Wall clock time and date at job start Tue Mar 31 2020 11:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47107 * 66.04798 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47194 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.96433 * 306.67678 * 8 7 6 10 10 C 1.53952 * 113.76988 * 175.00073 * 8 7 6 11 11 C 1.53947 * 86.28684 * 222.08958 * 10 8 7 12 12 N 1.47578 * 113.76998 * 78.50277 * 8 7 6 13 13 C 1.36938 * 134.49389 * 318.93723 * 12 8 7 14 14 H 1.07993 * 119.99937 * 0.02562 * 13 12 8 15 15 C 1.38816 * 119.99906 * 179.97438 * 13 12 8 16 16 N 1.31617 * 119.99983 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.46976 * 90.00583 * 17 15 13 19 19 H 1.48497 * 109.47281 * 210.00537 * 17 15 13 20 20 H 1.48504 * 109.47475 * 330.00675 * 17 15 13 21 21 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 22 22 C 1.50706 * 109.47293 * 293.95211 * 21 2 1 23 23 C 1.38233 * 119.99802 * 269.72866 * 22 21 2 24 24 C 1.38237 * 119.99942 * 179.81070 * 23 22 21 25 25 C 1.38234 * 119.99483 * 0.39277 * 24 23 22 26 26 C 1.38232 * 120.00305 * 359.86164 * 25 24 23 27 27 C 1.38230 * 120.00162 * 359.95310 * 26 25 24 28 28 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 29 29 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 31 31 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 32 32 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 33 33 H 0.97005 * 119.99463 * 359.97438 * 6 4 3 34 34 H 1.09002 * 109.47021 * 299.99722 * 7 6 4 35 35 H 1.09001 * 109.47001 * 59.99554 * 7 6 4 36 36 H 1.09000 * 113.74007 * 336.43261 * 10 8 7 37 37 H 1.08995 * 113.74196 * 107.63956 * 10 8 7 38 38 H 1.09008 * 113.76865 * 137.90687 * 11 10 8 39 39 H 1.08996 * 113.76900 * 269.30398 * 11 10 8 40 40 H 0.97005 * 119.99696 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.47466 * 53.95276 * 21 2 1 42 42 H 1.09000 * 109.46995 * 173.95474 * 21 2 1 43 43 H 1.08003 * 119.99864 * 359.97438 * 23 22 21 44 44 H 1.07992 * 119.99988 * 180.23636 * 24 23 22 45 45 H 1.08007 * 119.99805 * 179.83272 * 25 24 23 46 46 H 1.08008 * 120.00121 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0048 1.4456 2.1407 6 7 2.0180 3.3202 1.5234 7 6 1.6699 3.9768 2.7858 8 6 2.2181 5.4053 2.7858 9 1 3.2843 5.4516 2.5643 10 6 1.8042 6.2288 4.0189 11 6 1.5708 7.3927 3.0388 12 7 1.4037 6.3549 2.0029 13 6 0.7539 6.2965 0.7989 14 1 0.7850 5.3906 0.2120 15 6 0.0545 7.4016 0.3334 16 7 0.0163 8.5055 1.0490 17 14 -0.8323 7.3217 -1.3086 18 1 -2.2220 6.8420 -1.0979 19 1 -0.8631 8.6742 -1.9209 20 1 -0.1172 6.3853 -2.2125 21 6 1.9955 -0.7659 -1.1376 22 6 1.6370 -2.2204 -0.9729 23 6 2.4966 -3.0729 -0.3056 24 6 2.1660 -4.4062 -0.1511 25 6 0.9795 -4.8887 -0.6710 26 6 0.1223 -4.0374 -1.3428 27 6 0.4512 -2.7033 -1.4940 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8309 33 1 2.5233 3.8014 0.8495 34 1 0.5857 4.0034 2.8948 35 1 2.1051 3.4211 3.6165 36 1 0.8939 5.8711 4.5001 37 1 2.6173 6.4026 4.7236 38 1 0.6634 7.9620 3.2408 39 1 2.4466 8.0244 2.8904 40 1 -0.4722 9.2778 0.7235 41 1 1.5611 -0.3872 -2.0629 42 1 3.0797 -0.6611 -1.1756 43 1 3.4253 -2.6965 0.0974 44 1 2.8358 -5.0713 0.3736 45 1 0.7224 -5.9310 -0.5526 46 1 -0.8045 -4.4145 -1.7494 47 1 -0.2186 -2.0381 -2.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754504962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:29 Heat of formation + Delta-G solvation = 34.911687 kcal Electronic energy + Delta-G solvation = -26018.748353 eV Core-core repulsion = 22395.635269 eV Total energy + Delta-G solvation = -3623.113085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99172 -40.22406 -39.56645 -37.59828 -35.41843 -34.19072 -32.70635 -31.77676 -30.31576 -29.79559 -28.32995 -27.76771 -25.28429 -24.38238 -23.41133 -23.24058 -21.74042 -21.44591 -20.75297 -18.78048 -17.99777 -17.47976 -17.29631 -17.13409 -16.77333 -16.25381 -16.16942 -15.90840 -15.73434 -15.40725 -15.26320 -14.86516 -14.68776 -14.24233 -13.96550 -13.67526 -13.65092 -13.40992 -13.29644 -12.94284 -12.87849 -12.74361 -12.67017 -12.61468 -12.46172 -12.27256 -11.90003 -11.83273 -11.80301 -11.51870 -11.31616 -10.83566 -10.67329 -9.95358 -9.76533 -9.70572 -9.27692 -8.87370 -7.85836 -5.17316 0.43969 0.54698 1.43175 1.45311 1.52302 1.72601 2.16359 2.47807 2.81843 3.22968 3.35181 3.40229 3.82098 3.83651 3.97576 4.02476 4.17327 4.19600 4.24149 4.31035 4.33016 4.37333 4.38786 4.47287 4.57332 4.65346 4.66623 4.73498 4.73937 4.81855 4.89250 5.06942 5.07675 5.13040 5.14670 5.19868 5.35134 5.53074 5.58401 5.63206 5.65814 5.71592 5.76815 5.88596 5.99371 6.01765 6.16566 6.66937 6.96455 7.35791 7.66802 8.61795 9.31290 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.002675 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.705914 B =10464.553868 C =11599.312731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.040 3.960 4 C 0.508 3.492 5 O -0.571 6.571 6 N -0.714 5.714 7 C 0.136 3.864 8 C 0.134 3.866 9 H 0.073 0.927 10 C -0.133 4.133 11 C 0.149 3.851 12 N -0.630 5.630 13 C -0.210 4.210 14 H 0.087 0.913 15 C -0.074 4.074 16 N -0.956 5.956 17 Si 0.966 3.034 18 H -0.295 1.295 19 H -0.298 1.298 20 H -0.264 1.264 21 C 0.094 3.906 22 C -0.089 4.089 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.125 4.125 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.408 0.592 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.244 0.756 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 -22.740 -4.084 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.255 5.255 3 C -0.090 4.090 4 C 0.295 3.705 5 O -0.450 6.450 6 N -0.366 5.366 7 C 0.011 3.989 8 C 0.028 3.972 9 H 0.091 0.909 10 C -0.171 4.171 11 C 0.024 3.976 12 N -0.357 5.357 13 C -0.338 4.338 14 H 0.105 0.895 15 C -0.266 4.266 16 N -0.606 5.606 17 Si 0.796 3.204 18 H -0.223 1.223 19 H -0.225 1.225 20 H -0.188 1.188 21 C -0.032 4.032 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.971 -23.268 -3.315 24.515 hybrid contribution -0.929 1.323 -1.819 2.434 sum 6.042 -21.945 -5.134 23.334 Atomic orbital electron populations 1.22490 0.87270 1.02324 1.00495 1.61628 1.08528 1.11869 1.43441 1.22028 1.03742 0.89483 0.93789 1.21015 0.78683 0.81348 0.89480 1.90632 1.41043 1.65193 1.48150 1.45926 1.57225 1.13151 1.20255 1.21455 0.98940 0.92479 0.86045 1.22661 0.94961 0.88863 0.90670 0.90945 1.23573 1.01634 0.96232 0.95691 1.22171 0.97522 0.91991 0.85934 1.46434 1.57075 1.11968 1.20200 1.19310 1.22239 0.97667 0.94621 0.89545 1.25528 1.02898 0.96139 1.02045 1.70005 1.47638 1.03473 1.39485 0.85251 0.78415 0.76482 0.80283 1.22277 1.22512 1.18832 1.21151 1.01411 0.89520 0.91161 1.19833 0.95309 0.95103 0.98750 1.21244 1.00068 0.93762 0.97915 1.21449 0.97670 0.95757 0.99992 1.21468 0.94508 1.00763 0.97931 1.21400 1.00415 0.93551 0.99586 1.21256 0.96444 0.96289 1.00403 0.95419 0.90789 0.92304 0.84920 0.90693 0.75636 0.94452 0.90525 0.90612 0.88784 0.94440 0.95900 0.94664 0.93020 0.88126 0.85310 0.84360 0.84233 0.84543 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.86 127.69 1.13 1.72 16 2 N -0.53 -12.84 4.49 -931.61 -4.18 -17.02 16 3 C 0.04 0.92 5.45 85.56 0.47 1.38 16 4 C 0.51 15.91 7.56 87.66 0.66 16.57 16 5 O -0.57 -22.39 14.31 -3.02 -0.04 -22.43 16 6 N -0.71 -22.05 5.53 -463.07 -2.56 -24.61 16 7 C 0.14 4.67 5.54 86.38 0.48 5.14 16 8 C 0.13 4.81 4.33 45.09 0.20 5.01 16 9 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 10 C -0.13 -4.56 7.86 31.26 0.25 -4.31 16 11 C 0.15 6.82 7.51 86.48 0.65 7.47 16 12 N -0.63 -30.08 3.57 -694.04 -2.48 -32.56 16 13 C -0.21 -11.06 10.51 84.03 0.88 -10.17 16 14 H 0.09 4.28 7.80 -2.91 -0.02 4.26 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 16 N -0.96 -57.37 11.38 21.65 0.25 -57.13 16 17 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 C 0.09 1.73 5.12 85.56 0.44 2.16 16 22 C -0.09 -1.75 4.89 -19.86 -0.10 -1.84 16 23 C -0.11 -2.07 9.70 22.27 0.22 -1.85 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 27 C -0.13 -2.33 7.91 22.27 0.18 -2.15 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.86 5.88 -2.38 -0.01 1.84 16 30 H 0.06 1.96 5.88 -2.39 -0.01 1.95 16 31 H 0.13 2.20 7.93 -2.39 -0.02 2.18 16 32 H 0.08 1.59 8.12 -2.39 -0.02 1.58 16 33 H 0.41 11.43 8.47 -92.70 -0.79 10.64 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.04 1.97 7.15 -2.38 -0.02 1.95 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 41 H 0.05 0.87 8.07 -2.38 -0.02 0.85 16 42 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 46 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 47 H 0.12 2.06 7.98 -2.91 -0.02 2.04 16 Total: -1.00 -71.56 383.69 -0.24 -71.80 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.17 Total: 24.86 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.58 Total: 9.82 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -8.98 Total: -131.32 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.04 Total: -22.43 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.56 -0.24 -71.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754504962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.716 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds