Wall clock time and date at job start Tue Mar 31 2020 11:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47107 * 66.04798 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47194 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.96433 * 306.67678 * 8 7 6 10 10 C 1.53952 * 113.76988 * 175.00073 * 8 7 6 11 11 C 1.53947 * 86.28684 * 222.08958 * 10 8 7 12 12 N 1.47578 * 113.76998 * 78.50277 * 8 7 6 13 13 C 1.36938 * 134.49389 * 318.93723 * 12 8 7 14 14 H 1.07993 * 119.99937 * 0.02562 * 13 12 8 15 15 C 1.38816 * 119.99906 * 179.97438 * 13 12 8 16 16 N 1.31617 * 119.99983 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.46976 * 90.00583 * 17 15 13 19 19 H 1.48497 * 109.47281 * 210.00537 * 17 15 13 20 20 H 1.48504 * 109.47475 * 330.00675 * 17 15 13 21 21 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 22 22 C 1.50706 * 109.47293 * 293.95211 * 21 2 1 23 23 C 1.38233 * 119.99802 * 269.72866 * 22 21 2 24 24 C 1.38237 * 119.99942 * 179.81070 * 23 22 21 25 25 C 1.38234 * 119.99483 * 0.39277 * 24 23 22 26 26 C 1.38232 * 120.00305 * 359.86164 * 25 24 23 27 27 C 1.38230 * 120.00162 * 359.95310 * 26 25 24 28 28 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 29 29 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 31 31 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 32 32 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 33 33 H 0.97005 * 119.99463 * 359.97438 * 6 4 3 34 34 H 1.09002 * 109.47021 * 299.99722 * 7 6 4 35 35 H 1.09001 * 109.47001 * 59.99554 * 7 6 4 36 36 H 1.09000 * 113.74007 * 336.43261 * 10 8 7 37 37 H 1.08995 * 113.74196 * 107.63956 * 10 8 7 38 38 H 1.09008 * 113.76865 * 137.90687 * 11 10 8 39 39 H 1.08996 * 113.76900 * 269.30398 * 11 10 8 40 40 H 0.97005 * 119.99696 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.47466 * 53.95276 * 21 2 1 42 42 H 1.09000 * 109.46995 * 173.95474 * 21 2 1 43 43 H 1.08003 * 119.99864 * 359.97438 * 23 22 21 44 44 H 1.07992 * 119.99988 * 180.23636 * 24 23 22 45 45 H 1.08007 * 119.99805 * 179.83272 * 25 24 23 46 46 H 1.08008 * 120.00121 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0048 1.4456 2.1407 6 7 2.0180 3.3202 1.5234 7 6 1.6699 3.9768 2.7858 8 6 2.2181 5.4053 2.7858 9 1 3.2843 5.4516 2.5643 10 6 1.8042 6.2288 4.0189 11 6 1.5708 7.3927 3.0388 12 7 1.4037 6.3549 2.0029 13 6 0.7539 6.2965 0.7989 14 1 0.7850 5.3906 0.2120 15 6 0.0545 7.4016 0.3334 16 7 0.0163 8.5055 1.0490 17 14 -0.8323 7.3217 -1.3086 18 1 -2.2220 6.8420 -1.0979 19 1 -0.8631 8.6742 -1.9209 20 1 -0.1172 6.3853 -2.2125 21 6 1.9955 -0.7659 -1.1376 22 6 1.6370 -2.2204 -0.9729 23 6 2.4966 -3.0729 -0.3056 24 6 2.1660 -4.4062 -0.1511 25 6 0.9795 -4.8887 -0.6710 26 6 0.1223 -4.0374 -1.3428 27 6 0.4512 -2.7033 -1.4940 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8309 33 1 2.5233 3.8014 0.8495 34 1 0.5857 4.0034 2.8948 35 1 2.1051 3.4211 3.6165 36 1 0.8939 5.8711 4.5001 37 1 2.6173 6.4026 4.7236 38 1 0.6634 7.9620 3.2408 39 1 2.4466 8.0244 2.8904 40 1 -0.4722 9.2778 0.7235 41 1 1.5611 -0.3872 -2.0629 42 1 3.0797 -0.6611 -1.1756 43 1 3.4253 -2.6965 0.0974 44 1 2.8358 -5.0713 0.3736 45 1 0.7224 -5.9310 -0.5526 46 1 -0.8045 -4.4145 -1.7494 47 1 -0.2186 -2.0381 -2.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754504962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:30 Heat of formation + Delta-G solvation = 55.912230 kcal Electronic energy + Delta-G solvation = -26017.837701 eV Core-core repulsion = 22395.635269 eV Total energy + Delta-G solvation = -3622.202433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.89180 -39.25958 -38.00009 -36.59665 -33.98459 -32.21325 -31.91773 -31.09921 -29.02310 -27.92174 -27.26777 -26.67765 -23.38541 -23.28548 -22.67443 -21.89982 -20.94675 -20.11593 -19.08036 -17.29975 -16.82882 -16.40210 -16.09133 -15.91030 -15.35197 -15.32785 -15.06898 -14.68702 -14.31618 -14.18797 -13.82565 -13.58592 -13.45945 -13.13448 -12.90655 -12.80432 -12.57656 -12.20221 -11.88207 -11.70949 -11.53982 -11.36007 -11.17889 -11.13170 -11.10185 -11.00625 -10.77380 -10.55674 -10.01511 -9.77695 -9.60126 -9.28909 -9.07109 -8.98574 -8.82439 -8.55826 -8.32169 -6.91441 -5.78874 -3.11212 1.14306 1.23772 2.99169 3.28400 3.35095 3.39037 3.41972 3.66596 4.15525 4.40571 4.56355 4.65578 4.82232 4.92079 4.94920 5.08153 5.14008 5.20750 5.29469 5.31202 5.36571 5.38919 5.45401 5.60447 5.61653 5.62780 5.72980 5.81290 5.86783 5.91421 6.10663 6.19673 6.27057 6.31545 6.32970 6.40331 6.44231 6.61665 6.72148 6.79044 6.85715 6.93938 6.95002 7.23066 7.40177 7.57341 7.93803 7.96320 8.62984 9.01839 9.68735 10.57604 11.37951 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002675 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.705914 B =10464.553868 C =11599.312731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.516 5.516 3 C 0.034 3.966 4 C 0.511 3.489 5 O -0.533 6.533 6 N -0.716 5.716 7 C 0.126 3.874 8 C 0.126 3.874 9 H 0.049 0.951 10 C -0.156 4.156 11 C 0.158 3.842 12 N -0.603 5.603 13 C -0.218 4.218 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.091 3.909 22 C -0.073 4.073 23 C -0.097 4.097 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.113 4.113 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -20.603 -3.345 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.240 5.240 3 C -0.097 4.097 4 C 0.296 3.704 5 O -0.410 6.410 6 N -0.368 5.368 7 C 0.001 3.999 8 C 0.019 3.981 9 H 0.067 0.933 10 C -0.195 4.195 11 C 0.033 3.967 12 N -0.329 5.329 13 C -0.346 4.346 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.567 5.567 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.209 1.209 21 C -0.036 4.036 22 C -0.074 4.074 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.131 4.131 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.393 -21.095 -2.565 21.924 hybrid contribution -0.483 0.754 -2.115 2.297 sum 4.910 -20.341 -4.680 21.442 Atomic orbital electron populations 1.22661 0.86335 1.02473 1.01865 1.61673 1.09157 1.11524 1.41679 1.22008 1.01844 0.89787 0.96072 1.20324 0.79763 0.81699 0.88590 1.90641 1.39456 1.64372 1.46526 1.45952 1.57249 1.12960 1.20592 1.21716 1.01006 0.92645 0.84513 1.22502 0.94638 0.89225 0.91763 0.93344 1.23773 1.00303 0.99520 0.95913 1.22203 0.99280 0.91014 0.84178 1.46077 1.56242 1.10105 1.20525 1.18919 1.23628 0.97895 0.94120 0.90444 1.24761 1.01000 0.95941 0.98748 1.69817 1.45972 1.02954 1.37920 0.86200 0.79825 0.76766 0.83396 1.21605 1.21667 1.20855 1.21106 1.00521 0.90027 0.91989 1.19701 0.94799 0.94856 0.98017 1.21035 0.99669 0.93195 0.97657 1.21149 0.97150 0.95703 1.00051 1.21139 0.94758 0.99654 0.98546 1.21107 0.99616 0.93694 0.99669 1.21084 0.96330 0.95640 1.00065 0.96114 0.91203 0.89032 0.88053 0.91724 0.76493 0.91123 0.92255 0.90521 0.92803 0.90830 0.95573 0.93684 0.93791 0.89797 0.85947 0.86155 0.86317 0.86218 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.86 60.07 0.53 0.73 16 2 N -0.52 -6.68 4.49 -245.81 -1.10 -7.79 16 3 C 0.03 0.43 5.45 -4.98 -0.03 0.40 16 4 C 0.51 8.36 7.56 -10.98 -0.08 8.28 16 5 O -0.53 -10.52 14.31 5.56 0.08 -10.44 16 6 N -0.72 -11.71 5.53 -60.30 -0.33 -12.04 16 7 C 0.13 2.25 5.54 -4.05 -0.02 2.23 16 8 C 0.13 2.39 4.33 -66.86 -0.29 2.10 16 9 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.16 -2.84 7.86 -25.80 -0.20 -3.04 16 11 C 0.16 3.61 7.51 -2.97 -0.02 3.59 16 12 N -0.60 -14.53 3.57 -170.72 -0.61 -15.14 16 13 C -0.22 -5.78 10.51 -15.06 -0.16 -5.93 16 14 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -26.82 11.38 55.49 0.63 -26.19 16 17 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.09 0.93 5.12 -4.98 -0.03 0.91 16 22 C -0.07 -0.77 4.89 -104.62 -0.51 -1.28 16 23 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 27 C -0.11 -1.12 7.91 -39.59 -0.31 -1.43 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.89 5.88 -51.93 -0.31 0.58 16 30 H 0.09 1.50 5.88 -51.93 -0.31 1.20 16 31 H 0.10 1.02 7.93 -51.93 -0.41 0.61 16 32 H 0.06 0.78 8.12 -51.93 -0.42 0.35 16 33 H 0.40 6.10 8.47 -40.82 -0.35 5.76 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.87 7.15 -51.92 -0.37 1.50 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 47 H 0.12 1.06 7.98 -52.49 -0.42 0.64 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -32.37 383.69 -10.97 -43.34 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.60 Total: 5.32 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.80 Total: 0.38 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.42 Total: -61.16 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.37 -10.97 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754504962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.253 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds