Wall clock time and date at job start Tue Mar 31 2020 11:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47390 * 2 1 4 4 C 1.38287 * 119.95044 * 270.28121 * 3 2 1 5 5 C 1.38113 * 120.05798 * 180.23297 * 4 3 2 6 6 C 1.50698 * 120.02975 * 179.74449 * 5 4 3 7 7 N 1.46504 * 109.47016 * 259.72471 * 6 5 4 8 8 C 1.36936 * 120.00404 * 89.99746 * 7 6 5 9 9 H 1.07991 * 120.00274 * 215.84752 * 8 7 6 10 10 C 1.38811 * 119.99512 * 35.84548 * 8 7 6 11 11 N 1.31615 * 120.00276 * 21.32848 * 10 8 7 12 12 Si 1.86806 * 119.99757 * 201.32422 * 10 8 7 13 13 H 1.48494 * 109.47067 * 179.97438 * 12 10 8 14 14 H 1.48491 * 109.47453 * 300.00374 * 12 10 8 15 15 H 1.48505 * 109.46989 * 60.00456 * 12 10 8 16 16 C 1.46505 * 119.99905 * 269.99563 * 7 6 5 17 17 C 1.52994 * 117.49722 * 191.63318 * 16 7 6 18 18 C 1.53003 * 117.49664 * 122.97372 * 16 7 6 19 19 C 1.38751 * 119.94656 * 359.46454 * 5 4 3 20 20 O 1.35898 * 120.06184 * 180.25481 * 19 5 4 21 21 C 1.38719 * 119.88633 * 0.27791 * 19 5 4 22 22 C 1.50703 * 120.02812 * 180.02562 * 21 19 5 23 23 C 1.52996 * 109.46987 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.46970 * 299.99909 * 22 21 19 25 25 C 1.52993 * 109.46968 * 59.99976 * 22 21 19 26 26 C 1.38165 * 119.94328 * 0.02562 * 21 19 5 27 27 H 1.09002 * 109.47066 * 299.99595 * 1 2 3 28 28 H 1.08998 * 109.47224 * 59.99500 * 1 2 3 29 29 H 1.09005 * 109.47546 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47066 * 240.00405 * 2 1 3 31 31 H 1.08998 * 109.47224 * 120.00500 * 2 1 3 32 32 H 1.08006 * 119.96971 * 359.97338 * 4 3 2 33 33 H 1.09003 * 109.47849 * 139.72680 * 6 5 4 34 34 H 1.08995 * 109.47307 * 19.71780 * 6 5 4 35 35 H 0.97006 * 119.99892 * 176.61671 * 11 10 8 36 36 H 1.08997 * 115.54918 * 337.31080 * 16 7 6 37 37 H 1.08995 * 117.50178 * 0.02562 * 17 16 7 38 38 H 1.09007 * 117.49403 * 145.02296 * 17 16 7 39 39 H 1.08999 * 117.50007 * 214.98135 * 18 16 7 40 40 H 1.08997 * 117.49884 * 359.97438 * 18 16 7 41 41 H 0.96702 * 114.00011 * 90.00264 * 20 19 5 42 42 H 1.08998 * 109.47110 * 60.00042 * 23 22 21 43 43 H 1.09004 * 109.47338 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.47294 * 300.00502 * 23 22 21 45 45 H 1.08999 * 109.47158 * 60.00405 * 24 22 21 46 46 H 1.09000 * 109.47053 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47382 * 300.00114 * 24 22 21 48 48 H 1.09000 * 109.47172 * 60.00348 * 25 22 21 49 49 H 1.09000 * 109.46988 * 180.02562 * 25 22 21 50 50 H 1.08999 * 109.47457 * 299.99777 * 25 22 21 51 51 H 1.07993 * 119.97092 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2570 2.0736 -1.1982 5 6 2.7220 3.3741 -1.2008 6 6 2.9720 4.0830 -2.5069 7 7 4.4050 4.0561 -2.8106 8 6 4.9321 3.0205 -3.5351 9 1 5.9207 2.6503 -3.3073 10 6 4.1956 2.4466 -4.5622 11 7 3.2125 3.1189 -5.1224 12 14 4.5999 0.7200 -5.1495 13 1 3.6740 0.3409 -6.2469 14 1 5.9989 0.6807 -5.6459 15 1 4.4477 -0.2347 -4.0222 16 6 5.2741 5.1373 -2.3393 17 6 6.6927 5.2023 -2.9086 18 6 6.4678 4.7528 -1.4627 19 6 2.9532 4.0295 0.0001 20 8 3.4058 5.3108 0.0003 21 6 2.7221 3.3742 1.2008 22 6 2.9716 4.0831 2.5070 23 6 2.6410 3.1436 3.6684 24 6 4.4421 4.4974 2.5896 25 6 2.0857 5.3278 2.5891 26 6 2.2629 2.0711 1.1980 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0726 1.5647 -2.1328 33 1 2.6365 5.1172 -2.4292 34 1 2.4224 3.5816 -3.3035 35 1 2.7299 2.7376 -5.8725 36 1 4.7746 6.0816 -2.1232 37 1 6.9792 4.4411 -3.6341 38 1 7.1266 6.1897 -3.0668 39 1 6.7538 5.4445 -0.6704 40 1 6.6062 3.6956 -1.2364 41 1 2.7039 5.9759 0.0002 42 1 3.2725 2.2571 3.6097 43 1 2.8219 3.6562 4.6133 44 1 1.5935 2.8480 3.6097 45 1 4.6781 5.1666 1.7623 46 1 4.6225 5.0105 3.5342 47 1 5.0733 3.6107 2.5311 48 1 1.0381 5.0326 2.5303 49 1 2.2665 5.8408 3.5337 50 1 2.3217 5.9970 1.7617 51 1 2.0824 1.5607 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:57 Heat of formation + Delta-G solvation = -3.509224 kcal Electronic energy + Delta-G solvation = -28772.995570 eV Core-core repulsion = 25251.756773 eV Total energy + Delta-G solvation = -3521.238797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33213 -38.73970 -37.92956 -37.26324 -35.45041 -34.12965 -32.64876 -30.93866 -29.33886 -28.40592 -28.01121 -27.17044 -25.23806 -24.44564 -23.44480 -22.92200 -21.66974 -21.10691 -19.76440 -18.88518 -18.20284 -17.35204 -16.92572 -16.54785 -16.21699 -15.85445 -15.63945 -15.09607 -15.05125 -14.83513 -14.70329 -14.43531 -14.18169 -14.07676 -13.60818 -13.25867 -13.08549 -13.06098 -12.97400 -12.73064 -12.67397 -12.51368 -12.40130 -12.37256 -12.27407 -12.23569 -12.18657 -11.95092 -11.93156 -11.72684 -11.66822 -11.41282 -11.27308 -10.88408 -10.70769 -10.39449 -9.39119 -9.03371 -8.44062 -7.84123 -5.41961 0.53178 0.62123 1.38590 1.41421 1.47649 2.44578 2.82726 3.15702 3.51376 3.51920 3.69507 3.74379 3.91313 4.05301 4.21041 4.22538 4.34074 4.37458 4.47735 4.50728 4.54998 4.58867 4.60959 4.68888 4.74190 4.86622 4.87778 4.89042 4.95802 4.99593 5.01927 5.06810 5.08684 5.09470 5.12248 5.18953 5.27705 5.33711 5.36306 5.39175 5.40979 5.48800 5.54879 5.55420 5.61394 5.70371 5.77920 5.86401 6.00396 6.18302 6.46608 7.07850 7.14982 7.86910 8.37250 9.10414 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.006102 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.408232 B = 4587.584656 C = 6294.462948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.098 4.098 4 C -0.116 4.116 5 C -0.115 4.115 6 C 0.191 3.809 7 N -0.552 5.552 8 C -0.253 4.253 9 H 0.043 0.957 10 C -0.025 4.025 11 N -0.912 5.912 12 Si 0.943 3.057 13 H -0.286 1.286 14 H -0.278 1.278 15 H -0.283 1.283 16 C 0.131 3.869 17 C -0.202 4.202 18 C -0.196 4.196 19 C 0.114 3.886 20 O -0.483 6.483 21 C -0.099 4.099 22 C -0.016 4.016 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.386 0.614 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.032 0.968 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 1.487 17.261 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.135 4.135 5 C -0.118 4.118 6 C 0.065 3.935 7 N -0.268 5.268 8 C -0.384 4.384 9 H 0.061 0.939 10 C -0.223 4.223 11 N -0.556 5.556 12 Si 0.772 3.228 13 H -0.212 1.212 14 H -0.204 1.204 15 H -0.210 1.210 16 C 0.023 3.977 17 C -0.240 4.240 18 C -0.237 4.237 19 C 0.068 3.932 20 O -0.295 6.295 21 C -0.100 4.100 22 C -0.016 4.016 23 C -0.197 4.197 24 C -0.192 4.192 25 C -0.194 4.194 26 C -0.140 4.140 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.243 0.757 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.858 1.181 17.093 17.809 hybrid contribution 0.064 -0.908 -1.207 1.512 sum -4.794 0.273 15.886 16.596 Atomic orbital electron populations 1.21687 0.93625 1.02357 1.01836 1.20529 0.97124 0.91698 1.02575 1.20047 1.00115 0.97023 0.92648 1.20739 1.01081 0.94568 0.97143 1.21286 0.97245 0.95966 0.97268 1.19672 0.85374 0.96491 0.91922 1.43357 1.03488 1.21543 1.58374 1.18898 1.01232 1.08700 1.09563 0.93921 1.25593 0.99173 1.01325 0.96193 1.70000 1.25407 1.37363 1.22828 0.85717 0.77719 0.81940 0.77471 1.21196 1.20364 1.20969 1.21129 0.85492 0.91792 0.99271 1.23132 1.02660 1.01772 0.96481 1.23073 1.08192 0.99442 0.92945 1.18000 0.98434 0.86125 0.90593 1.84884 1.35648 1.12879 1.96042 1.20325 0.99983 0.95131 0.94521 1.19355 0.96142 0.95475 0.90609 1.21942 1.01630 0.98922 0.97223 1.21859 0.94283 1.00716 1.02324 1.21867 0.98578 0.96292 1.02668 1.21006 1.01201 0.94222 0.97538 0.91724 0.94053 0.90909 0.92794 0.89574 0.89390 0.94491 0.90963 0.93693 0.87985 0.91311 0.88050 0.88455 0.92879 0.75664 0.92952 0.91094 0.91858 0.91959 0.91382 0.94903 0.92829 0.91051 0.92136 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.44 16 2 C -0.08 -2.24 6.06 29.85 0.18 -2.06 16 3 C -0.10 -3.28 5.14 -19.85 -0.10 -3.38 16 4 C -0.12 -4.79 9.32 22.25 0.21 -4.58 16 5 C -0.11 -4.78 5.48 -19.77 -0.11 -4.89 16 6 C 0.19 9.08 5.13 85.63 0.44 9.52 16 7 N -0.55 -27.83 2.78 -682.35 -1.89 -29.72 16 8 C -0.25 -14.15 8.18 84.03 0.69 -13.47 16 9 H 0.04 2.49 7.18 -2.92 -0.02 2.47 16 10 C -0.03 -1.41 4.97 84.86 0.42 -0.99 16 11 N -0.91 -52.79 11.34 21.65 0.25 -52.54 16 12 Si 0.94 45.53 29.61 68.60 2.03 47.56 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 C 0.13 5.76 5.55 44.99 0.25 6.01 16 17 C -0.20 -8.37 9.79 30.62 0.30 -8.07 16 18 C -0.20 -7.91 10.16 30.62 0.31 -7.59 16 19 C 0.11 3.93 6.27 22.51 0.14 4.07 16 20 O -0.48 -14.68 8.03 -92.40 -0.74 -15.42 16 21 C -0.10 -2.93 4.77 -19.77 -0.09 -3.03 16 22 C -0.02 -0.36 0.75 -52.93 -0.04 -0.40 16 23 C -0.14 -2.58 7.13 71.98 0.51 -2.07 16 24 C -0.13 -3.28 8.26 71.98 0.59 -2.68 16 25 C -0.14 -2.58 8.26 71.98 0.59 -1.98 16 26 C -0.12 -3.56 8.63 22.26 0.19 -3.37 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 31 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.09 4.04 8.03 -2.91 -0.02 4.02 16 33 H 0.04 1.65 7.76 -2.39 -0.02 1.63 16 34 H 0.07 3.95 5.24 -2.39 -0.01 3.94 16 35 H 0.25 14.23 8.32 -92.70 -0.77 13.46 16 36 H 0.10 4.13 7.91 -2.39 -0.02 4.11 16 37 H 0.07 3.23 6.81 -2.39 -0.02 3.21 16 38 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 39 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.39 8.77 7.57 -74.06 -0.56 8.21 16 42 H 0.05 1.01 7.52 -2.39 -0.02 0.99 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.08 7.51 -2.39 -0.02 1.06 16 45 H 0.06 1.73 6.14 -2.39 -0.01 1.72 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.06 1.14 5.32 -2.39 -0.01 1.13 16 51 H 0.14 3.38 5.89 -2.91 -0.02 3.37 16 Total: -1.00 -63.81 393.75 5.19 -58.62 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.35 Total: 32.89 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 5.20 Total: -41.39 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.65 Total: -82.26 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.74 Total: -15.42 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -63.81 5.19 -58.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.115 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds