Wall clock time and date at job start Tue Mar 31 2020 12:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46962 * 2 1 4 4 C 1.53005 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47219 * 175.00087 * 4 3 2 6 6 C 1.52995 * 109.47215 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47006 * 299.99944 * 6 5 4 8 8 N 1.46902 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.46893 * 110.99726 * 154.99952 * 8 7 6 10 10 C 1.50707 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.38321 * 119.96235 * 269.72272 * 10 9 8 12 12 C 1.38280 * 120.13338 * 179.76522 * 11 10 9 13 13 C 1.38119 * 120.07318 * 0.51334 * 12 11 10 14 14 C 1.38853 * 119.92621 * 359.74165 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46905 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47463 * 120.00067 * 20 18 16 23 23 H 1.48498 * 109.46617 * 239.99942 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00049 * 10 9 8 25 25 C 1.53002 * 109.47087 * 59.99978 * 7 6 5 26 26 C 1.52996 * 109.46875 * 300.00060 * 25 7 6 27 27 H 1.09004 * 109.46906 * 59.99999 * 1 2 3 28 28 H 1.08997 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47174 * 300.00501 * 1 2 3 30 30 H 1.09004 * 109.47164 * 240.00056 * 2 1 3 31 31 H 1.08995 * 109.47045 * 119.99719 * 2 1 3 32 32 H 1.09004 * 109.47135 * 60.00038 * 3 2 1 33 33 H 1.09004 * 109.47311 * 299.99753 * 3 2 1 34 34 H 1.08993 * 109.47017 * 55.00116 * 4 3 2 35 35 H 1.09006 * 109.46895 * 59.99832 * 5 4 3 36 36 H 1.08997 * 109.46899 * 299.99903 * 5 4 3 37 37 H 1.09001 * 109.47058 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.47005 * 59.99481 * 6 5 4 39 39 H 1.08998 * 109.46626 * 300.00085 * 7 6 5 40 40 H 1.00895 * 110.99757 * 31.04267 * 8 7 6 41 41 H 1.08997 * 109.47275 * 60.00506 * 9 8 7 42 42 H 1.09001 * 109.47474 * 299.99960 * 9 8 7 43 43 H 1.07998 * 119.93523 * 0.02562 * 11 10 9 44 44 H 1.08002 * 119.96322 * 180.25843 * 12 11 10 45 45 H 1.08000 * 120.03646 * 179.76835 * 13 12 11 46 46 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 47 47 H 1.08000 * 120.03469 * 359.95634 * 24 10 9 48 48 H 1.08997 * 109.46845 * 60.00246 * 25 7 6 49 49 H 1.08997 * 109.46899 * 179.97438 * 25 7 6 50 50 H 1.08997 * 109.47537 * 299.99763 * 26 25 7 51 51 H 1.09004 * 109.47211 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8795 -0.1263 6 6 5.6100 2.8796 -0.1263 7 6 6.1200 2.2700 1.1811 8 7 7.5890 2.2706 1.1813 9 6 8.1151 2.2706 2.5528 10 6 9.6217 2.2706 2.5129 11 6 10.3124 1.0723 2.5004 12 6 11.6946 1.0681 2.4589 13 6 12.3901 2.2613 2.4405 14 6 11.6996 3.4659 2.4583 15 8 12.3803 4.6403 2.4408 16 6 13.7243 4.5701 2.5217 17 1 14.2163 3.6086 2.5137 18 6 14.4749 5.7321 2.6150 19 7 13.8757 6.9032 2.6251 20 14 16.3371 5.6349 2.7264 21 1 16.7611 4.2120 2.6959 22 1 16.9401 6.3563 1.5771 23 1 16.7902 6.2589 3.9954 24 6 10.3111 3.4668 2.4946 25 6 5.6100 0.8329 1.3068 26 6 4.0801 0.8329 1.3067 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.8532 -0.8427 35 1 3.7170 3.4689 0.7158 36 1 3.7163 3.3140 -1.0575 37 1 5.9733 3.9034 -0.2154 38 1 5.9733 2.2901 -0.9681 39 1 5.7566 2.8594 2.0228 40 1 7.9503 3.0521 0.6554 41 1 7.7660 1.3804 3.0759 42 1 7.7652 3.1603 3.0762 43 1 9.7711 0.1379 2.5189 44 1 12.2310 0.1308 2.4450 45 1 13.4697 2.2573 2.4118 46 1 14.4007 7.7162 2.6908 47 1 9.7713 4.4021 2.5082 48 1 5.9734 0.2435 0.4650 49 1 5.9737 0.3985 2.2379 50 1 3.7167 1.4223 2.1485 51 1 3.7167 -0.1909 1.3958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049543689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:12 Heat of formation + Delta-G solvation = -44.031474 kcal Electronic energy + Delta-G solvation = -25717.837472 eV Core-core repulsion = 22194.841499 eV Total energy + Delta-G solvation = -3522.995974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.49932 -38.94983 -36.95931 -35.86380 -33.87788 -32.26335 -31.15607 -30.94453 -29.40956 -28.71992 -26.04475 -25.26760 -24.07685 -23.16148 -21.71321 -21.51874 -20.62034 -20.56465 -19.87370 -17.63018 -16.98628 -15.83745 -15.70135 -15.18575 -15.01436 -14.76246 -14.55566 -14.39247 -14.32621 -14.09139 -13.71620 -13.57669 -13.43117 -13.18018 -12.66718 -12.50854 -12.41884 -12.37244 -12.29108 -11.82261 -11.69286 -11.61084 -11.34077 -11.25028 -11.21636 -11.17283 -10.87632 -10.79890 -10.67502 -10.62542 -10.58255 -10.40552 -10.19441 -10.05923 -9.31299 -8.82440 -8.35391 -8.02113 -7.19695 -6.42802 -4.01957 2.13819 2.42358 3.13380 3.14958 3.20439 3.98154 4.14765 4.39188 4.48391 4.60337 4.69427 4.75153 4.83845 4.99025 5.08374 5.09441 5.13174 5.23186 5.27405 5.34051 5.36203 5.37960 5.39250 5.43511 5.54773 5.58606 5.62487 5.66226 5.69727 5.78903 5.82043 5.86483 5.87833 5.96145 6.00525 6.02069 6.04429 6.10063 6.13972 6.20365 6.24041 6.35225 6.37040 6.69407 6.94176 7.10187 7.16635 7.31751 7.42147 7.46159 7.54215 7.85936 8.02459 9.03290 9.74037 10.75550 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032764 B = 0.001936 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.379942 B =14456.141130 C =15067.759063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.121 4.121 7 C 0.088 3.912 8 N -0.681 5.681 9 C 0.107 3.893 10 C -0.046 4.046 11 C -0.188 4.188 12 C -0.078 4.078 13 C -0.231 4.231 14 C 0.152 3.848 15 O -0.181 6.181 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.185 4.185 25 C -0.106 4.106 26 C -0.114 4.114 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.345 0.655 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.269 0.731 47 H 0.112 0.888 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.551 -11.583 -4.097 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.106 4.106 5 C -0.148 4.148 6 C -0.159 4.159 7 C -0.022 4.022 8 N -0.312 5.312 9 C -0.021 4.021 10 C -0.047 4.047 11 C -0.208 4.208 12 C -0.096 4.096 13 C -0.251 4.251 14 C 0.099 3.901 15 O -0.085 6.085 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.205 4.205 25 C -0.144 4.144 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.164 0.836 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.143 0.857 46 H 0.078 0.922 47 H 0.130 0.870 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.505 -11.771 -4.165 24.867 hybrid contribution 0.901 0.863 0.338 1.293 sum -20.604 -10.908 -3.827 23.625 Atomic orbital electron populations 1.21786 0.96158 1.01439 1.01667 1.21589 0.95538 0.97161 1.02135 1.21665 0.95110 0.96641 1.01850 1.21198 0.94574 0.96459 0.98387 1.21541 0.95152 0.96433 1.01721 1.21709 0.95492 1.00749 0.97987 1.21528 0.87705 0.96223 0.96751 1.60520 1.06145 1.50559 1.14021 1.20827 0.91413 1.00380 0.89520 1.19181 0.93495 0.92709 0.99315 1.20414 0.93721 0.96454 1.10202 1.20747 0.94023 0.96773 0.98052 1.21186 1.00575 0.92144 1.11163 1.19308 0.91551 0.86583 0.92644 1.83976 1.20683 1.24770 1.79049 1.21364 0.78340 0.94693 1.52314 0.89079 1.25274 1.00437 0.94207 0.96634 1.70047 1.36091 0.97425 1.46428 0.85654 0.80798 0.78789 0.78226 1.19119 1.20178 1.20188 1.20028 0.91571 0.97329 1.11559 1.21518 0.94150 0.96435 1.02336 1.21638 0.95673 1.00703 0.97189 0.92908 0.92936 0.92853 0.92136 0.91753 0.92106 0.92169 0.91133 0.92121 0.91960 0.92012 0.91039 0.94166 0.83621 0.90742 0.94841 0.87659 0.87529 0.85674 0.92153 0.86989 0.91342 0.92190 0.92294 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.80 5.69 -26.73 -0.15 -0.95 16 3 C -0.12 -0.77 4.68 -26.73 -0.13 -0.90 16 4 C -0.09 -0.67 2.19 -90.62 -0.20 -0.87 16 5 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 6 C -0.12 -1.17 5.19 -26.73 -0.14 -1.31 16 7 C 0.09 0.95 2.49 -67.71 -0.17 0.78 16 8 N -0.68 -9.05 6.30 -107.99 -0.68 -9.73 16 9 C 0.11 1.55 5.61 -4.98 -0.03 1.52 16 10 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 11 C -0.19 -3.37 9.70 -39.54 -0.38 -3.75 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 13 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 14 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.18 -5.22 9.76 0.04 0.00 -5.22 16 16 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 17 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 20 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.18 -3.94 9.65 -39.40 -0.38 -4.32 16 25 C -0.11 -1.06 5.43 -26.73 -0.15 -1.20 16 26 C -0.11 -0.93 4.96 -26.73 -0.13 -1.06 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 40 H 0.34 4.78 8.34 -39.29 -0.33 4.45 16 41 H 0.07 1.01 7.38 -51.93 -0.38 0.62 16 42 H 0.03 0.48 8.00 -51.93 -0.42 0.06 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -29.79 398.77 -11.01 -40.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -9.07 Total: 5.90 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -3.01 Total: -28.67 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.08 Total: -34.51 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.79 -11.01 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049543689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.226 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds