Wall clock time and date at job start Tue Mar 31 2020 12:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 C 1.53004 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47256 * 175.00185 * 4 3 2 6 6 C 1.52999 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47166 * 300.00212 * 6 5 4 8 8 N 1.46905 * 109.46896 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99762 * 154.99825 * 8 7 6 10 10 C 1.50701 * 109.46725 * 179.97438 * 9 8 7 11 11 C 1.38307 * 119.92751 * 269.72227 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46912 * 90.00267 * 19 17 15 21 21 H 1.48504 * 109.46679 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47497 * 329.99962 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.47323 * 59.99970 * 7 6 5 26 26 C 1.52998 * 109.46841 * 295.00341 * 4 3 2 27 27 H 1.08993 * 109.47155 * 299.99718 * 1 2 3 28 28 H 1.09000 * 109.46899 * 60.00179 * 1 2 3 29 29 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47331 * 240.00477 * 2 1 3 31 31 H 1.08994 * 109.47428 * 120.00274 * 2 1 3 32 32 H 1.09002 * 109.47106 * 59.99976 * 3 2 1 33 33 H 1.09001 * 109.47459 * 300.00101 * 3 2 1 34 34 H 1.08997 * 109.47101 * 54.99898 * 4 3 2 35 35 H 1.08997 * 109.47301 * 59.99835 * 5 4 3 36 36 H 1.08999 * 109.46992 * 300.00053 * 5 4 3 37 37 H 1.09000 * 109.47106 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47187 * 60.00390 * 6 5 4 39 39 H 1.09006 * 109.46723 * 299.99646 * 7 6 5 40 40 H 1.00903 * 111.00010 * 31.04563 * 8 7 6 41 41 H 1.09004 * 109.47351 * 299.99678 * 9 8 7 42 42 H 1.08996 * 109.47247 * 60.00173 * 9 8 7 43 43 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 44 44 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 45 45 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 46 46 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 47 47 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 48 48 H 1.08997 * 109.47301 * 60.00026 * 25 7 6 49 49 H 1.08999 * 109.46643 * 180.02562 * 25 7 6 50 50 H 1.09010 * 109.47024 * 299.99965 * 26 4 3 51 51 H 1.09000 * 109.47793 * 59.99497 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8795 -0.1263 6 6 5.6099 2.8796 -0.1263 7 6 6.1200 2.2699 1.1810 8 7 7.5890 2.2705 1.1812 9 6 8.1152 2.2705 2.5527 10 6 9.6217 2.2705 2.5127 11 6 10.3116 1.0719 2.5001 12 6 11.6920 1.0687 2.4578 13 6 12.3876 2.2705 2.4398 14 8 13.7447 2.2705 2.4047 15 6 14.3536 3.4664 2.2735 16 1 13.7687 4.3742 2.2839 17 6 15.7307 3.5306 2.1253 18 7 16.4432 2.4246 2.1122 19 14 16.5743 5.1873 1.9442 20 1 16.9439 5.7039 3.2865 21 1 17.7993 5.0314 1.1193 22 1 15.6506 6.1436 1.2829 23 6 11.6920 3.4725 2.4583 24 6 10.3115 3.4691 2.4940 25 6 5.6100 0.8329 1.3066 26 6 4.0805 0.8327 1.3064 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.8532 -0.8427 35 1 3.7170 3.4688 0.7157 36 1 3.7162 3.3140 -1.0575 37 1 5.9732 3.9033 -0.2163 38 1 5.9733 2.2903 -0.9682 39 1 5.7566 2.8594 2.0228 40 1 7.9503 3.0522 0.6552 41 1 7.7653 3.1603 3.0762 42 1 7.7661 1.3803 3.0758 43 1 9.7703 0.1377 2.5194 44 1 12.2301 0.1324 2.4434 45 1 17.4065 2.4695 2.0089 46 1 12.2302 4.4088 2.4447 47 1 9.7700 4.4034 2.5080 48 1 5.9734 0.2435 0.4648 49 1 5.9731 0.3988 2.2382 50 1 3.7175 1.4220 2.1485 51 1 3.7172 -0.1911 1.3960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049543686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:09 Heat of formation + Delta-G solvation = -44.148261 kcal Electronic energy + Delta-G solvation = -25593.714196 eV Core-core repulsion = 22070.713159 eV Total energy + Delta-G solvation = -3523.001038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.51500 -38.95321 -37.00960 -35.85572 -33.82772 -32.27786 -30.97985 -30.74177 -30.12272 -28.64636 -25.98172 -25.24032 -23.80927 -23.16123 -21.91704 -21.67423 -20.64329 -20.37508 -19.86564 -17.95690 -16.99680 -15.96372 -15.71824 -15.16867 -14.91181 -14.70118 -14.51773 -14.46292 -14.21301 -14.05143 -13.63394 -13.53875 -13.46486 -13.15014 -12.69431 -12.65920 -12.49418 -12.40040 -12.19725 -12.08466 -11.74522 -11.60569 -11.36405 -11.25564 -11.23946 -11.19370 -10.89550 -10.79622 -10.69549 -10.59599 -10.57736 -10.41250 -10.19759 -10.08609 -9.31212 -8.82083 -8.30137 -8.13499 -7.15451 -6.43593 -4.02480 2.25626 2.31769 3.13105 3.14143 3.18962 3.97643 4.13880 4.36618 4.45816 4.57913 4.68502 4.73157 4.82175 4.96538 5.06593 5.10513 5.13442 5.24182 5.30650 5.31705 5.34252 5.35639 5.38090 5.42798 5.47078 5.53000 5.58279 5.63669 5.67056 5.76200 5.78949 5.82129 5.83757 5.90587 5.95628 5.99422 6.02835 6.08072 6.11476 6.18945 6.24602 6.33658 6.46165 6.74118 6.93429 7.06280 7.18190 7.30340 7.39593 7.46190 7.55629 7.86270 8.01529 9.02062 9.72820 10.74503 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.001837 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.784521 B =15240.458708 C =15649.264811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.121 4.121 7 C 0.088 3.912 8 N -0.682 5.682 9 C 0.119 3.881 10 C -0.183 4.183 11 C -0.052 4.052 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.107 4.107 26 C -0.114 4.114 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.341 0.659 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.503 -0.720 -3.300 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.148 4.148 6 C -0.159 4.159 7 C -0.022 4.022 8 N -0.314 5.314 9 C -0.009 4.009 10 C -0.185 4.185 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.145 4.145 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.160 0.840 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.120 0.880 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.024 -1.642 -3.375 27.284 hybrid contribution 0.310 1.843 0.187 1.879 sum -26.714 0.201 -3.188 26.905 Atomic orbital electron populations 1.21782 0.96151 1.01468 1.01642 1.21589 0.95544 0.97136 1.02178 1.21662 0.95100 0.96672 1.01807 1.21196 0.94577 0.96416 0.98441 1.21537 0.95177 0.96479 1.01633 1.21706 0.95473 1.00575 0.98132 1.21518 0.88015 0.96177 0.96509 1.60587 1.05836 1.50330 1.14634 1.20649 0.91719 0.99690 0.88839 1.19135 0.93544 0.93323 1.12465 1.20464 0.92736 0.96706 0.97189 1.20227 0.93493 0.96181 1.11464 1.19401 0.84873 0.93287 0.92271 1.83982 1.12925 1.32937 1.78369 1.21321 0.90501 0.83116 1.51876 0.89119 1.25284 0.95436 0.99235 0.96559 1.70038 1.06895 1.26952 1.45887 0.85718 0.78942 0.80181 0.78617 1.19909 1.20251 1.19238 1.21115 0.94134 0.98385 1.11751 1.20582 0.93631 0.96297 0.98016 1.21511 0.94106 0.96469 1.02391 1.21631 0.95725 1.00721 0.97123 0.92875 0.92909 0.92911 0.92109 0.91734 0.92138 0.92188 0.91108 0.92192 0.92010 0.92216 0.91038 0.94390 0.84003 0.95660 0.91266 0.87099 0.86590 0.92047 0.85682 0.88002 0.91314 0.92167 0.92358 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.78 5.69 -26.73 -0.15 -0.93 16 3 C -0.11 -0.74 4.68 -26.73 -0.13 -0.86 16 4 C -0.09 -0.64 2.19 -90.62 -0.20 -0.84 16 5 C -0.11 -0.84 5.20 -26.73 -0.14 -0.97 16 6 C -0.12 -1.09 5.19 -26.73 -0.14 -1.22 16 7 C 0.09 0.90 2.49 -67.71 -0.17 0.73 16 8 N -0.68 -8.61 6.30 -107.99 -0.68 -9.29 16 9 C 0.12 1.64 5.61 -4.97 -0.03 1.61 16 10 C -0.18 -3.15 5.40 -104.57 -0.56 -3.71 16 11 C -0.05 -0.96 9.69 -39.60 -0.38 -1.34 16 12 C -0.19 -4.19 9.99 -39.40 -0.39 -4.59 16 13 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 14 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 15 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.46 13.67 55.48 0.76 -24.71 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 24 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 25 C -0.11 -1.04 5.42 -26.76 -0.15 -1.19 16 26 C -0.11 -0.90 4.96 -26.76 -0.13 -1.03 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.40 7.80 -51.93 -0.40 0.00 16 40 H 0.34 4.35 8.34 -39.29 -0.33 4.02 16 41 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 42 H 0.07 0.92 7.38 -51.93 -0.38 0.53 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 47 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 50 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 51 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -29.65 398.77 -11.01 -40.66 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -9.07 Total: 5.06 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.01 Total: -28.17 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.08 Total: -34.00 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.65 -11.01 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049543686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.486 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds