 1 4.1801 -6.9267 -4.6500 42 1 4.6099 -5.0923 -7.8313 43 1 3.7724 -5.9969 -9.9900 44 1 2.3253 -7.9897 -9.9795 45 1 2.5096 -8.2315 -5.8403 46 1 2.8476 -3.7187 -0.6769 47 1 4.2710 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753350457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:30 Heat of formation + Delta-G solvation = 14.846221 kcal Electronic energy + Delta-G solvation = -25690.389456 eV Core-core repulsion = 22066.406268 eV Total energy + Delta-G solvation = -3623.983188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61310 -39.94813 -37.75972 -35.38208 -34.82508 -32.49622 -32.28513 -30.73624 -30.03484 -29.17071 -26.33759 -25.84399 -24.70331 -23.91435 -22.99190 -21.75684 -21.18612 -19.83512 -19.09358 -17.53959 -17.14784 -16.84419 -16.57508 -16.17781 -15.57161 -15.35966 -14.90557 -14.60576 -14.20741 -13.88064 -13.62359 -13.56806 -13.41142 -13.38837 -13.16726 -12.74399 -12.69203 -12.34381 -12.14049 -11.98805 -11.85262 -11.39492 -11.32544 -11.05136 -10.92665 -10.76621 -10.46982 -10.37923 -10.18001 -10.04369 -9.92013 -9.85314 -9.83612 -9.76584 -9.28954 -8.60833 -8.54980 -6.75013 -5.74164 -3.21116 0.73098 0.91625 2.60348 2.99087 3.35734 3.43608 3.45333 3.46010 4.07048 4.28928 4.44814 4.46988 4.59823 4.63332 4.65813 4.80183 4.83622 4.86472 5.03677 5.11149 5.21117 5.25026 5.35156 5.40086 5.45207 5.52682 5.54860 5.71614 5.74002 5.81818 5.85194 5.94146 5.97527 6.06604 6.20583 6.21469 6.34318 6.39232 6.50118 6.71628 6.72677 6.86211 7.32301 7.55634 7.61724 7.70666 7.79604 8.14005 8.38389 9.22128 9.85797 10.34634 11.30232 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.002123 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.842670 B =13184.181991 C =13372.298109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.599 5.599 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.116 4.116 15 C 0.098 3.902 16 N -0.616 5.616 17 C 0.525 3.475 18 O -0.548 6.548 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.131 4.131 22 C -0.073 4.073 23 C -0.170 4.170 24 C 0.090 3.910 25 N -0.484 5.484 26 C 0.101 3.899 27 C 0.109 3.891 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.002 0.998 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -17.193 -17.599 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.025 4.025 16 N -0.349 5.349 17 C 0.314 3.686 18 O -0.426 6.426 19 C -0.170 4.170 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.190 4.190 24 C -0.067 4.067 25 N -0.193 5.193 26 C -0.056 4.056 27 C -0.014 4.014 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.650 -18.060 -17.331 25.171 hybrid contribution 0.728 1.891 -0.281 2.045 sum 3.378 -16.170 -17.612 24.147 Atomic orbital electron populations 1.20835 0.82720 0.95428 0.99437 1.43846 1.01748 1.00533 1.85993 1.19201 0.98452 0.85599 1.35127 0.91464 1.25018 0.98091 0.98521 0.98070 1.70086 1.20625 1.27099 1.37283 0.86226 0.78484 0.84501 0.77588 1.20343 1.21664 1.21765 1.20613 0.96394 0.88636 0.90978 1.23235 0.94810 0.94336 1.01547 0.89987 1.22618 0.98244 0.97936 0.96615 1.22160 0.84829 0.96607 0.98856 1.48632 1.23237 1.41500 1.21561 1.20240 0.83677 0.78415 0.86288 1.90701 1.23620 1.58368 1.69889 1.21623 1.00689 1.00129 0.94566 1.20283 0.98633 0.98995 0.92060 1.20961 0.99056 0.97060 0.96222 1.21572 0.97548 0.98890 0.91867 1.22171 0.99577 0.98202 0.99066 1.22778 0.94649 0.92694 0.96529 1.67702 1.21816 1.31101 0.98637 1.22741 0.93457 0.93317 0.96040 1.22405 1.00609 0.94462 0.83913 0.95235 0.94417 0.97941 0.93837 0.94335 0.93144 0.89782 0.90821 0.91740 0.91809 0.88915 0.88842 0.89818 0.89659 0.84731 0.84752 0.82857 0.82749 0.91554 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 8.61 59.85 0.52 4.24 16 2 N -0.60 -14.23 2.84 -181.12 -0.51 -14.75 16 3 C -0.25 -6.76 9.64 -15.06 -0.15 -6.90 16 4 H 0.07 1.77 7.87 -52.49 -0.41 1.35 16 5 C 0.00 0.04 5.07 -17.43 -0.09 -0.05 16 6 N -0.91 -26.03 10.81 55.49 0.60 -25.43 16 7 Si 0.90 21.53 29.58 -169.99 -5.03 16.51 16 8 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.16 3.09 5.16 -4.04 -0.02 3.07 16 12 C -0.12 -1.86 3.31 -88.36 -0.29 -2.16 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.12 -1.60 5.02 -24.90 -0.13 -1.72 16 15 C 0.10 1.10 6.48 -3.06 -0.02 1.08 16 16 N -0.62 -8.06 3.32 -170.38 -0.57 -8.62 16 17 C 0.53 6.83 7.85 -10.99 -0.09 6.74 16 18 O -0.55 -9.02 16.24 5.56 0.09 -8.93 16 19 C -0.13 -1.16 4.87 -27.88 -0.14 -1.30 16 20 C -0.06 -0.52 4.66 -27.88 -0.13 -0.65 16 21 C -0.13 -1.06 5.15 -104.48 -0.54 -1.60 16 22 C -0.07 -0.53 9.86 -39.28 -0.39 -0.92 16 23 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 24 C 0.09 0.70 11.18 -17.55 -0.20 0.50 16 25 N -0.48 -4.75 10.36 -13.25 -0.14 -4.89 16 26 C 0.10 0.89 10.86 -17.55 -0.19 0.70 16 27 C 0.11 1.57 6.38 -2.41 -0.02 1.55 16 28 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 29 H 0.04 0.94 7.40 -51.92 -0.38 0.56 16 30 H 0.00 0.04 6.16 -51.93 -0.32 -0.28 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.08 1.24 8.14 -51.94 -0.42 0.82 16 35 H 0.07 1.01 7.15 -51.93 -0.37 0.64 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 41 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 46 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 47 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -32.30 382.26 -9.79 -42.09 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.74 Total: -2.79 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.25 Total: 1.05 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.62 Total: -53.69 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.30 -9.79 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.934 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds