Wall clock time and date at job start Tue Mar 31 2020 11:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47390 * 2 1 4 4 C 1.38287 * 119.95044 * 270.28121 * 3 2 1 5 5 C 1.38113 * 120.05798 * 180.23297 * 4 3 2 6 6 C 1.50698 * 120.02975 * 179.74449 * 5 4 3 7 7 N 1.46504 * 109.47016 * 259.72471 * 6 5 4 8 8 C 1.36936 * 120.00404 * 89.99746 * 7 6 5 9 9 H 1.07991 * 120.00274 * 215.84752 * 8 7 6 10 10 C 1.38811 * 119.99512 * 35.84548 * 8 7 6 11 11 N 1.31615 * 120.00276 * 21.32848 * 10 8 7 12 12 Si 1.86806 * 119.99757 * 201.32422 * 10 8 7 13 13 H 1.48494 * 109.47067 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47453 * 300.00374 * 12 10 8 15 15 H 1.48505 * 109.46989 * 60.00456 * 12 10 8 16 16 C 1.46505 * 119.99905 * 269.99563 * 7 6 5 17 17 C 1.52994 * 117.49722 * 191.63318 * 16 7 6 18 18 C 1.53003 * 117.49664 * 122.97372 * 16 7 6 19 19 C 1.38751 * 119.94656 * 359.46454 * 5 4 3 20 20 O 1.35898 * 120.06184 * 180.25481 * 19 5 4 21 21 C 1.38719 * 119.88633 * 0.27791 * 19 5 4 22 22 C 1.50703 * 120.02812 * 180.02562 * 21 19 5 23 23 C 1.52996 * 109.46987 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.46970 * 299.99909 * 22 21 19 25 25 C 1.52993 * 109.46968 * 59.99976 * 22 21 19 26 26 C 1.38165 * 119.94328 * 0.02562 * 21 19 5 27 27 H 1.09002 * 109.47066 * 299.99595 * 1 2 3 28 28 H 1.08998 * 109.47224 * 59.99500 * 1 2 3 29 29 H 1.09005 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47066 * 240.00405 * 2 1 3 31 31 H 1.08998 * 109.47224 * 120.00500 * 2 1 3 32 32 H 1.08006 * 119.96971 * 359.97338 * 4 3 2 33 33 H 1.09003 * 109.47849 * 139.72680 * 6 5 4 34 34 H 1.08995 * 109.47307 * 19.71780 * 6 5 4 35 35 H 0.97006 * 119.99892 * 176.61671 * 11 10 8 36 36 H 1.08997 * 115.54918 * 337.31080 * 16 7 6 37 37 H 1.08995 * 117.50178 * 0.02562 * 17 16 7 38 38 H 1.09007 * 117.49403 * 145.02296 * 17 16 7 39 39 H 1.08999 * 117.50007 * 214.98135 * 18 16 7 40 40 H 1.08997 * 117.49884 * 359.97438 * 18 16 7 41 41 H 0.96702 * 114.00011 * 90.00264 * 20 19 5 42 42 H 1.08998 * 109.47110 * 60.00042 * 23 22 21 43 43 H 1.09004 * 109.47338 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.47294 * 300.00502 * 23 22 21 45 45 H 1.08999 * 109.47158 * 60.00405 * 24 22 21 46 46 H 1.09000 * 109.47053 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47382 * 300.00114 * 24 22 21 48 48 H 1.09000 * 109.47172 * 60.00348 * 25 22 21 49 49 H 1.09000 * 109.46988 * 180.02562 * 25 22 21 50 50 H 1.08999 * 109.47457 * 299.99777 * 25 22 21 51 51 H 1.07993 * 119.97092 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2570 2.0736 -1.1982 5 6 2.7220 3.3741 -1.2008 6 6 2.9720 4.0830 -2.5069 7 7 4.4050 4.0561 -2.8106 8 6 4.9321 3.0205 -3.5351 9 1 5.9207 2.6503 -3.3073 10 6 4.1956 2.4466 -4.5622 11 7 3.2125 3.1189 -5.1224 12 14 4.5999 0.7200 -5.1495 13 1 3.6740 0.3409 -6.2469 14 1 5.9989 0.6807 -5.6459 15 1 4.4477 -0.2347 -4.0222 16 6 5.2741 5.1373 -2.3393 17 6 6.6927 5.2023 -2.9086 18 6 6.4678 4.7528 -1.4627 19 6 2.9532 4.0295 0.0001 20 8 3.4058 5.3108 0.0003 21 6 2.7221 3.3742 1.2008 22 6 2.9716 4.0831 2.5070 23 6 2.6410 3.1436 3.6684 24 6 4.4421 4.4974 2.5896 25 6 2.0857 5.3278 2.5891 26 6 2.2629 2.0711 1.1980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0726 1.5647 -2.1328 33 1 2.6365 5.1172 -2.4292 34 1 2.4224 3.5816 -3.3035 35 1 2.7299 2.7376 -5.8725 36 1 4.7746 6.0816 -2.1232 37 1 6.9792 4.4411 -3.6341 38 1 7.1266 6.1897 -3.0668 39 1 6.7538 5.4445 -0.6704 40 1 6.6062 3.6956 -1.2364 41 1 2.7039 5.9759 0.0002 42 1 3.2725 2.2571 3.6097 43 1 2.8219 3.6562 4.6133 44 1 1.5935 2.8480 3.6097 45 1 4.6781 5.1666 1.7623 46 1 4.6225 5.0105 3.5342 47 1 5.0733 3.6107 2.5311 48 1 1.0381 5.0326 2.5303 49 1 2.2665 5.8408 3.5337 50 1 2.3217 5.9970 1.7617 51 1 2.0824 1.5607 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:58 Heat of formation + Delta-G solvation = 9.248279 kcal Electronic energy + Delta-G solvation = -28772.442363 eV Core-core repulsion = 25251.756773 eV Total energy + Delta-G solvation = -3520.685590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.03840 -37.05914 -36.66866 -36.03758 -33.75367 -32.69068 -30.97175 -29.37072 -28.09514 -27.35379 -27.04482 -25.43804 -23.50608 -23.22967 -22.18710 -21.22392 -19.97658 -19.57473 -18.60491 -17.59065 -16.31835 -15.75941 -15.49684 -15.12605 -14.67031 -14.28430 -14.10826 -13.97413 -13.80875 -13.73404 -13.20083 -13.07398 -12.91935 -12.63241 -12.12142 -12.08008 -11.94155 -11.77326 -11.45775 -11.43304 -11.32602 -11.13795 -11.10024 -11.00659 -10.81712 -10.79440 -10.59982 -10.50158 -10.43309 -10.32778 -10.23919 -9.96054 -9.53627 -9.37490 -9.15910 -8.41453 -7.97594 -7.69797 -6.47178 -5.82290 -3.34975 1.87321 2.01938 3.34203 3.39722 3.43458 4.17417 4.45542 4.73614 4.84969 5.01726 5.08786 5.15754 5.21362 5.26173 5.37157 5.45976 5.53487 5.58994 5.62232 5.64499 5.76937 5.81817 5.86812 5.95980 5.99540 6.01227 6.05815 6.07400 6.08443 6.15003 6.20431 6.27182 6.32834 6.36656 6.39481 6.47605 6.53945 6.60166 6.62669 6.70231 6.76195 6.78234 7.05988 7.14068 7.18303 7.27188 7.33779 7.48615 7.69176 7.81941 8.27962 8.50493 9.16319 9.80288 10.36823 11.17641 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.006102 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.408232 B = 4587.584656 C = 6294.462948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.090 4.090 6 C 0.183 3.817 7 N -0.538 5.538 8 C -0.250 4.250 9 H 0.060 0.940 10 C 0.014 3.986 11 N -0.888 5.888 12 Si 0.893 3.107 13 H -0.289 1.289 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.148 3.852 17 C -0.205 4.205 18 C -0.216 4.216 19 C 0.111 3.889 20 O -0.480 6.480 21 C -0.103 4.103 22 C -0.016 4.016 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.126 4.126 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.369 0.631 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.061 0.939 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 1.141 14.045 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.110 4.110 5 C -0.094 4.094 6 C 0.057 3.943 7 N -0.252 5.252 8 C -0.380 4.380 9 H 0.078 0.922 10 C -0.186 4.186 11 N -0.531 5.531 12 Si 0.723 3.277 13 H -0.215 1.215 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.038 3.962 17 C -0.243 4.243 18 C -0.257 4.257 19 C 0.066 3.934 20 O -0.290 6.290 21 C -0.103 4.103 22 C -0.016 4.016 23 C -0.199 4.199 24 C -0.195 4.195 25 C -0.196 4.196 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.655 0.820 13.861 14.644 hybrid contribution -0.010 -0.862 -0.289 0.909 sum -4.665 -0.041 13.572 14.351 Atomic orbital electron populations 1.21731 0.95266 1.01032 1.02055 1.20466 0.95725 0.93431 1.02256 1.19789 1.00813 0.95773 0.93325 1.20840 0.98973 0.94189 0.96987 1.21507 0.94834 0.95543 0.97466 1.19925 0.86477 0.96500 0.91372 1.43228 1.02752 1.21258 1.58011 1.18903 1.01732 1.07878 1.09481 0.92250 1.25085 0.98913 0.98801 0.95784 1.69889 1.24510 1.36309 1.22369 0.86502 0.77944 0.85222 0.78059 1.21492 1.20679 1.20760 1.20935 0.85222 0.91762 0.98232 1.23134 1.03288 1.01045 0.96854 1.23210 1.09611 1.00390 0.92482 1.18043 0.98924 0.85471 0.90962 1.84940 1.34724 1.13169 1.96129 1.19949 1.01616 0.95042 0.93728 1.19273 0.96136 0.94523 0.91715 1.21950 1.01250 0.99350 0.97300 1.21906 0.94213 1.01630 1.01799 1.21882 0.98945 0.97136 1.01657 1.20642 1.02540 0.94225 0.97046 0.92900 0.92468 0.92991 0.91288 0.91776 0.86413 0.94880 0.87604 0.93316 0.89460 0.88628 0.91039 0.91184 0.90351 0.77607 0.92546 0.92965 0.92661 0.90291 0.93636 0.93285 0.93065 0.92892 0.92045 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.08 -1.15 6.06 -27.89 -0.17 -1.32 16 3 C -0.10 -1.63 5.14 -104.60 -0.54 -2.17 16 4 C -0.09 -1.79 9.32 -39.61 -0.37 -2.16 16 5 C -0.09 -1.82 5.48 -104.48 -0.57 -2.39 16 6 C 0.18 4.17 5.13 -5.19 -0.03 4.14 16 7 N -0.54 -13.13 2.78 -167.02 -0.46 -13.60 16 8 C -0.25 -6.71 8.18 -15.06 -0.12 -6.83 16 9 H 0.06 1.65 7.18 -52.49 -0.38 1.27 16 10 C 0.01 0.38 4.97 -17.43 -0.09 0.29 16 11 N -0.89 -24.61 11.34 55.49 0.63 -23.98 16 12 Si 0.89 21.36 29.61 -169.99 -5.03 16.33 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.15 3.24 5.55 -67.93 -0.38 2.86 16 17 C -0.20 -4.28 9.79 -26.70 -0.26 -4.54 16 18 C -0.22 -4.44 10.16 -26.69 -0.27 -4.71 16 19 C 0.11 1.95 6.27 -39.21 -0.25 1.70 16 20 O -0.48 -7.58 8.03 -19.42 -0.16 -7.73 16 21 C -0.10 -1.62 4.77 -104.47 -0.50 -2.12 16 22 C -0.02 -0.21 0.75 -155.66 -0.12 -0.33 16 23 C -0.14 -1.59 7.13 37.16 0.27 -1.32 16 24 C -0.14 -1.87 8.26 37.16 0.31 -1.56 16 25 C -0.14 -1.55 8.26 37.15 0.31 -1.24 16 26 C -0.13 -1.98 8.63 -39.60 -0.34 -2.32 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.12 2.48 8.03 -52.48 -0.42 2.06 16 33 H 0.03 0.71 7.76 -51.93 -0.40 0.31 16 34 H 0.11 2.71 5.24 -51.93 -0.27 2.44 16 35 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.09 1.81 7.91 -51.93 -0.41 1.40 16 37 H 0.10 2.20 6.81 -51.93 -0.35 1.84 16 38 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 41 H 0.37 4.47 7.57 45.56 0.35 4.81 16 42 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.59 7.51 -51.93 -0.39 0.20 16 45 H 0.08 1.19 6.14 -51.93 -0.32 0.87 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.67 5.32 -51.93 -0.28 0.39 16 51 H 0.12 1.57 5.89 -52.49 -0.31 1.26 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -28.40 393.75 -10.04 -38.45 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.20 Total: 10.00 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.75 Total: -25.40 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.17 Total: -37.57 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.16 Total: -7.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.40 -10.04 -38.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.695 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds