Wall clock time and date at job start Tue Mar 31 2020 12:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46962 * 2 1 4 4 C 1.53005 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47219 * 175.00087 * 4 3 2 6 6 C 1.52995 * 109.47215 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47006 * 299.99944 * 6 5 4 8 8 N 1.46902 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.46893 * 110.99726 * 154.99952 * 8 7 6 10 10 C 1.50707 * 109.46955 * 179.97438 * 9 8 7 11 11 C 1.38321 * 119.96235 * 269.72272 * 10 9 8 12 12 C 1.38280 * 120.13338 * 179.76522 * 11 10 9 13 13 C 1.38119 * 120.07318 * 0.51334 * 12 11 10 14 14 C 1.38853 * 119.92621 * 359.74165 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46905 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47463 * 120.00067 * 20 18 16 23 23 H 1.48498 * 109.46617 * 239.99942 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00049 * 10 9 8 25 25 C 1.53002 * 109.47087 * 59.99978 * 7 6 5 26 26 C 1.52996 * 109.46875 * 300.00060 * 25 7 6 27 27 H 1.09004 * 109.46906 * 59.99999 * 1 2 3 28 28 H 1.08997 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47174 * 300.00501 * 1 2 3 30 30 H 1.09004 * 109.47164 * 240.00056 * 2 1 3 31 31 H 1.08995 * 109.47045 * 119.99719 * 2 1 3 32 32 H 1.09004 * 109.47135 * 60.00038 * 3 2 1 33 33 H 1.09004 * 109.47311 * 299.99753 * 3 2 1 34 34 H 1.08993 * 109.47017 * 55.00116 * 4 3 2 35 35 H 1.09006 * 109.46895 * 59.99832 * 5 4 3 36 36 H 1.08997 * 109.46899 * 299.99903 * 5 4 3 37 37 H 1.09001 * 109.47058 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.47005 * 59.99481 * 6 5 4 39 39 H 1.08998 * 109.46626 * 300.00085 * 7 6 5 40 40 H 1.00895 * 110.99757 * 31.04267 * 8 7 6 41 41 H 1.08997 * 109.47275 * 60.00506 * 9 8 7 42 42 H 1.09001 * 109.47474 * 299.99960 * 9 8 7 43 43 H 1.07998 * 119.93523 * 0.02562 * 11 10 9 44 44 H 1.08002 * 119.96322 * 180.25843 * 12 11 10 45 45 H 1.08000 * 120.03646 * 179.76835 * 13 12 11 46 46 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 47 47 H 1.08000 * 120.03469 * 359.95634 * 24 10 9 48 48 H 1.08997 * 109.46845 * 60.00246 * 25 7 6 49 49 H 1.08997 * 109.46899 * 179.97438 * 25 7 6 50 50 H 1.08997 * 109.47537 * 299.99763 * 26 25 7 51 51 H 1.09004 * 109.47211 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8795 -0.1263 6 6 5.6100 2.8796 -0.1263 7 6 6.1200 2.2700 1.1811 8 7 7.5890 2.2706 1.1813 9 6 8.1151 2.2706 2.5528 10 6 9.6217 2.2706 2.5129 11 6 10.3124 1.0723 2.5004 12 6 11.6946 1.0681 2.4589 13 6 12.3901 2.2613 2.4405 14 6 11.6996 3.4659 2.4583 15 8 12.3803 4.6403 2.4408 16 6 13.7243 4.5701 2.5217 17 1 14.2163 3.6086 2.5137 18 6 14.4749 5.7321 2.6150 19 7 13.8757 6.9032 2.6251 20 14 16.3371 5.6349 2.7264 21 1 16.7611 4.2120 2.6959 22 1 16.9401 6.3563 1.5771 23 1 16.7902 6.2589 3.9954 24 6 10.3111 3.4668 2.4946 25 6 5.6100 0.8329 1.3068 26 6 4.0801 0.8329 1.3067 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.8532 -0.8427 35 1 3.7170 3.4689 0.7158 36 1 3.7163 3.3140 -1.0575 37 1 5.9733 3.9034 -0.2154 38 1 5.9733 2.2901 -0.9681 39 1 5.7566 2.8594 2.0228 40 1 7.9503 3.0521 0.6554 41 1 7.7660 1.3804 3.0759 42 1 7.7652 3.1603 3.0762 43 1 9.7711 0.1379 2.5189 44 1 12.2310 0.1308 2.4450 45 1 13.4697 2.2573 2.4118 46 1 14.4007 7.7162 2.6908 47 1 9.7713 4.4021 2.5082 48 1 5.9734 0.2435 0.4650 49 1 5.9737 0.3985 2.2379 50 1 3.7167 1.4223 2.1485 51 1 3.7167 -0.1909 1.3958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049543689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:11 Heat of formation + Delta-G solvation = -59.329419 kcal Electronic energy + Delta-G solvation = -25718.500841 eV Core-core repulsion = 22194.841499 eV Total energy + Delta-G solvation = -3523.659342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83866 -40.13486 -38.51974 -36.86963 -34.76705 -34.25957 -32.33069 -31.67174 -30.86911 -29.96293 -27.47029 -26.73654 -25.16690 -23.87923 -23.18997 -22.50362 -22.04538 -21.28035 -20.63583 -19.48058 -18.79074 -16.90713 -16.73999 -16.45021 -16.22869 -16.08429 -15.81694 -15.65706 -15.40147 -15.26456 -15.01230 -14.79444 -14.34550 -14.18412 -14.08485 -13.72681 -13.53055 -13.34710 -13.16786 -13.06968 -12.91628 -12.79145 -12.46121 -12.42928 -12.23035 -12.14379 -12.02570 -11.95631 -11.91912 -11.85232 -11.40374 -11.33620 -11.18975 -10.94242 -10.81050 -10.75339 -9.72147 -9.32732 -8.98006 -8.47237 -6.15648 0.52194 0.75921 1.34768 1.43203 1.53198 2.17456 2.78632 3.09235 3.32402 3.51498 3.74035 3.81396 3.94637 3.98731 4.11210 4.14951 4.23021 4.33010 4.35489 4.43816 4.44899 4.50389 4.57458 4.61676 4.66561 4.66801 4.68089 4.73521 4.76159 4.85133 4.98179 5.01017 5.05954 5.07879 5.13610 5.14261 5.17051 5.22464 5.30458 5.31605 5.35320 5.38091 5.43143 5.47667 5.57728 5.65940 5.66598 5.73686 5.80620 6.02702 6.12304 6.25219 6.40752 6.97774 7.78975 8.76333 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032764 B = 0.001936 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.379942 B =14456.141130 C =15067.759063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.084 4.084 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.088 3.912 8 N -0.685 5.685 9 C 0.113 3.887 10 C -0.037 4.037 11 C -0.170 4.170 12 C -0.073 4.073 13 C -0.244 4.244 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.196 4.196 25 C -0.102 4.102 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.339 0.661 41 H 0.095 0.905 42 H 0.033 0.967 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.118 0.882 46 H 0.272 0.728 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 -14.411 -4.112 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.021 4.021 8 N -0.316 5.316 9 C -0.016 4.016 10 C -0.037 4.037 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.263 4.263 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.216 4.216 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.704 -14.653 -4.183 27.344 hybrid contribution 1.000 1.522 0.324 1.850 sum -21.704 -13.131 -3.859 25.659 Atomic orbital electron populations 1.21784 0.95761 1.01742 1.01769 1.21581 0.95902 0.96796 1.02082 1.21620 0.94271 0.96988 1.01972 1.21157 0.95225 0.95844 0.98007 1.21522 0.93846 0.96991 1.02147 1.21680 0.96646 1.00200 0.97141 1.21604 0.86075 0.97135 0.97274 1.60567 1.07752 1.50281 1.12980 1.20806 0.88784 1.01428 0.90544 1.19575 0.95548 0.91603 0.97013 1.20934 0.93552 0.97676 1.06769 1.21158 0.94731 0.96875 0.96312 1.21299 1.00484 0.92712 1.11849 1.19870 0.92796 0.86583 0.94516 1.83938 1.21135 1.27150 1.81890 1.21859 0.78809 0.95543 1.52695 0.88167 1.26588 1.06124 0.93465 0.95911 1.70191 1.38429 0.98397 1.48997 0.84520 0.73489 0.79592 0.78541 1.17479 1.19322 1.19345 1.20224 0.90653 0.98661 1.12017 1.21481 0.95361 0.95302 1.01862 1.21602 0.94304 1.01358 0.97434 0.92792 0.92569 0.92788 0.92224 0.91757 0.92090 0.91955 0.91446 0.92071 0.91258 0.92559 0.91510 0.94337 0.84298 0.88702 0.94836 0.83897 0.83753 0.86465 0.91894 0.87687 0.92020 0.92394 0.92203 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.35 5.69 30.60 0.17 -1.17 16 3 C -0.11 -1.26 4.68 30.60 0.14 -1.12 16 4 C -0.08 -1.11 2.19 -10.79 -0.02 -1.13 16 5 C -0.11 -1.56 5.20 30.59 0.16 -1.40 16 6 C -0.12 -2.15 5.19 30.59 0.16 -1.99 16 7 C 0.09 1.77 2.49 44.92 0.11 1.88 16 8 N -0.68 -17.08 6.30 -495.57 -3.12 -20.20 16 9 C 0.11 3.03 5.61 85.56 0.48 3.51 16 10 C -0.04 -1.27 5.39 -19.88 -0.11 -1.38 16 11 C -0.17 -5.49 9.70 22.30 0.22 -5.28 16 12 C -0.07 -2.56 10.04 22.25 0.22 -2.34 16 13 C -0.24 -10.88 9.17 22.39 0.21 -10.68 16 14 C 0.11 5.72 6.65 22.58 0.15 5.87 16 15 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 16 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 18 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 19 N -0.92 -57.21 13.67 21.61 0.30 -56.92 16 20 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 C -0.20 -8.52 9.65 22.39 0.22 -8.31 16 25 C -0.10 -1.79 5.43 30.59 0.17 -1.63 16 26 C -0.11 -1.52 4.96 30.59 0.15 -1.37 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.04 0.80 7.80 -2.39 -0.02 0.79 16 40 H 0.34 9.17 8.34 -89.70 -0.75 8.43 16 41 H 0.09 2.21 7.38 -2.39 -0.02 2.19 16 42 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 45 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 46 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 51 H 0.07 0.91 6.56 -2.38 -0.02 0.89 16 Total: -1.00 -68.39 398.77 3.37 -65.02 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.14 Total: 33.28 kcal Atomic # 6 Polarization: -56.26 SS G_CDS: 4.25 Total: -52.01 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.83 Total: -77.12 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.39 3.37 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049543689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.688 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds