Wall clock time and date at job start Tue Mar 31 2020 11:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00435 * 2 1 4 4 C 1.50705 * 109.46552 * 66.04627 * 3 2 1 5 5 O 1.21275 * 120.00490 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99823 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46877 * 180.02562 * 7 6 4 9 9 C 1.53950 * 113.74237 * 86.25986 * 8 7 6 10 10 N 1.47805 * 86.03824 * 90.88049 * 9 8 7 11 11 C 1.36942 * 134.45487 * 204.64668 * 10 9 8 12 12 H 1.08002 * 119.99602 * 179.86453 * 11 10 9 13 13 C 1.38807 * 120.00184 * 359.86555 * 11 10 9 14 14 N 1.31617 * 119.99858 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00250 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47116 * 59.99643 * 15 13 11 17 17 H 1.48494 * 109.47098 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46650 * 300.00031 * 15 13 11 19 19 C 1.47582 * 91.05413 * 24.54887 * 10 9 8 20 20 C 1.46899 * 110.99814 * 236.04740 * 2 1 3 21 21 C 1.50695 * 109.47552 * 293.95448 * 20 2 1 22 22 C 1.38229 * 120.00308 * 269.73069 * 21 20 2 23 23 C 1.38236 * 120.00428 * 179.76439 * 22 21 20 24 24 C 1.38236 * 119.99842 * 0.50317 * 23 22 21 25 25 C 1.38238 * 119.99787 * 359.74592 * 24 23 22 26 26 C 1.38232 * 120.00141 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47125 * 59.99210 * 1 2 3 28 28 H 1.08998 * 109.47675 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46937 * 299.99728 * 1 2 3 30 30 H 1.09002 * 109.47209 * 306.05122 * 3 2 1 31 31 H 1.08997 * 109.47497 * 186.04720 * 3 2 1 32 32 H 0.97000 * 120.00410 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47568 * 60.00247 * 7 6 4 34 34 H 1.08998 * 109.47248 * 299.99470 * 7 6 4 35 35 H 1.09002 * 112.94408 * 314.66403 * 8 7 6 36 36 H 1.08999 * 113.76704 * 205.14826 * 9 8 7 37 37 H 1.09002 * 113.76463 * 336.53620 * 9 8 7 38 38 H 0.97002 * 120.00155 * 180.02562 * 14 13 11 39 39 H 1.08999 * 113.77186 * 221.15323 * 19 10 9 40 40 H 1.09004 * 113.76624 * 89.74800 * 19 10 9 41 41 H 1.09006 * 109.47369 * 53.95761 * 20 2 1 42 42 H 1.08999 * 109.47123 * 173.95216 * 20 2 1 43 43 H 1.08011 * 119.99908 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.00175 * 180.22897 * 23 22 21 45 45 H 1.07994 * 120.00340 * 179.72808 * 24 23 22 46 46 H 1.07995 * 120.00215 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.00424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0181 3.3201 1.5234 7 6 1.6701 3.9767 2.7860 8 6 2.2173 5.4055 2.7854 9 6 1.2732 6.4306 2.1312 10 7 0.7119 6.6242 3.4848 11 6 -0.4936 7.0555 3.9705 12 1 -0.6594 7.1061 5.0365 13 6 -1.5026 7.4275 3.0928 14 7 -1.3007 7.3653 1.7937 15 14 -3.1468 8.0165 3.7554 16 1 -2.9386 9.2235 4.5950 17 1 -4.0458 8.3515 2.6220 18 1 -3.7629 6.9430 4.5759 19 6 1.9709 6.1640 4.1023 20 6 1.9953 -0.7660 -1.1376 21 6 1.6368 -2.2204 -0.9730 22 6 2.4963 -3.0729 -0.3057 23 6 2.1652 -4.4060 -0.1505 24 6 0.9794 -4.8889 -0.6716 25 6 0.1223 -4.0374 -1.3434 26 6 0.4512 -2.7033 -1.4945 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.5611 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.5228 3.8016 0.8494 33 1 2.1051 3.4210 3.6166 34 1 0.5859 4.0034 2.8948 35 1 3.2458 5.4665 2.4296 36 1 1.7838 7.3094 1.7375 37 1 0.5715 5.9914 1.4220 38 1 -2.0056 7.6257 1.1803 39 1 1.8252 5.5125 4.9639 40 1 2.6870 6.9645 4.2887 41 1 1.5610 -0.3872 -2.0629 42 1 3.0796 -0.6611 -1.1757 43 1 3.4251 -2.6967 0.0973 44 1 2.8351 -5.0712 0.3741 45 1 0.7227 -5.9313 -0.5542 46 1 -0.8040 -4.4147 -1.7509 47 1 -0.2183 -2.0382 -2.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753415568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:25 Heat of formation + Delta-G solvation = 34.007065 kcal Electronic energy + Delta-G solvation = -25713.348826 eV Core-core repulsion = 22090.196514 eV Total energy + Delta-G solvation = -3623.152312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01465 -40.24170 -39.63231 -37.58619 -35.56087 -34.15731 -32.69026 -31.76558 -30.69068 -29.20454 -28.07010 -27.08359 -26.49778 -24.40767 -23.64687 -23.33584 -21.73261 -21.43296 -20.23066 -18.73898 -18.08453 -17.48136 -17.32057 -17.03048 -16.81799 -16.37957 -16.15458 -15.90734 -15.73741 -15.53022 -15.25148 -14.84173 -14.49765 -14.25260 -14.12379 -13.91184 -13.65517 -13.40467 -13.30282 -12.95147 -12.89181 -12.77425 -12.69435 -12.59827 -12.43606 -12.26496 -11.88954 -11.81430 -11.79090 -11.47646 -11.27948 -10.88294 -10.70795 -9.97834 -9.75501 -9.69109 -9.24706 -8.88525 -7.90328 -5.21411 0.45082 0.55710 1.42449 1.45807 1.51283 1.74252 2.15183 2.47199 2.82655 3.25279 3.30961 3.45856 3.71626 3.84750 3.90931 3.99308 4.02881 4.20531 4.26709 4.32606 4.36108 4.40473 4.49660 4.54216 4.58925 4.64901 4.66682 4.75772 4.80243 4.83295 4.91650 5.03246 5.09245 5.13286 5.16126 5.20869 5.26738 5.50606 5.57805 5.59461 5.66809 5.67422 5.72586 5.91882 5.97462 6.04362 6.17850 6.71094 6.94134 7.40163 7.62554 8.58527 9.26292 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.002295 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.804090 B =12198.226321 C =12957.760946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.043 3.957 4 C 0.505 3.495 5 O -0.575 6.575 6 N -0.714 5.714 7 C 0.163 3.837 8 C -0.118 4.118 9 C 0.163 3.837 10 N -0.646 5.646 11 C -0.232 4.232 12 H 0.079 0.921 13 C -0.069 4.069 14 N -0.952 5.952 15 Si 0.973 3.027 16 H -0.276 1.276 17 H -0.293 1.293 18 H -0.281 1.281 19 C 0.123 3.877 20 C 0.096 3.904 21 C -0.090 4.090 22 C -0.111 4.111 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.125 4.125 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.116 0.884 36 H 0.023 0.977 37 H 0.041 0.959 38 H 0.247 0.753 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -20.648 -10.289 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.087 4.087 4 C 0.292 3.708 5 O -0.454 6.454 6 N -0.367 5.367 7 C 0.038 3.962 8 C -0.137 4.137 9 C 0.037 3.963 10 N -0.373 5.373 11 C -0.360 4.360 12 H 0.097 0.903 13 C -0.262 4.262 14 N -0.601 5.601 15 Si 0.801 3.199 16 H -0.202 1.202 17 H -0.220 1.220 18 H -0.207 1.207 19 C -0.002 4.002 20 C -0.031 4.031 21 C -0.091 4.091 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.144 4.144 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.252 0.748 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.134 0.866 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.637 -21.168 -9.263 25.871 hybrid contribution -1.481 1.402 -0.534 2.108 sum 10.156 -19.766 -9.797 24.287 Atomic orbital electron populations 1.22472 0.87453 1.02232 1.00439 1.61588 1.08379 1.12276 1.43655 1.22043 1.04023 0.89263 0.93398 1.21188 0.78550 0.81410 0.89690 1.90664 1.40997 1.65306 1.48408 1.45853 1.57529 1.13323 1.19975 1.20665 0.98273 0.91215 0.86006 1.23137 0.99804 0.92674 0.98110 1.22297 0.91655 0.93597 0.88705 1.46454 1.09004 1.77621 1.04212 1.19356 0.89063 1.35660 0.91970 0.90340 1.25551 1.01710 1.03116 0.95775 1.69972 1.33527 1.55186 1.01429 0.85234 0.79552 0.78327 0.76759 1.20204 1.21953 1.20742 1.22776 0.86956 0.95086 0.95363 1.21146 1.01529 0.89256 0.91142 1.19867 0.95216 0.95329 0.98643 1.21253 1.00130 0.93708 0.97891 1.21449 0.97651 0.95868 1.00003 1.21460 0.94582 1.00731 0.98012 1.21400 1.00368 0.93662 0.99638 1.21270 0.96488 0.96213 1.00402 0.95094 0.91006 0.92736 0.89947 0.84326 0.74821 0.91703 0.95508 0.86611 0.95880 0.94074 0.94451 0.93012 0.92320 0.92738 0.87837 0.85203 0.84452 0.84379 0.84651 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.86 127.69 1.13 1.71 16 2 N -0.53 -12.17 4.49 -931.66 -4.18 -16.35 16 3 C 0.04 0.86 5.45 85.56 0.47 1.32 16 4 C 0.50 15.03 7.55 87.66 0.66 15.69 16 5 O -0.57 -23.04 14.31 -3.01 -0.04 -23.08 16 6 N -0.71 -19.73 5.56 -463.05 -2.57 -22.30 16 7 C 0.16 5.69 5.42 86.38 0.47 6.15 16 8 C -0.12 -3.93 3.99 -10.13 -0.04 -3.97 16 9 C 0.16 7.37 7.03 86.44 0.61 7.98 16 10 N -0.65 -33.03 3.59 -716.10 -2.57 -35.60 16 11 C -0.23 -13.32 10.70 84.03 0.90 -12.42 16 12 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 13 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 14 N -0.95 -58.15 11.39 21.65 0.25 -57.90 16 15 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 C 0.12 4.73 8.51 86.49 0.74 5.47 16 20 C 0.10 1.58 5.12 85.56 0.44 2.01 16 21 C -0.09 -1.68 4.89 -19.87 -0.10 -1.77 16 22 C -0.11 -1.99 9.70 22.27 0.22 -1.78 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 25 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 26 C -0.13 -2.25 7.91 22.27 0.18 -2.07 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.80 5.89 -2.39 -0.01 1.78 16 29 H 0.05 1.85 5.88 -2.38 -0.01 1.83 16 30 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.14 1.75 7.93 -2.39 -0.02 1.73 16 32 H 0.42 8.41 8.47 -92.71 -0.79 7.62 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.03 1.23 7.98 -2.39 -0.02 1.21 16 35 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 2.13 7.12 -2.39 -0.02 2.11 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 0.79 8.07 -2.38 -0.02 0.77 16 42 H 0.10 1.28 7.87 -2.39 -0.02 1.26 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.12 1.98 7.98 -2.91 -0.02 1.96 16 Total: -1.00 -77.78 383.47 -0.12 -77.91 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.17 Total: 19.03 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.80 Total: 9.11 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -9.08 Total: -132.15 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.78 -0.12 -77.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753415568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.913 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds