Wall clock time and date at job start Tue Mar 31 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00331 * 2 1 4 4 H 1.08001 * 120.00205 * 203.31610 * 3 2 1 5 5 C 1.38806 * 120.00022 * 23.32024 * 3 2 1 6 6 N 1.31621 * 119.99996 * 14.41141 * 5 3 2 7 7 Si 1.86805 * 120.00076 * 194.41777 * 5 3 2 8 8 H 1.48496 * 109.46906 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47227 * 119.99580 * 7 5 3 10 10 H 1.48500 * 109.46705 * 239.99556 * 7 5 3 11 11 C 1.46502 * 119.99703 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47460 * 89.99909 * 11 2 1 13 13 H 1.09002 * 110.88391 * 57.42471 * 12 11 2 14 14 C 1.55155 * 111.00286 * 293.55024 * 12 11 2 15 15 C 1.54323 * 102.93946 * 206.42281 * 14 12 11 16 16 N 1.47025 * 107.27398 * 22.19300 * 15 14 12 17 17 C 1.34773 * 125.64932 * 181.02818 * 16 15 14 18 18 O 1.21277 * 120.00099 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00216 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47194 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46830 * 180.02562 * 20 19 17 22 22 C 1.38666 * 120.42297 * 90.00365 * 21 20 19 23 23 C 1.38627 * 118.42446 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.15850 * 359.97438 * 23 22 21 25 25 N 1.31849 * 120.76455 * 0.02562 * 24 23 22 26 26 C 1.31886 * 121.72647 * 359.70971 * 25 24 23 27 27 C 1.47428 * 108.69978 * 1.28435 * 16 15 14 28 28 H 1.08998 * 109.47053 * 275.19320 * 1 2 3 29 29 H 1.09009 * 109.46384 * 35.18372 * 1 2 3 30 30 H 1.08990 * 109.47354 * 155.18419 * 1 2 3 31 31 H 0.97008 * 119.99714 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46876 * 329.99625 * 11 2 1 33 33 H 1.09003 * 109.46809 * 209.99956 * 11 2 1 34 34 H 1.08988 * 110.72429 * 88.05713 * 14 12 11 35 35 H 1.09002 * 110.71771 * 324.78302 * 14 12 11 36 36 H 1.08997 * 109.88193 * 262.77214 * 15 14 12 37 37 H 1.08999 * 110.01033 * 141.67954 * 15 14 12 38 38 H 1.09000 * 109.46899 * 60.00028 * 19 17 16 39 39 H 1.09006 * 109.47251 * 300.00427 * 19 17 16 40 40 H 1.08997 * 109.47296 * 300.00008 * 20 19 17 41 41 H 1.08994 * 109.47032 * 60.00103 * 20 19 17 42 42 H 1.08001 * 120.78937 * 0.02562 * 22 21 20 43 43 H 1.07995 * 120.42220 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.61439 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.62143 * 180.30921 * 26 25 24 46 46 H 1.08998 * 110.36132 * 94.48823 * 27 16 15 47 47 H 1.08998 * 110.36340 * 216.80508 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1636 1.2241 -0.3702 5 6 1.5408 2.3389 0.4759 6 7 0.4323 2.2549 1.1805 7 14 2.2945 4.0099 0.1161 8 1 3.5299 3.8327 -0.6887 9 1 1.3233 4.8379 -0.6430 10 1 2.6298 4.6872 1.3944 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9451 -1.9920 14 6 1.1224 -2.0615 -2.1606 15 6 1.5675 -3.0733 -3.2374 16 7 2.8440 -3.6512 -2.7924 17 6 3.5709 -4.5637 -3.4672 18 8 4.6136 -4.9727 -3.0022 19 6 3.0879 -5.0760 -4.7996 20 6 4.0894 -6.0945 -5.3479 21 6 3.6066 -6.6062 -6.6807 22 6 3.9741 -5.9650 -7.8540 23 6 3.5059 -6.4707 -9.0568 24 6 2.6945 -7.5898 -9.0467 25 7 2.3654 -8.1739 -7.9115 26 6 2.7964 -7.7235 -6.7493 27 6 3.1942 -3.0718 -1.4828 28 1 -0.3633 0.0930 1.0234 29 1 -0.3632 0.8400 -0.5922 30 1 -0.3633 -0.9327 -0.4313 31 1 0.0066 3.0608 1.5128 32 1 1.6083 -2.0286 0.5130 33 1 3.1499 -1.1387 0.5133 34 1 0.6865 -1.1750 -2.6211 35 1 0.4195 -2.5217 -1.4660 36 1 1.7037 -2.5637 -4.1912 37 1 0.8205 -3.8603 -3.3412 38 1 2.9967 -4.2436 -5.4975 39 1 2.1160 -5.5535 -4.6748 40 1 5.0614 -5.6174 -5.4728 41 1 4.1801 -6.9267 -4.6500 42 1 4.6099 -5.0923 -7.8313 43 1 3.7724 -5.9969 -9.9900 44 1 2.3253 -7.9897 -9.9795 45 1 2.5096 -8.2315 -5.8403 46 1 2.8476 -3.7187 -0.6769 47 1 4.2710 -2.9190 -1.4113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753350457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:29 Heat of formation + Delta-G solvation = -3.380291 kcal Electronic energy + Delta-G solvation = -25691.179817 eV Core-core repulsion = 22066.406268 eV Total energy + Delta-G solvation = -3624.773549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32170 -40.86643 -38.98220 -37.07055 -35.52668 -33.95835 -32.97114 -32.19559 -30.90508 -30.34353 -27.94846 -27.41719 -25.79704 -24.46665 -24.03758 -22.93658 -22.34997 -21.19274 -20.09377 -18.63467 -18.24303 -17.85046 -17.52148 -17.24477 -16.77323 -16.50168 -16.05964 -15.56039 -15.44410 -15.15761 -14.84893 -14.62759 -14.40452 -14.30974 -14.10318 -13.91855 -13.68356 -13.61075 -13.39665 -13.10017 -12.88905 -12.79267 -12.55892 -12.53010 -12.47236 -12.15544 -12.02992 -11.95570 -11.71224 -11.60021 -11.36172 -10.98541 -10.69285 -10.61097 -10.36019 -9.87417 -9.64600 -8.72500 -7.80456 -5.29087 0.17848 0.36769 1.45506 1.47698 1.57279 1.61654 2.00819 2.51941 2.88597 3.31573 3.36694 3.56650 3.68695 3.75357 3.89180 3.93549 4.00191 4.05899 4.11471 4.14585 4.27454 4.32166 4.37565 4.45359 4.56791 4.62307 4.66952 4.70350 4.85525 4.86020 4.88456 4.95238 4.97465 5.05613 5.11970 5.14992 5.23601 5.28983 5.31227 5.38709 5.40453 5.51399 5.66873 5.76792 5.81827 6.35780 6.55874 7.05637 7.13360 7.18688 7.91652 8.34065 9.21715 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.002123 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.842670 B =13184.181991 C =13372.298109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.614 5.614 3 C -0.256 4.256 4 H 0.066 0.934 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.963 3.037 8 H -0.268 1.268 9 H -0.291 1.291 10 H -0.295 1.295 11 C 0.161 3.839 12 C -0.107 4.107 13 H 0.061 0.939 14 C -0.113 4.113 15 C 0.104 3.896 16 N -0.619 5.619 17 C 0.521 3.479 18 O -0.588 6.588 19 C -0.119 4.119 20 C -0.054 4.054 21 C -0.134 4.134 22 C -0.079 4.079 23 C -0.167 4.167 24 C 0.079 3.921 25 N -0.514 5.514 26 C 0.088 3.912 27 C 0.115 3.885 28 H -0.002 1.002 29 H 0.011 0.989 30 H 0.043 0.957 31 H 0.247 0.753 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.174 0.826 45 H 0.162 0.838 46 H 0.072 0.928 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -18.007 -19.903 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.337 5.337 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.792 3.208 8 H -0.193 1.193 9 H -0.218 1.218 10 H -0.222 1.222 11 C 0.034 3.966 12 C -0.129 4.129 13 H 0.080 0.920 14 C -0.151 4.151 15 C -0.018 4.018 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.469 6.469 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.186 4.186 24 C -0.077 4.077 25 N -0.223 5.223 26 C -0.069 4.069 27 C -0.008 4.008 28 H 0.017 0.983 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.191 0.809 45 H 0.180 0.820 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.568 -18.901 -19.662 27.395 hybrid contribution 0.803 2.070 0.421 2.259 sum 3.371 -16.832 -19.241 25.786 Atomic orbital electron populations 1.20585 0.82575 0.96342 0.97371 1.44062 1.02131 1.01358 1.86106 1.19477 0.98468 0.86872 1.33798 0.91579 1.25735 0.98897 1.01696 0.98620 1.70239 1.22025 1.27441 1.38773 0.85261 0.77941 0.80527 0.77066 1.19283 1.21764 1.22204 1.20742 0.95550 0.87139 0.93164 1.22869 0.96442 0.94525 0.99028 0.92001 1.22562 0.96831 0.98439 0.97264 1.22227 0.84406 0.96802 0.98321 1.48709 1.23952 1.41511 1.20980 1.20963 0.82937 0.77660 0.87209 1.90685 1.25474 1.59713 1.71076 1.21622 1.01316 1.00710 0.92194 1.20161 0.98232 0.98578 0.92253 1.20874 0.99314 0.97172 0.96190 1.21858 0.97506 0.99314 0.91821 1.22466 0.98575 0.97628 0.99973 1.23224 0.94711 0.93043 0.96766 1.67704 1.22946 1.32172 0.99468 1.22917 0.93897 0.93772 0.96266 1.22187 0.99537 0.93743 0.85336 0.98333 0.97006 0.93875 0.94381 0.92844 0.94285 0.90692 0.90366 0.90020 0.88902 0.87149 0.86884 0.90644 0.90477 0.83189 0.82121 0.80861 0.82036 0.90936 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.18 8.61 127.77 1.10 9.28 16 2 N -0.61 -29.18 2.84 -726.94 -2.06 -31.25 16 3 C -0.26 -13.69 9.64 84.03 0.81 -12.88 16 4 H 0.07 3.48 7.87 -2.91 -0.02 3.46 16 5 C -0.05 -3.02 5.07 84.86 0.43 -2.59 16 6 N -0.94 -54.96 10.81 21.65 0.23 -54.73 16 7 Si 0.96 44.72 29.58 68.60 2.03 46.75 16 8 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 C 0.16 6.05 5.16 86.38 0.45 6.50 16 12 C -0.11 -3.29 3.31 -9.33 -0.03 -3.32 16 13 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.11 -2.84 5.02 31.78 0.16 -2.68 16 15 C 0.10 1.97 6.48 86.73 0.56 2.53 16 16 N -0.62 -14.78 3.32 -811.37 -2.70 -17.48 16 17 C 0.52 12.59 7.85 87.66 0.69 13.28 16 18 O -0.59 -19.02 16.24 -3.02 -0.05 -19.07 16 19 C -0.12 -1.79 4.87 29.85 0.15 -1.64 16 20 C -0.05 -0.83 4.66 29.85 0.14 -0.70 16 21 C -0.13 -1.92 5.15 -19.77 -0.10 -2.02 16 22 C -0.08 -0.96 9.86 22.47 0.22 -0.74 16 23 C -0.17 -1.77 10.11 22.36 0.23 -1.55 16 24 C 0.08 1.06 11.18 84.69 0.95 2.01 16 25 N -0.51 -9.41 10.36 -195.84 -2.03 -11.44 16 26 C 0.09 1.42 10.86 84.67 0.92 2.34 16 27 C 0.12 3.20 6.38 86.93 0.55 3.75 16 28 H 0.00 -0.09 7.32 -2.39 -0.02 -0.10 16 29 H 0.01 0.58 7.40 -2.38 -0.02 0.56 16 30 H 0.04 1.61 6.16 -2.39 -0.01 1.60 16 31 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 32 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 33 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.90 7.15 -2.39 -0.02 1.89 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.29 8.05 -2.39 -0.02 1.28 16 41 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 42 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 44 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 46 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 47 H 0.06 1.83 8.03 -2.39 -0.02 1.81 16 Total: -1.00 -70.94 382.26 3.58 -67.36 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.93 Total: 8.26 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.22 Total: 11.60 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -6.56 Total: -114.90 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.94 3.58 -67.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.981 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds