Wall clock time and date at job start Tue Mar 31 2020 12:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 C 1.53004 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47256 * 175.00185 * 4 3 2 6 6 C 1.52999 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47166 * 300.00212 * 6 5 4 8 8 N 1.46905 * 109.46896 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99762 * 154.99825 * 8 7 6 10 10 C 1.50701 * 109.46725 * 179.97438 * 9 8 7 11 11 C 1.38307 * 119.92751 * 269.72227 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46912 * 90.00267 * 19 17 15 21 21 H 1.48504 * 109.46679 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47497 * 329.99962 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.47323 * 59.99970 * 7 6 5 26 26 C 1.52998 * 109.46841 * 295.00341 * 4 3 2 27 27 H 1.08993 * 109.47155 * 299.99718 * 1 2 3 28 28 H 1.09000 * 109.46899 * 60.00179 * 1 2 3 29 29 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47331 * 240.00477 * 2 1 3 31 31 H 1.08994 * 109.47428 * 120.00274 * 2 1 3 32 32 H 1.09002 * 109.47106 * 59.99976 * 3 2 1 33 33 H 1.09001 * 109.47459 * 300.00101 * 3 2 1 34 34 H 1.08997 * 109.47101 * 54.99898 * 4 3 2 35 35 H 1.08997 * 109.47301 * 59.99835 * 5 4 3 36 36 H 1.08999 * 109.46992 * 300.00053 * 5 4 3 37 37 H 1.09000 * 109.47106 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47187 * 60.00390 * 6 5 4 39 39 H 1.09006 * 109.46723 * 299.99646 * 7 6 5 40 40 H 1.00903 * 111.00010 * 31.04563 * 8 7 6 41 41 H 1.09004 * 109.47351 * 299.99678 * 9 8 7 42 42 H 1.08996 * 109.47247 * 60.00173 * 9 8 7 43 43 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 44 44 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 45 45 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 46 46 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 47 47 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 48 48 H 1.08997 * 109.47301 * 60.00026 * 25 7 6 49 49 H 1.08999 * 109.46643 * 180.02562 * 25 7 6 50 50 H 1.09010 * 109.47024 * 299.99965 * 26 4 3 51 51 H 1.09000 * 109.47793 * 59.99497 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8795 -0.1263 6 6 5.6099 2.8796 -0.1263 7 6 6.1200 2.2699 1.1810 8 7 7.5890 2.2705 1.1812 9 6 8.1152 2.2705 2.5527 10 6 9.6217 2.2705 2.5127 11 6 10.3116 1.0719 2.5001 12 6 11.6920 1.0687 2.4578 13 6 12.3876 2.2705 2.4398 14 8 13.7447 2.2705 2.4047 15 6 14.3536 3.4664 2.2735 16 1 13.7687 4.3742 2.2839 17 6 15.7307 3.5306 2.1253 18 7 16.4432 2.4246 2.1122 19 14 16.5743 5.1873 1.9442 20 1 16.9439 5.7039 3.2865 21 1 17.7993 5.0314 1.1193 22 1 15.6506 6.1436 1.2829 23 6 11.6920 3.4725 2.4583 24 6 10.3115 3.4691 2.4940 25 6 5.6100 0.8329 1.3066 26 6 4.0805 0.8327 1.3064 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.8532 -0.8427 35 1 3.7170 3.4688 0.7157 36 1 3.7162 3.3140 -1.0575 37 1 5.9732 3.9033 -0.2163 38 1 5.9733 2.2903 -0.9682 39 1 5.7566 2.8594 2.0228 40 1 7.9503 3.0522 0.6552 41 1 7.7653 3.1603 3.0762 42 1 7.7661 1.3803 3.0758 43 1 9.7703 0.1377 2.5194 44 1 12.2301 0.1324 2.4434 45 1 17.4065 2.4695 2.0089 46 1 12.2302 4.4088 2.4447 47 1 9.7700 4.4034 2.5080 48 1 5.9734 0.2435 0.4648 49 1 5.9731 0.3988 2.2382 50 1 3.7175 1.4220 2.1485 51 1 3.7172 -0.1911 1.3960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049543686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:09 Heat of formation + Delta-G solvation = -59.393553 kcal Electronic energy + Delta-G solvation = -25594.375282 eV Core-core repulsion = 22070.713159 eV Total energy + Delta-G solvation = -3523.662123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81953 -40.11941 -38.54507 -36.81165 -34.73151 -34.17703 -31.87426 -31.72008 -31.64149 -29.76482 -27.54469 -26.46220 -24.92850 -23.85715 -23.58211 -22.39691 -21.82695 -21.26351 -20.59440 -19.83532 -18.84833 -16.99896 -16.53393 -16.34961 -16.19318 -16.03204 -15.63181 -15.58862 -15.42018 -15.17137 -15.01136 -14.80917 -14.40016 -14.19452 -14.05885 -13.73798 -13.64607 -13.34286 -13.18223 -13.05935 -12.90264 -12.83392 -12.45906 -12.36489 -12.30266 -12.13406 -11.95866 -11.93596 -11.88247 -11.81900 -11.39494 -11.32603 -11.16751 -10.93640 -10.78271 -10.73193 -9.77101 -9.29056 -8.89386 -8.46745 -6.15128 0.61183 0.68611 1.34865 1.44263 1.52598 2.17955 2.78917 3.10575 3.43044 3.53268 3.76010 3.82559 3.97891 4.04484 4.06631 4.16998 4.20157 4.27808 4.36531 4.46047 4.46939 4.52310 4.59862 4.62333 4.67710 4.68433 4.71893 4.78285 4.81548 4.86205 5.00160 5.01166 5.07972 5.09790 5.15150 5.15949 5.18564 5.23795 5.31953 5.32276 5.36299 5.39082 5.44140 5.48238 5.57281 5.59749 5.67661 5.71962 5.82793 6.03287 6.18531 6.28330 6.53385 6.97828 7.79123 8.76557 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.001837 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.784521 B =15240.458708 C =15649.264811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.085 4.085 5 C -0.107 4.107 6 C -0.118 4.118 7 C 0.090 3.910 8 N -0.691 5.691 9 C 0.124 3.876 10 C -0.157 4.157 11 C -0.048 4.048 12 C -0.206 4.206 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.243 4.243 24 C -0.062 4.062 25 C -0.105 4.105 26 C -0.109 4.109 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.341 0.659 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.138 0.862 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.896 0.713 -3.348 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.019 4.019 8 N -0.323 5.323 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.067 4.067 12 C -0.226 4.226 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.262 4.262 24 C -0.081 4.081 25 C -0.143 4.143 26 C -0.147 4.147 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.160 0.840 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.490 -0.215 -3.419 30.682 hybrid contribution 0.991 1.284 0.208 1.635 sum -29.500 1.069 -3.211 29.693 Atomic orbital electron populations 1.21779 0.95710 1.01710 1.01824 1.21586 0.95950 0.96966 1.01965 1.21614 0.94287 0.96830 1.02046 1.21159 0.95212 0.96127 0.97838 1.21516 0.94041 0.96677 1.02223 1.21672 0.96460 1.00400 0.97032 1.21554 0.86384 0.96617 0.97322 1.60544 1.07472 1.50561 1.13729 1.20625 0.88704 1.01137 0.89939 1.19635 0.95816 0.92317 1.07991 1.20830 0.91332 0.98753 0.95750 1.20463 0.95032 0.95276 1.11790 1.19941 0.84058 0.95363 0.94342 1.83944 1.15146 1.33566 1.81420 1.21827 0.91329 0.83616 1.52265 0.88118 1.26602 0.95829 1.03759 0.95881 1.70188 1.07281 1.29841 1.48609 0.84579 0.77693 0.74778 0.79098 1.18765 1.19588 1.17672 1.21227 0.95767 0.97183 1.11996 1.20938 0.92157 0.98449 0.96550 1.21488 0.95371 0.95891 1.01543 1.21586 0.94338 1.01202 0.97544 0.92695 0.92726 0.92690 0.92401 0.91884 0.91926 0.91894 0.91791 0.91781 0.91279 0.91923 0.91949 0.93952 0.84012 0.94010 0.90149 0.84044 0.87112 0.91866 0.86403 0.84447 0.92513 0.92697 0.91994 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.32 5.69 30.59 0.17 -1.15 16 3 C -0.11 -1.15 4.68 30.59 0.14 -1.01 16 4 C -0.08 -1.04 2.19 -10.79 -0.02 -1.06 16 5 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 6 C -0.12 -1.81 5.19 30.59 0.16 -1.65 16 7 C 0.09 1.59 2.49 44.91 0.11 1.70 16 8 N -0.69 -15.22 6.30 -495.56 -3.12 -18.34 16 9 C 0.12 2.91 5.61 85.56 0.48 3.39 16 10 C -0.16 -4.91 5.40 -19.83 -0.11 -5.02 16 11 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 12 C -0.21 -9.07 9.99 22.39 0.22 -8.85 16 13 C 0.11 5.77 6.65 22.58 0.15 5.92 16 14 O -0.23 -14.39 9.76 -22.82 -0.22 -14.61 16 15 C -0.41 -24.49 9.49 67.92 0.64 -23.84 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 18 N -0.92 -57.21 13.67 21.61 0.30 -56.92 16 19 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 23 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 24 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 25 C -0.10 -1.79 5.42 30.58 0.17 -1.62 16 26 C -0.11 -1.45 4.96 30.58 0.15 -1.29 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.67 6.57 -2.39 -0.02 0.66 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.74 7.80 -2.38 -0.02 0.72 16 40 H 0.34 7.60 8.34 -89.69 -0.75 6.85 16 41 H 0.04 0.89 8.00 -2.38 -0.02 0.87 16 42 H 0.08 1.78 7.38 -2.39 -0.02 1.76 16 43 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 47 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 50 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.07 0.86 6.57 -2.39 -0.02 0.85 16 Total: -1.00 -68.38 398.77 3.37 -65.01 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.14 Total: 30.73 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 4.25 Total: -51.12 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -2.83 Total: -75.26 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.38 3.37 -65.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049543686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.616 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds