Wall clock time and date at job start Tue Mar 31 2020 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00435 * 2 1 4 4 C 1.50705 * 109.46552 * 66.04627 * 3 2 1 5 5 O 1.21275 * 120.00490 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99823 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46877 * 180.02562 * 7 6 4 9 9 C 1.53950 * 113.74237 * 86.25986 * 8 7 6 10 10 N 1.47805 * 86.03824 * 90.88049 * 9 8 7 11 11 C 1.36942 * 134.45487 * 204.64668 * 10 9 8 12 12 H 1.08002 * 119.99602 * 179.86453 * 11 10 9 13 13 C 1.38807 * 120.00184 * 359.86555 * 11 10 9 14 14 N 1.31617 * 119.99858 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00250 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47116 * 59.99643 * 15 13 11 17 17 H 1.48494 * 109.47098 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46650 * 300.00031 * 15 13 11 19 19 C 1.47582 * 91.05413 * 24.54887 * 10 9 8 20 20 C 1.46899 * 110.99814 * 236.04740 * 2 1 3 21 21 C 1.50695 * 109.47552 * 293.95448 * 20 2 1 22 22 C 1.38229 * 120.00308 * 269.73069 * 21 20 2 23 23 C 1.38236 * 120.00428 * 179.76439 * 22 21 20 24 24 C 1.38236 * 119.99842 * 0.50317 * 23 22 21 25 25 C 1.38238 * 119.99787 * 359.74592 * 24 23 22 26 26 C 1.38232 * 120.00141 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47125 * 59.99210 * 1 2 3 28 28 H 1.08998 * 109.47675 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46937 * 299.99728 * 1 2 3 30 30 H 1.09002 * 109.47209 * 306.05122 * 3 2 1 31 31 H 1.08997 * 109.47497 * 186.04720 * 3 2 1 32 32 H 0.97000 * 120.00410 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47568 * 60.00247 * 7 6 4 34 34 H 1.08998 * 109.47248 * 299.99470 * 7 6 4 35 35 H 1.09002 * 112.94408 * 314.66403 * 8 7 6 36 36 H 1.08999 * 113.76704 * 205.14826 * 9 8 7 37 37 H 1.09002 * 113.76463 * 336.53620 * 9 8 7 38 38 H 0.97002 * 120.00155 * 180.02562 * 14 13 11 39 39 H 1.08999 * 113.77186 * 221.15323 * 19 10 9 40 40 H 1.09004 * 113.76624 * 89.74800 * 19 10 9 41 41 H 1.09006 * 109.47369 * 53.95761 * 20 2 1 42 42 H 1.08999 * 109.47123 * 173.95216 * 20 2 1 43 43 H 1.08011 * 119.99908 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.00175 * 180.22897 * 23 22 21 45 45 H 1.07994 * 120.00340 * 179.72808 * 24 23 22 46 46 H 1.07995 * 120.00215 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.00424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0181 3.3201 1.5234 7 6 1.6701 3.9767 2.7860 8 6 2.2173 5.4055 2.7854 9 6 1.2732 6.4306 2.1312 10 7 0.7119 6.6242 3.4848 11 6 -0.4936 7.0555 3.9705 12 1 -0.6594 7.1061 5.0365 13 6 -1.5026 7.4275 3.0928 14 7 -1.3007 7.3653 1.7937 15 14 -3.1468 8.0165 3.7554 16 1 -2.9386 9.2235 4.5950 17 1 -4.0458 8.3515 2.6220 18 1 -3.7629 6.9430 4.5759 19 6 1.9709 6.1640 4.1023 20 6 1.9953 -0.7660 -1.1376 21 6 1.6368 -2.2204 -0.9730 22 6 2.4963 -3.0729 -0.3057 23 6 2.1652 -4.4060 -0.1505 24 6 0.9794 -4.8889 -0.6716 25 6 0.1223 -4.0374 -1.3434 26 6 0.4512 -2.7033 -1.4945 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.5611 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.5228 3.8016 0.8494 33 1 2.1051 3.4210 3.6166 34 1 0.5859 4.0034 2.8948 35 1 3.2458 5.4665 2.4296 36 1 1.7838 7.3094 1.7375 37 1 0.5715 5.9914 1.4220 38 1 -2.0056 7.6257 1.1803 39 1 1.8252 5.5125 4.9639 40 1 2.6870 6.9645 4.2887 41 1 1.5610 -0.3872 -2.0629 42 1 3.0796 -0.6611 -1.1757 43 1 3.4251 -2.6967 0.0973 44 1 2.8351 -5.0712 0.3741 45 1 0.7227 -5.9313 -0.5542 46 1 -0.8040 -4.4147 -1.7509 47 1 -0.2183 -2.0382 -2.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753415568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:26 Heat of formation + Delta-G solvation = 57.215951 kcal Electronic energy + Delta-G solvation = -25712.342413 eV Core-core repulsion = 22090.196514 eV Total energy + Delta-G solvation = -3622.145899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94522 -39.32200 -38.08257 -36.64054 -34.12580 -32.16293 -31.92882 -31.11588 -29.19966 -27.78790 -27.19244 -25.57232 -24.78171 -23.16273 -22.68604 -22.14201 -20.99607 -20.18746 -18.65147 -17.12963 -16.78331 -16.63603 -16.10892 -15.96986 -15.41653 -15.36505 -14.92010 -14.79256 -14.49288 -14.21701 -13.79045 -13.59871 -13.57285 -13.03525 -12.84370 -12.77614 -12.53930 -12.51153 -12.06849 -11.74589 -11.55186 -11.42593 -11.20261 -11.15230 -11.07414 -10.97837 -10.68484 -10.50662 -9.91345 -9.74609 -9.53055 -9.38957 -9.08814 -9.00772 -8.77818 -8.63388 -8.37412 -6.85992 -5.74735 -3.06409 1.12301 1.22123 2.92615 3.21665 3.41871 3.45854 3.46723 3.61972 4.09998 4.48338 4.53164 4.62946 4.80651 4.88909 4.90288 5.04735 5.13226 5.19145 5.23941 5.25972 5.32662 5.37231 5.39699 5.43079 5.56278 5.58978 5.63805 5.79284 5.84841 6.00518 6.15882 6.19704 6.25451 6.31544 6.35060 6.41691 6.53238 6.65267 6.70930 6.75801 6.81924 6.87533 6.90769 7.19936 7.32388 7.57525 7.84247 8.00405 8.56035 9.06955 9.73472 10.62039 11.42432 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.002295 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.804090 B =12198.226321 C =12957.760946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.035 3.965 4 C 0.510 3.490 5 O -0.525 6.525 6 N -0.724 5.724 7 C 0.151 3.849 8 C -0.155 4.155 9 C 0.166 3.834 10 N -0.611 5.611 11 C -0.221 4.221 12 H 0.079 0.921 13 C -0.008 4.008 14 N -0.923 5.923 15 Si 0.911 3.089 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.127 3.873 20 C 0.092 3.908 21 C -0.074 4.074 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.112 4.112 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.397 0.603 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.313 -19.887 -9.716 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.241 5.241 3 C -0.096 4.096 4 C 0.295 3.705 5 O -0.401 6.401 6 N -0.376 5.376 7 C 0.028 3.972 8 C -0.175 4.175 9 C 0.041 3.959 10 N -0.338 5.338 11 C -0.349 4.349 12 H 0.096 0.904 13 C -0.205 4.205 14 N -0.570 5.570 15 Si 0.741 3.259 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.000 4.000 20 C -0.035 4.035 21 C -0.075 4.075 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.131 4.131 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.660 -20.413 -8.681 24.194 hybrid contribution -0.922 1.231 -0.751 1.712 sum 8.738 -19.182 -9.432 23.093 Atomic orbital electron populations 1.22668 0.86204 1.02607 1.01902 1.61657 1.09244 1.11464 1.41765 1.22001 1.01816 0.89891 0.95871 1.20332 0.79807 0.81630 0.88708 1.90676 1.38902 1.64131 1.46399 1.46004 1.57672 1.13329 1.20598 1.21034 1.01559 0.90559 0.84075 1.23447 0.98607 0.94636 1.00769 1.22346 0.91268 0.92380 0.89950 1.46044 1.08017 1.77628 1.02113 1.18982 0.87371 1.36826 0.91730 0.90362 1.24755 0.98357 1.01971 0.95378 1.69795 1.32959 1.53734 1.00538 0.86219 0.83544 0.78649 0.77494 1.21240 1.21607 1.21047 1.22523 0.88950 0.94359 0.94167 1.21096 1.00466 0.90065 0.91912 1.19691 0.94835 0.94837 0.98127 1.21031 0.99667 0.93206 0.97650 1.21153 0.97159 0.95716 1.00011 1.21145 0.94746 0.99676 0.98482 1.21111 0.99607 0.93701 0.99650 1.21084 0.96308 0.95641 1.00069 0.96081 0.91136 0.88969 0.91776 0.88019 0.76960 0.92363 0.90136 0.91598 0.95646 0.90742 0.93714 0.93643 0.94575 0.93801 0.89812 0.85956 0.86147 0.86304 0.86202 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.86 60.06 0.53 0.71 16 2 N -0.52 -6.24 4.49 -245.83 -1.10 -7.35 16 3 C 0.04 0.39 5.45 -4.97 -0.03 0.36 16 4 C 0.51 7.79 7.55 -10.98 -0.08 7.71 16 5 O -0.53 -10.28 14.31 5.56 0.08 -10.20 16 6 N -0.72 -10.50 5.56 -60.29 -0.33 -10.84 16 7 C 0.15 2.67 5.42 -4.04 -0.02 2.65 16 8 C -0.15 -2.73 3.99 -89.69 -0.36 -3.09 16 9 C 0.17 3.76 7.03 -2.84 -0.02 3.74 16 10 N -0.61 -15.56 3.59 -177.69 -0.64 -16.20 16 11 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 12 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 13 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 14 N -0.92 -27.42 11.39 55.49 0.63 -26.79 16 15 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.13 2.54 8.51 -2.96 -0.03 2.51 16 20 C 0.09 0.86 5.12 -4.98 -0.03 0.83 16 21 C -0.07 -0.74 4.89 -104.63 -0.51 -1.25 16 22 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.11 -1.06 7.91 -39.58 -0.31 -1.37 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.87 5.89 -51.93 -0.31 0.57 16 29 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 30 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.10 0.85 7.93 -51.93 -0.41 0.44 16 32 H 0.40 4.56 8.47 -40.82 -0.35 4.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.79 7.98 -51.93 -0.41 1.37 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.88 7.12 -51.93 -0.37 1.51 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 42 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 43 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.99 7.98 -52.49 -0.42 0.57 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -34.20 383.47 -10.89 -45.09 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.59 Total: 2.67 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.69 Total: 0.35 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -1.44 Total: -61.17 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.20 -10.89 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753415568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.308 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds